RNA–Protein interactions for RNA: ENST00000397200.8

CAPN3-207, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-207ENST00000397200 WFDC6Q9BQY6 131 aa13.76□□□□□ -0.21
CAPN3-207ENST00000397200 NAA50Q9GZZ1 169 aaKnown RBP13.76□□□□□ -0.21
CAPN3-207ENST00000397200 OR10A5Q9H207 317 aa13.76□□□□□ -0.21
CAPN3-207ENST00000397200 LIN28AQ9H9Z2 209 aaKnown RBP13.76□□□□□ -0.21
CAPN3-207ENST00000397200 ERVK-18Q9QC07 812 aa13.76□□□□□ -0.21
CAPN3-207ENST00000397200 MGAT4BQ9UQ53 548 aa13.76□□□□□ -0.21
CAPN3-207ENST00000397200 KCNE3Q9Y6H6 103 aa13.76□□□□□ -0.21
CAPN3-207ENST00000397200 NSG1A0A0A6YYJ2 146 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 PTGES3LE9PB15 166 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 FAM20BO75063 409 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 AGR2O95994 175 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 IGKV3-11P04433 115 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 MASP1P48740 699 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 SLC26A5P58743 744 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 SRSF6Q13247 344 aaKnown RBP13.75□□□□□ -0.21
CAPN3-207ENST00000397200 SEC23BQ15437 767 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 NPTX1Q15818 432 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 SMN1Q16637 294 aaKnown RBP13.75□□□□□ -0.21
CAPN3-207ENST00000397200 RBM45Q8IUH3 476 aaKnown RBP13.75□□□□□ -0.21
CAPN3-207ENST00000397200 TAGAPQ8N103 731 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 SVOPQ8N4V2 548 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 ZNF321PQ8N8H1 164 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 NFAM1Q8NET5 270 aaPredicted RBP13.75□□□□□ -0.21
CAPN3-207ENST00000397200 FAM81AQ8TBF8 368 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 ADAMTS17Q8TE56 1095 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 UBE2FQ969M7 185 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 PRRC1Q96M27 445 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 ARHGDIGQ99819 225 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 BCL7BQ9BQE9 202 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 YIPF4Q9BSR8 244 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 DGCR6LQ9BY27 220 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 EQTNQ9NQ60 294 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 P4HTMQ9NXG6 502 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 ZNF226Q9NYT6 803 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 RHCGQ9UBD6 479 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 AASSQ9UDR5 926 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 FBXL4Q9UKA2 621 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 PPIEQ9UNP9 301 aaKnown RBP13.75□□□□□ -0.21
CAPN3-207ENST00000397200 SLC9A8Q9Y2E8 581 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 SH3PXD2BA1X283 911 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 CDC14CA4D256 554 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 ZNF99A8MXY4 864 aaPredicted RBP13.75□□□□□ -0.21
CAPN3-207ENST00000397200 M0R3H8 397 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 RGS10O43665 173 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 HPP00738 406 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 GASTP01350 101 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 MT-ND2P03891 347 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 SLC37A1P57057 533 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 DUSP8Q13202 625 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 ATP1A4Q13733 1029 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 EXT1Q16394 746 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 BTBD16Q32M84 506 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 DCST1Q5T197 706 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 SYT6Q5T7P8 510 aaPredicted RBP13.75□□□□□ -0.21
CAPN3-207ENST00000397200 CCDC103Q8IW40 242 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 LINC00471Q8N535 108 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 ZNF615Q8N8J6 731 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 VANGL1Q8TAA9 524 aaPredicted RBP13.75□□□□□ -0.21
CAPN3-207ENST00000397200 NR4A3Q92570 626 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 OTUB1Q96FW1 271 aaPredicted RBP13.75□□□□□ -0.21
CAPN3-207ENST00000397200 VMP1Q96GC9 406 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 NUDT9Q9BW91 350 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 ZNF160Q9HCG1 818 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 MAN2C1Q9NTJ4 1040 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 REV1Q9UBZ9 1251 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 PRODH2Q9UF12 536 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 PSORS1C1Q9UIG5 152 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 TMCC3Q9ULS5 477 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 CFL2Q9Y281 166 aa13.75□□□□□ -0.21
CAPN3-207ENST00000397200 CACNA1AO00555 2505 aa13.74□□□□□ -0.21
CAPN3-207ENST00000397200 DUXAA6NLW8 204 aa13.74□□□□□ -0.21
CAPN3-207ENST00000397200 ZNF891A8MT65 544 aaPredicted RBP13.74□□□□□ -0.21
CAPN3-207ENST00000397200 NOL3O60936 208 aaKnown RBP13.74□□□□□ -0.21
CAPN3-207ENST00000397200 INMTO95050 263 aa13.74□□□□□ -0.21
CAPN3-207ENST00000397200 ZIC2O95409 532 aaPredicted RBP13.74□□□□□ -0.21
CAPN3-207ENST00000397200 CLPSP04118 112 aa13.74□□□□□ -0.21
CAPN3-207ENST00000397200 CHMP24386 653 aa13.74□□□□□ -0.21
CAPN3-207ENST00000397200 PRKAR1BP31321 381 aa13.74□□□□□ -0.21
CAPN3-207ENST00000397200 EMDP50402 254 aa13.74□□□□□ -0.21
CAPN3-207ENST00000397200 GPR143P51810 404 aa13.74□□□□□ -0.21
CAPN3-207ENST00000397200 CRISP1P54107 249 aa13.74□□□□□ -0.21
CAPN3-207ENST00000397200 ZNF155Q12901 538 aaPredicted RBP13.74□□□□□ -0.21
CAPN3-207ENST00000397200 GPAT3Q53EU6 434 aa13.74□□□□□ -0.21
CAPN3-207ENST00000397200 PLAG1Q6DJT9 500 aa13.74□□□□□ -0.21
CAPN3-207ENST00000397200 PGBD2Q6P3X8 592 aa13.74□□□□□ -0.21
CAPN3-207ENST00000397200 CD300LDQ6UXZ3 194 aa13.74□□□□□ -0.21
CAPN3-207ENST00000397200 DEF8Q6ZN54 512 aa13.74□□□□□ -0.21
CAPN3-207ENST00000397200 SLC16A12Q6ZSM3 486 aa13.74□□□□□ -0.21
CAPN3-207ENST00000397200 OLIG3Q7RTU3 272 aa13.74□□□□□ -0.21
CAPN3-207ENST00000397200 ANKRD13BQ86YJ7 626 aa13.74□□□□□ -0.21
CAPN3-207ENST00000397200 APCDD1LQ8NCL9 501 aa13.74□□□□□ -0.21
CAPN3-207ENST00000397200 ZNF540Q8NDQ6 660 aa13.74□□□□□ -0.21
CAPN3-207ENST00000397200 C16orf52Q8NHV5 167 aa13.74□□□□□ -0.21
CAPN3-207ENST00000397200 GTPBP3Q969Y2 492 aaKnown RBP13.74□□□□□ -0.21
CAPN3-207ENST00000397200 IMMP1LQ96LU5 166 aa13.74□□□□□ -0.21
CAPN3-207ENST00000397200 CCNL2Q96S94 520 aaPredicted RBP13.74□□□□□ -0.21
CAPN3-207ENST00000397200 RHNO1Q9BSD3 238 aa13.74□□□□□ -0.21
CAPN3-207ENST00000397200 SEMA4CQ9C0C4 833 aa13.74□□□□□ -0.21
CAPN3-207ENST00000397200 CEP295Q9C0D2 2601 aa13.74□□□□□ -0.21
CAPN3-207ENST00000397200 RASSF1Q9NS23 344 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms