RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 GATAD2AQ86YP4 633 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 PARP16Q8N5Y8 322 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 POGLUT1Q8NBL1 392 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 OR13C2Q8NGS9 318 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 HTRA1Q92743 480 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 CTHRC1Q96CG8 243 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 C1GALT1C1Q96EU7 318 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 PHF7Q9BWX1 381 aaPredicted RBP9.84□□□□□ -0.83
CUX1-221ENST00000622516 HCAR1Q9BXC0 346 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 UBQLN3Q9H347 655 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 DUSP22Q9NRW4 184 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 IL20Q9NYY1 176 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 DIMT1Q9UNQ2 313 aaKnown RBP9.84□□□□□ -0.83
CUX1-221ENST00000622516 ASCC3Q8N3C0 2202 aaKnown RBP9.84□□□□□ -0.83
CUX1-221ENST00000622516 A8MUA0 341 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 BRINP1O60477 761 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 IFNA16P05015 189 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 PROS1P07225 676 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 LIMS3P0CW19 117 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 LIMS4P0CW20 117 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 FOSL1P15407 271 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 S1PR1P21453 382 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 ALAS2P22557 587 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 CAV3P56539 151 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 RPL6Q02878 288 aaKnown RBP9.84□□□□□ -0.83
CUX1-221ENST00000622516 C1DQ13901 141 aaKnown RBP9.84□□□□□ -0.83
CUX1-221ENST00000622516 OXA1LQ15070 435 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 TMEM53Q6P2H8 277 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 THSD4Q6ZMP0 1018 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 CADM2Q8N3J6 435 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 TMEM239Q8WW34 195 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 OR52D1Q9H346 318 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 HINT3Q9NQE9 182 aaKnown RBP9.84□□□□□ -0.83
CUX1-221ENST00000622516 GPR27Q9NS67 375 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 ERVK13-1Q9NX77 482 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 NLGN3Q9NZ94 848 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 ERVK-19Q9WJR5 959 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 B3GNT3Q9Y2A9 372 aa9.84□□□□□ -0.83
CUX1-221ENST00000622516 MPDZO75970 2070 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 A0A087WV62 115 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 TRAPPC13A5PLN9 417 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 FAM221BA6H8Z2 402 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 LRRN3E7EW58 273 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 CSF2P04141 144 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 TSPAN19P0C672 248 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 SLC35E2P0CK97 266 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 PPP5CP53041 499 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 RPS25P62851 125 aaKnown RBP9.83□□□□□ -0.84
CUX1-221ENST00000622516 COL19A1Q14993 1142 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 AMZ1Q400G9 498 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 KLHL12Q53G59 568 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 GHDCQ8N2G8 530 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 ARHGEF39Q8N4T4 335 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 GATSQ8NAP1 163 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 RCBTB1Q8NDN9 531 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 OR51G2Q8NGK0 314 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 OSTF1Q92882 214 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 HSPA12BQ96MM6 686 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 DCLRE1CQ96SD1 692 aaKnown RBP9.83□□□□□ -0.84
CUX1-221ENST00000622516 LRRN3Q9H3W5 708 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 UBE2ZQ9H832 354 aaPredicted RBP9.83□□□□□ -0.84
CUX1-221ENST00000622516 MEPEQ9NQ76 525 aaPredicted RBP9.83□□□□□ -0.84
CUX1-221ENST00000622516 C14orf119Q9NWQ9 140 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 SIDT1Q9NXL6 827 aaKnown RBP9.83□□□□□ -0.84
CUX1-221ENST00000622516 LRIT1Q9P2V4 623 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 ZMAT5Q9UDW3 170 aaKnown RBP9.83□□□□□ -0.84
CUX1-221ENST00000622516 A8MU76 341 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 KLF4O43474 513 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 GMFGO60234 142 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 CDRT1O95170 752 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 CLUP10909 449 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 OR1D4P47884 311 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 BCAP31P51572 246 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 FOXL2P58012 376 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 FZD5Q13467 585 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 PGGHGQ32M88 737 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 STEAP3Q658P3 488 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 GJD3Q8N144 294 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 CYB561A3Q8NBI2 242 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 NLGN4YQ8NFZ3 816 aaPredicted RBP9.83□□□□□ -0.84
CUX1-221ENST00000622516 OR2T33Q8NG76 320 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 ZDHHC19Q8WVZ1 309 aaPredicted RBP9.83□□□□□ -0.84
CUX1-221ENST00000622516 NELL2Q99435 816 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 FOLH1BQ9HBA9 442 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 TBCCD1Q9NVR7 557 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 FLRT3Q9NZU0 649 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 FBXL4Q9UKA2 621 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 CLCA3PQ9Y6N3 262 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 CACNA1CQ13936 2221 aa9.83□□□□□ -0.84
CUX1-221ENST00000622516 HYKKA2RU49 373 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 CBFA2T3O75081 653 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 GYPBP06028 91 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 THBS1P07996 1170 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 GLULP15104 373 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 SOX6P35712 828 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 STAT5AP42229 794 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 CAPZBP47756 277 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 ELOCQ15369 112 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 TIMM50Q3ZCQ8 353 aa9.82□□□□□ -0.84
CUX1-221ENST00000622516 KLHL22Q53GT1 634 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 192.7 ms