RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 ZNF440Q8IYI8 595 aa9.05□□□□□ -0.96
USP39-214ENST00000474572 UBALD2Q8IYN6 164 aa9.05□□□□□ -0.96
USP39-214ENST00000474572 CACTIN-AS1Q8N1I8 211 aa9.05□□□□□ -0.96
USP39-214ENST00000474572 SLC25A45Q8N413 288 aa9.05□□□□□ -0.96
USP39-214ENST00000474572 BCORP1Q8N888 145 aa9.05□□□□□ -0.96
USP39-214ENST00000474572 FANK1Q8TC84 345 aa9.05□□□□□ -0.96
USP39-214ENST00000474572 TM9SF4Q92544 642 aa9.05□□□□□ -0.96
USP39-214ENST00000474572 BPIFA2Q96DR5 249 aa9.05□□□□□ -0.96
USP39-214ENST00000474572 CHCHD6Q9BRQ6 235 aa9.05□□□□□ -0.96
USP39-214ENST00000474572 RNF167Q9H6Y7 350 aa9.05□□□□□ -0.96
USP39-214ENST00000474572 ATP13A2Q9NQ11 1180 aa9.05□□□□□ -0.96
USP39-214ENST00000474572 STUB1Q9UNE7 303 aa9.05□□□□□ -0.96
USP39-214ENST00000474572 BAIAP2Q9UQB8 552 aa9.05□□□□□ -0.96
USP39-214ENST00000474572 CFL2Q9Y281 166 aa9.05□□□□□ -0.96
USP39-214ENST00000474572 GPR52Q9Y2T5 361 aa9.05□□□□□ -0.96
USP39-214ENST00000474572 SF3B6Q9Y3B4 125 aaKnown RBP9.05□□□□□ -0.96
USP39-214ENST00000474572 XIRP2A4UGR9 3374 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 A0A1B0GVT2 93 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 TCRBV16S1A1N1A0A5B0 115 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 HTR3EA5X5Y0 456 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 SYNDIG1LA6NDD5 238 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 SERINC4A6NH21 518 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 TMEM150CB9EJG8 249 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 ZNF670-ZNF695F2Z2N8 137 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 TAF4O00268 1085 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 HCN1O60741 890 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 CDC123O75794 336 aaPredicted RBP9.04□□□□□ -0.96
USP39-214ENST00000474572 OR2B3O76000 313 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 IGKV3-11P04433 115 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 PNLIPP16233 465 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 BMP7P18075 431 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 MYL12AP19105 171 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 PSMA1P25786 263 aaKnown RBP9.04□□□□□ -0.96
USP39-214ENST00000474572 LCN1P31025 176 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 SLC1A3P43003 542 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 PPICP45877 212 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 SLC37A1P57057 533 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 DMWDQ09019 674 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 FHL1Q13642 323 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 DSG2Q14126 1118 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 INAQ16352 499 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 KLHL26Q53HC5 615 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 CLEC12AQ5QGZ9 265 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 NIPAL3Q6P499 406 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 C16orf87Q6PH81 154 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 ZC3H14Q6PJT7 736 aaKnown RBP9.04□□□□□ -0.96
USP39-214ENST00000474572 CD200R1LQ6Q8B3 271 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 THSD4Q6ZMP0 1018 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 DCDC5Q6ZRR9 648 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 CXXC5Q7LFL8 322 aaKnown RBP9.04□□□□□ -0.96
USP39-214ENST00000474572 BMP8AQ7Z5Y6 402 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 BTLAQ7Z6A9 289 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 PSD4Q8NDX1 1056 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 OR52L1Q8NGH7 329 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 OR52N1Q8NH53 320 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 OR1L3Q8NH93 324 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 PTPMT1Q8WUK0 201 aaPredicted RBP9.04□□□□□ -0.96
USP39-214ENST00000474572 PPP1R14BQ96C90 147 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 TRMT61AQ96FX7 289 aaKnown RBP9.04□□□□□ -0.96
USP39-214ENST00000474572 AHCYL2Q96HN2 611 aaKnown RBP9.04□□□□□ -0.96
USP39-214ENST00000474572 LRFN5Q96NI6 719 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 SLC46A1Q96NT5 459 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 ARHGAP9Q9BRR9 750 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 CNPPD1Q9BV87 410 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 ZNF768Q9H5H4 540 aaKnown RBP9.04□□□□□ -0.96
USP39-214ENST00000474572 EXOSC3Q9NQT5 275 aaKnown RBP9.04□□□□□ -0.96
USP39-214ENST00000474572 CMC2Q9NRP2 79 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 COLQQ9Y215 455 aaPredicted RBP9.04□□□□□ -0.96
USP39-214ENST00000474572 SLC35A3Q9Y2D2 325 aa9.04□□□□□ -0.96
USP39-214ENST00000474572 LOC100506127A0A0U1RQW1 187 aa9.03□□□□□ -0.96
USP39-214ENST00000474572 OR2W5A6NFC9 320 aa9.03□□□□□ -0.96
USP39-214ENST00000474572 FRG2CA6NGY1 282 aa9.03□□□□□ -0.96
USP39-214ENST00000474572 C17orf105B2RV13 164 aa9.03□□□□□ -0.96
USP39-214ENST00000474572 POLR1CO15160 346 aaPredicted RBP9.03□□□□□ -0.96
USP39-214ENST00000474572 TOX3O15405 576 aaPredicted RBP9.03□□□□□ -0.96
USP39-214ENST00000474572 SLC2A10O95528 541 aa9.03□□□□□ -0.96
USP39-214ENST00000474572 IL33O95760 270 aa9.03□□□□□ -0.96
USP39-214ENST00000474572 DDAH2O95865 285 aa9.03□□□□□ -0.96
USP39-214ENST00000474572 CH25HO95992 272 aa9.03□□□□□ -0.96
USP39-214ENST00000474572 NGFRP08138 427 aa9.03□□□□□ -0.96
USP39-214ENST00000474572 TDGF1P13385 188 aa9.03□□□□□ -0.96
USP39-214ENST00000474572 FOSL2P15408 326 aa9.03□□□□□ -0.96
USP39-214ENST00000474572 FUT1P19526 365 aa9.03□□□□□ -0.96
USP39-214ENST00000474572 RORAP35398 523 aa9.03□□□□□ -0.96
USP39-214ENST00000474572 SOX3P41225 446 aa9.03□□□□□ -0.96
USP39-214ENST00000474572 GPR143P51810 404 aa9.03□□□□□ -0.96
USP39-214ENST00000474572 EFNA3P52797 238 aa9.03□□□□□ -0.96
USP39-214ENST00000474572 PPP5CP53041 499 aa9.03□□□□□ -0.96
USP39-214ENST00000474572 BDH1Q02338 343 aa9.03□□□□□ -0.96
USP39-214ENST00000474572 KCNAB1Q14722 419 aa9.03□□□□□ -0.96
USP39-214ENST00000474572 ELAVL1Q15717 326 aaKnown RBP9.03□□□□□ -0.96
USP39-214ENST00000474572 PLK5Q496M5 336 aa9.03□□□□□ -0.96
USP39-214ENST00000474572 ZNF362Q5T0B9 420 aaPredicted RBP9.03□□□□□ -0.96
USP39-214ENST00000474572 ULK3Q6PHR2 472 aa9.03□□□□□ -0.96
USP39-214ENST00000474572 SMARCD3Q6STE5 483 aa9.03□□□□□ -0.96
USP39-214ENST00000474572 KIRREL2Q6UWL6 708 aa9.03□□□□□ -0.96
USP39-214ENST00000474572 HSDL2Q6YN16 418 aa9.03□□□□□ -0.96
USP39-214ENST00000474572 SLITRK4Q8IW52 837 aa9.03□□□□□ -0.96
USP39-214ENST00000474572 CDK20Q8IZL9 346 aa9.03□□□□□ -0.96
USP39-214ENST00000474572 METTL27Q8N6F8 245 aaPredicted RBP9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms