RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 ST7LQ8TDW4 575 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 FRZBQ92765 325 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 NEDD4LQ96PU5 975 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 CNN2Q99439 309 aaKnown RBP8.19□□□□□ -1.1
RTN3-202ENST00000339997 PINK1Q9BXM7 581 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 ENY2Q9NPA8 101 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 BTNL2Q9UIR0 455 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 B3GNT3Q9Y2A9 372 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 DOCK2Q92608 1830 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 MYH9P35579 1960 aaKnown RBP8.19□□□□□ -1.1
RTN3-202ENST00000339997 MUSKO15146 869 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 SLC16A5O15375 505 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 GPR32O75388 356 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 PRKRAO75569 313 aaKnown RBP8.19□□□□□ -1.1
RTN3-202ENST00000339997 TSPAN15O95858 294 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 CFIP05156 583 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 IGFBP6P24592 240 aaPredicted RBP8.19□□□□□ -1.1
RTN3-202ENST00000339997 CHRNB4P30926 498 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 SRP9P49458 86 aaKnown RBP8.19□□□□□ -1.1
RTN3-202ENST00000339997 CXADRP78310 365 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 SSX2Q16385 188 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 ZNF805Q5CZA5 627 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 ZNF585AQ6P3V2 769 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 OR13C3Q8NGS6 347 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 LMX1AQ8TE12 382 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 GLYATL2Q8WU03 294 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 TEPSINQ96N21 525 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 SERINC1Q9NRX5 453 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 WASF3Q9UPY6 502 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 NUMBLQ9Y6R0 609 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 ITGB4P16144 1822 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 ANKRD61A6NGH8 418 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 IFNA10P01566 189 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 IGFBP1P08833 259 aaPredicted RBP8.19□□□□□ -1.1
RTN3-202ENST00000339997 SHC1P29353 583 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 DLSTP36957 453 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 GIPRP48546 466 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 CLDN2P57739 230 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 EEF1A2Q05639 463 aaKnown RBP8.19□□□□□ -1.1
RTN3-202ENST00000339997 SPATS1Q496A3 300 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 KCTD18Q6PI47 426 aaPredicted RBP8.19□□□□□ -1.1
RTN3-202ENST00000339997 LYPD4Q6UWN0 246 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 UNQ6126/PRO20091Q6UXV3 157 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 PRSS45Q7RTY3 260 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 BTLAQ7Z6A9 289 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 C7orf61Q8IZ16 206 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 LRRC25Q8N386 305 aaPredicted RBP8.19□□□□□ -1.1
RTN3-202ENST00000339997 ZNF775Q96BV0 537 aaPredicted RBP8.19□□□□□ -1.1
RTN3-202ENST00000339997 SGTBQ96EQ0 304 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 SLA2Q9H6Q3 261 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 NOX3Q9HBY0 568 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 PHLPP1O60346 1717 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 OTOL1A6NHN0 477 aaPredicted RBP8.19□□□□□ -1.1
RTN3-202ENST00000339997 OR6C65A6NJZ3 312 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 H7C1C5 153 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 FGF18O76093 207 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 TPPPO94811 219 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 PIM1P11309 404 aaPredicted RBP8.19□□□□□ -1.1
RTN3-202ENST00000339997 EPHA1P21709 976 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 ALDH3B1P43353 468 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 LCN6P62502 163 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 TPGS2Q68CL5 300 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 BORAQ6PGQ7 559 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 MEX3BQ6ZN04 569 aaKnown RBP8.19□□□□□ -1.1
RTN3-202ENST00000339997 ZER1Q7Z7L7 766 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 ZFP82Q8N141 532 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 LILRA3Q8N6C8 439 aaPredicted RBP8.19□□□□□ -1.1
RTN3-202ENST00000339997 TOR1AIP2Q8NFQ8 470 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 SYNPRQ8TBG9 265 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 C15orf40Q8WUR7 153 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 GIMAP1Q8WWP7 306 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 NECAB3Q96P71 396 aaPredicted RBP8.19□□□□□ -1.1
RTN3-202ENST00000339997 SYT17Q9BSW7 474 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 RAB11FIP5Q9BXF6 653 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 ZNF442Q9H7R0 627 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 PDLIM7Q9NR12 457 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 PLSCR3Q9NRY6 295 aa8.19□□□□□ -1.1
RTN3-202ENST00000339997 ZNF487B1APH4 448 aa8.18□□□□□ -1.1
RTN3-202ENST00000339997 B8ZZF3 427 aa8.18□□□□□ -1.1
RTN3-202ENST00000339997 CACNG3O60359 315 aa8.18□□□□□ -1.1
RTN3-202ENST00000339997 FADS1O60427 444 aa8.18□□□□□ -1.1
RTN3-202ENST00000339997 GLI4P10075 376 aa8.18□□□□□ -1.1
RTN3-202ENST00000339997 HNRNPFP52597 415 aaKnown RBP8.18□□□□□ -1.1
RTN3-202ENST00000339997 SPOCK1Q08629 439 aa8.18□□□□□ -1.1
RTN3-202ENST00000339997 GNMTQ14749 295 aa8.18□□□□□ -1.1
RTN3-202ENST00000339997 ZNF674Q2M3X9 581 aa8.18□□□□□ -1.1
RTN3-202ENST00000339997 ZNF792Q3KQV3 632 aa8.18□□□□□ -1.1
RTN3-202ENST00000339997 KANSL1Q7Z3B3 1105 aa8.18□□□□□ -1.1
RTN3-202ENST00000339997 SYT9Q86SS6 491 aa8.18□□□□□ -1.1
RTN3-202ENST00000339997 MS4A15Q8N5U1 240 aa8.18□□□□□ -1.1
RTN3-202ENST00000339997 KLHDC9Q8NEP7 349 aa8.18□□□□□ -1.1
RTN3-202ENST00000339997 KHSRPQ92945 711 aaKnown RBP eCLIP8.18□□□□□ -1.12e-6■■□□□ 11.6
RTN3-202ENST00000339997 HHIPL1Q96JK4 782 aa8.18□□□□□ -1.1
RTN3-202ENST00000339997 KLHL15Q96M94 604 aa8.18□□□□□ -1.1
RTN3-202ENST00000339997 ARHGAP9Q9BRR9 750 aa8.18□□□□□ -1.1
RTN3-202ENST00000339997 PRTFDC1Q9NRG1 225 aa8.18□□□□□ -1.1
RTN3-202ENST00000339997 EP300Q09472 2414 aaPredicted RBP8.18□□□□□ -1.1
RTN3-202ENST00000339997 A0A1W2PQU0 124 aa8.18□□□□□ -1.1
RTN3-202ENST00000339997 F5H5P2 479 aa8.18□□□□□ -1.1
RTN3-202ENST00000339997 SEC14L5O43304 696 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms