RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 OR8K3Q8NH51 312 aa18.45■□□□□ 0.54
CLN3-250ENST00000636839 C8orf4Q9NR00 106 aa18.45■□□□□ 0.54
CLN3-250ENST00000636839 KIF17Q9P2E2 1029 aa18.45■□□□□ 0.54
CLN3-250ENST00000636839 SLC7A7Q9UM01 511 aa18.45■□□□□ 0.54
CLN3-250ENST00000636839 CARD8Q9Y2G2 431 aa18.45■□□□□ 0.54
CLN3-250ENST00000636839 SH3PXD2BA1X283 911 aa18.44■□□□□ 0.54
CLN3-250ENST00000636839 C2orf72A6NCS6 295 aa18.44■□□□□ 0.54
CLN3-250ENST00000636839 CD63P08962 238 aa18.44■□□□□ 0.54
CLN3-250ENST00000636839 HSPA13P48723 471 aa18.44■□□□□ 0.54
CLN3-250ENST00000636839 PNLIPRP2P54317 469 aa18.44■□□□□ 0.54
CLN3-250ENST00000636839 NRG3P56975 720 aa18.44■□□□□ 0.54
CLN3-250ENST00000636839 KCNAB2Q13303 367 aa18.44■□□□□ 0.54
CLN3-250ENST00000636839 SLC36A3Q495N2 470 aa18.44■□□□□ 0.54
CLN3-250ENST00000636839 LYPD8Q6UX82 237 aa18.44■□□□□ 0.54
CLN3-250ENST00000636839 WDR88Q6ZMY6 472 aa18.44■□□□□ 0.54
CLN3-250ENST00000636839 GRAMD2AQ8IUY3 354 aa18.44■□□□□ 0.54
CLN3-250ENST00000636839 OFCC1Q8IZS5 231 aa18.44■□□□□ 0.54
CLN3-250ENST00000636839 OR5L2Q8NGL0 311 aa18.44■□□□□ 0.54
CLN3-250ENST00000636839 SLC41A3Q96GZ6 507 aa18.44■□□□□ 0.54
CLN3-250ENST00000636839 NODALQ96S42 347 aa18.44■□□□□ 0.54
CLN3-250ENST00000636839 P4HTMQ9NXG6 502 aa18.44■□□□□ 0.54
CLN3-250ENST00000636839 PPM1BO75688 479 aa18.44■□□□□ 0.54
CLN3-250ENST00000636839 ITGAMP11215 1152 aa18.44■□□□□ 0.54
CLN3-250ENST00000636839 ADARB1P78563 741 aaKnown RBP18.44■□□□□ 0.54
CLN3-250ENST00000636839 MED21Q13503 144 aa18.44■□□□□ 0.54
CLN3-250ENST00000636839 BICRALQ6AI39 1079 aa18.44■□□□□ 0.54
CLN3-250ENST00000636839 Q6ZPB1 254 aaPredicted RBP18.44■□□□□ 0.54
CLN3-250ENST00000636839 RANBP3LQ86VV4 465 aaPredicted RBP18.44■□□□□ 0.54
CLN3-250ENST00000636839 CHERPQ8IWX8 916 aaKnown RBP18.44■□□□□ 0.54
CLN3-250ENST00000636839 DHRSXQ8N5I4 330 aa18.44■□□□□ 0.54
CLN3-250ENST00000636839 IL22RA1Q8N6P7 574 aa18.44■□□□□ 0.54
CLN3-250ENST00000636839 POGLUT1Q8NBL1 392 aa18.44■□□□□ 0.54
CLN3-250ENST00000636839 GRHL3Q8TE85 626 aa18.44■□□□□ 0.54
CLN3-250ENST00000636839 SH3YL1Q96HL8 342 aaPredicted RBP18.44■□□□□ 0.54
CLN3-250ENST00000636839 GPR87Q9BY21 358 aa18.44■□□□□ 0.54
CLN3-250ENST00000636839 HOXD1Q9GZZ0 328 aa18.44■□□□□ 0.54
CLN3-250ENST00000636839 ARMC7Q9H6L4 198 aa18.44■□□□□ 0.54
CLN3-250ENST00000636839 MMP25Q9NPA2 562 aa18.44■□□□□ 0.54
CLN3-250ENST00000636839 KRT84Q9NSB2 600 aa18.44■□□□□ 0.54
CLN3-250ENST00000636839 CDV3Q9UKY7 258 aaKnown RBP18.44■□□□□ 0.54
CLN3-250ENST00000636839 TMCC3Q9ULS5 477 aa18.44■□□□□ 0.54
CLN3-250ENST00000636839 HEATR5AQ86XA9 2040 aa18.43■□□□□ 0.54
CLN3-250ENST00000636839 A0A087WUU8 490 aa18.43■□□□□ 0.54
CLN3-250ENST00000636839 C21orf140B9A014 251 aa18.43■□□□□ 0.54
CLN3-250ENST00000636839 SCO2O43819 266 aa18.43■□□□□ 0.54
CLN3-250ENST00000636839 OR10H3O60404 316 aa18.43■□□□□ 0.54
CLN3-250ENST00000636839 LYPD3O95274 346 aa18.43■□□□□ 0.54
CLN3-250ENST00000636839 IGHEP01854 428 aa18.43■□□□□ 0.54
CLN3-250ENST00000636839 CBLP22681 906 aa18.43■□□□□ 0.54
CLN3-250ENST00000636839 SRSF6Q13247 344 aaKnown RBP18.43■□□□□ 0.54
CLN3-250ENST00000636839 EXT1Q16394 746 aa18.43■□□□□ 0.54
CLN3-250ENST00000636839 ZNF527Q8NB42 609 aa18.43■□□□□ 0.54
CLN3-250ENST00000636839 RNF217Q8TC41 542 aa18.43■□□□□ 0.54
CLN3-250ENST00000636839 TMEM255BQ8WV15 326 aa18.43■□□□□ 0.54
CLN3-250ENST00000636839 RASL10BQ96S79 203 aa18.43■□□□□ 0.54
CLN3-250ENST00000636839 GPA33Q99795 319 aa18.43■□□□□ 0.54
CLN3-250ENST00000636839 RIBC2Q9H4K1 309 aa18.43■□□□□ 0.54
CLN3-250ENST00000636839 FAM118AQ9NWS6 357 aa18.43■□□□□ 0.54
CLN3-250ENST00000636839 A0A1W2PQ72 361 aa18.42■□□□□ 0.54
CLN3-250ENST00000636839 OR6C70A6NIJ9 312 aa18.42■□□□□ 0.54
CLN3-250ENST00000636839 ADAM10O14672 748 aa18.42■□□□□ 0.54
CLN3-250ENST00000636839 FADS1O60427 444 aa18.42■□□□□ 0.54
CLN3-250ENST00000636839 PDK3Q15120 406 aa18.42■□□□□ 0.54
CLN3-250ENST00000636839 CMPK2Q5EBM0 449 aa18.42■□□□□ 0.54
CLN3-250ENST00000636839 MRGPREQ86SM8 312 aa18.42■□□□□ 0.54
CLN3-250ENST00000636839 DTX1Q86Y01 620 aa18.42■□□□□ 0.54
CLN3-250ENST00000636839 OR4K5Q8NGD3 323 aa18.42■□□□□ 0.54
CLN3-250ENST00000636839 M1APQ8TC57 530 aa18.42■□□□□ 0.54
CLN3-250ENST00000636839 PRSS27Q9BQR3 290 aa18.42■□□□□ 0.54
CLN3-250ENST00000636839 EVI2BP34910 448 aa18.42■□□□□ 0.54
CLN3-250ENST00000636839 CAPGP40121 348 aa18.42■□□□□ 0.54
CLN3-250ENST00000636839 ST3GAL3Q11203 375 aa18.42■□□□□ 0.54
CLN3-250ENST00000636839 SKP2Q13309 424 aa18.42■□□□□ 0.54
CLN3-250ENST00000636839 ATP1A4Q13733 1029 aa18.42■□□□□ 0.54
CLN3-250ENST00000636839 TRAM2Q15035 370 aa18.42■□□□□ 0.54
CLN3-250ENST00000636839 RSPO4Q2I0M5 234 aaPredicted RBP18.42■□□□□ 0.54
CLN3-250ENST00000636839 PGBD2Q6P3X8 592 aa18.42■□□□□ 0.54
CLN3-250ENST00000636839 ZER1Q7Z7L7 766 aa18.42■□□□□ 0.54
CLN3-250ENST00000636839 CADM2Q8N3J6 435 aa18.42■□□□□ 0.54
CLN3-250ENST00000636839 GALNT15Q8N3T1 639 aa18.42■□□□□ 0.54
CLN3-250ENST00000636839 FAM71CQ8NEG0 241 aa18.42■□□□□ 0.54
CLN3-250ENST00000636839 SPTBN2O15020 2390 aa18.41■□□□□ 0.54
CLN3-250ENST00000636839 ZFHX4Q86UP3 3567 aa18.41■□□□□ 0.54
CLN3-250ENST00000636839 GTPBP1O00178 669 aaKnown RBP18.41■□□□□ 0.54
CLN3-250ENST00000636839 FAAHO00519 579 aa18.41■□□□□ 0.54
CLN3-250ENST00000636839 PIP5K1CO60331 668 aa18.41■□□□□ 0.54
CLN3-250ENST00000636839 ITGA10O75578 1167 aa18.41■□□□□ 0.54
CLN3-250ENST00000636839 OR5F1O95221 314 aa18.41■□□□□ 0.54
CLN3-250ENST00000636839 IGFBP1P08833 259 aaPredicted RBP18.41■□□□□ 0.54
CLN3-250ENST00000636839 UBL4AP11441 157 aa18.41■□□□□ 0.54
CLN3-250ENST00000636839 SOX3P41225 446 aa18.41■□□□□ 0.54
CLN3-250ENST00000636839 CCR4P51679 360 aa18.41■□□□□ 0.54
CLN3-250ENST00000636839 SMIM11AP58511 58 aa18.41■□□□□ 0.54
CLN3-250ENST00000636839 ATP1A1-AS1Q5TC04 95 aa18.41■□□□□ 0.54
CLN3-250ENST00000636839 OR5M10Q6IEU7 315 aa18.41■□□□□ 0.54
CLN3-250ENST00000636839 PRICKLE2Q7Z3G6 844 aa18.41■□□□□ 0.54
CLN3-250ENST00000636839 CMIPQ8IY22 773 aa18.41■□□□□ 0.54
CLN3-250ENST00000636839 OR10G3Q8NGC4 313 aa18.41■□□□□ 0.54
CLN3-250ENST00000636839 HGDQ93099 445 aa18.41■□□□□ 0.54
CLN3-250ENST00000636839 TBL1XR1Q9BZK7 514 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms