RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 FAM35AQ86V20 835 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 MMP21Q8N119 569 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 OR5L2Q8NGL0 311 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 SLC35F5Q8WV83 523 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 URM1Q9BTM9 101 aaKnown RBP8.34□□□□□ -1.07
VPS13D-212ENST00000543766 PTGES2Q9H7Z7 377 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 NMNAT1Q9HAN9 279 aaPredicted RBP8.34□□□□□ -1.07
VPS13D-212ENST00000543766 NPAP1Q9NZP6 1156 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 MRPS18CQ9Y3D5 142 aaKnown RBP8.34□□□□□ -1.07
VPS13D-212ENST00000543766 CLDN16Q9Y5I7 305 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 MYH9P35579 1960 aaKnown RBP8.34□□□□□ -1.07
VPS13D-212ENST00000543766 DNAJC25-GNG10A0A024R161 153 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 LCATP04180 440 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 OR8U8P0C7N1 319 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 SSTR1P30872 391 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 SOX18P35713 384 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 RPL29P47914 159 aaKnown RBP8.34□□□□□ -1.07
VPS13D-212ENST00000543766 ARRB1P49407 418 aaPredicted RBP8.34□□□□□ -1.07
VPS13D-212ENST00000543766 IDH3AP50213 366 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 PLK1P53350 603 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 AESQ08117 197 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 MPEG1Q2M385 716 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 GXYLT1Q4G148 440 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 AKR1C8PQ5T2L2 129 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 ATG4DQ86TL0 474 aaPredicted RBP8.34□□□□□ -1.07
VPS13D-212ENST00000543766 OR8U1Q8NH10 309 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 ADAMTS15Q8TE58 950 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 RORBQ92753 470 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 FKBP10Q96AY3 582 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 SLCO4A1Q96BD0 722 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 LINC00615Q96LM1 132 aaPredicted RBP8.34□□□□□ -1.07
VPS13D-212ENST00000543766 SLC6A7Q99884 636 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 FNDC11Q9BVV2 318 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 SRRQ9GZT4 340 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 TMEM248Q9NWD8 314 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 E5RGE8 158 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 F6UZH7 168 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 EI24O14681 340 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 ICOSLGO75144 302 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 BANF1O75531 89 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 MT-ND5P03915 603 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 RPLP0P05388 317 aaKnown RBP8.34□□□□□ -1.07
VPS13D-212ENST00000543766 BPGMP07738 259 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 HLA-GP17693 338 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 CNR1P21554 472 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 CYP7A1P22680 504 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 RPL4P36578 427 aaKnown RBP8.34□□□□□ -1.07
VPS13D-212ENST00000543766 PBX3P40426 434 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 RORCP51449 518 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 FMO1Q01740 532 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 ZNF181Q2M3W8 571 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 CDNFQ49AH0 187 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 CARD17Q5XLA6 110 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 TMPRSS11FQ6ZWK6 438 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 EXD3Q8N9H8 876 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 C18orf25Q96B23 403 aaPredicted RBP8.34□□□□□ -1.07
VPS13D-212ENST00000543766 WDFY2Q96P53 400 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 MTERF1Q99551 399 aaKnown RBP8.34□□□□□ -1.07
VPS13D-212ENST00000543766 NPAS2Q99743 824 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 SEMA6CQ9H3T2 930 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 IL26Q9NPH9 171 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 B3GAT2Q9NPZ5 323 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 C2orf42Q9NWW7 574 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 LRP2BPQ9P2M1 347 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 KAT6AQ92794 2004 aa8.34□□□□□ -1.07
VPS13D-212ENST00000543766 MGAT4DA6NG13 374 aa8.33□□□□□ -1.08
VPS13D-212ENST00000543766 BNIP3LO60238 219 aa8.33□□□□□ -1.08
VPS13D-212ENST00000543766 SIX6O95475 246 aa8.33□□□□□ -1.08
VPS13D-212ENST00000543766 PSMB6P28072 239 aa8.33□□□□□ -1.08
VPS13D-212ENST00000543766 CD80P33681 288 aa8.33□□□□□ -1.08
VPS13D-212ENST00000543766 RRAS2P62070 204 aaPredicted RBP8.33□□□□□ -1.08
VPS13D-212ENST00000543766 RUNX2Q13950 521 aa8.33□□□□□ -1.08
VPS13D-212ENST00000543766 CEACAM7Q14002 265 aa8.33□□□□□ -1.08
VPS13D-212ENST00000543766 PSMD5Q16401 504 aa8.33□□□□□ -1.08
VPS13D-212ENST00000543766 WDR74Q6RFH5 385 aaPredicted RBP8.33□□□□□ -1.08
VPS13D-212ENST00000543766 MYPOPQ86VE0 399 aaPredicted RBP8.33□□□□□ -1.08
VPS13D-212ENST00000543766 CRLF3Q8IUI8 442 aa8.33□□□□□ -1.08
VPS13D-212ENST00000543766 BOLLQ8N9W6 283 aaKnown RBP8.33□□□□□ -1.08
VPS13D-212ENST00000543766 NHLRC2Q8NBF2 726 aa8.33□□□□□ -1.08
VPS13D-212ENST00000543766 HYLS1Q96M11 299 aa8.33□□□□□ -1.08
VPS13D-212ENST00000543766 SGPP1Q9BX95 441 aa8.33□□□□□ -1.08
VPS13D-212ENST00000543766 RAB1BQ9H0U4 201 aa8.33□□□□□ -1.08
VPS13D-212ENST00000543766 UPF3AQ9H1J1 476 aaKnown RBP8.33□□□□□ -1.08
VPS13D-212ENST00000543766 IL21RQ9HBE5 538 aa8.33□□□□□ -1.08
VPS13D-212ENST00000543766 RAB18Q9NP72 206 aa8.33□□□□□ -1.08
VPS13D-212ENST00000543766 TBX20Q9UMR3 447 aa8.33□□□□□ -1.08
VPS13D-212ENST00000543766 SIPA1L1O43166 1804 aa8.33□□□□□ -1.08
VPS13D-212ENST00000543766 EIF1AYO14602 144 aaKnown RBP8.33□□□□□ -1.08
VPS13D-212ENST00000543766 VPS26AO75436 327 aa8.33□□□□□ -1.08
VPS13D-212ENST00000543766 AMD1P17707 334 aa8.33□□□□□ -1.08
VPS13D-212ENST00000543766 OMGP23515 440 aa8.33□□□□□ -1.08
VPS13D-212ENST00000543766 GKP32189 559 aa8.33□□□□□ -1.08
VPS13D-212ENST00000543766 KHKP50053 298 aa8.33□□□□□ -1.08
VPS13D-212ENST00000543766 RAB9AP51151 201 aa8.33□□□□□ -1.08
VPS13D-212ENST00000543766 RAB25P57735 213 aa8.33□□□□□ -1.08
VPS13D-212ENST00000543766 RAB11AP62491 216 aa8.33□□□□□ -1.08
VPS13D-212ENST00000543766 SPP2Q13103 211 aa8.33□□□□□ -1.08
VPS13D-212ENST00000543766 RAB11BQ15907 218 aa8.33□□□□□ -1.08
VPS13D-212ENST00000543766 TMEM249Q2WGJ8 235 aa8.33□□□□□ -1.08
VPS13D-212ENST00000543766 CLLU1Q5K131 121 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms