RNA–Protein interactions for RNA: ENST00000629179.1

PNKP-223, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 4

Gene PNKP, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-223ENST00000629179 NAXEQ8NCW5 288 aa12.87□□□□□ -0.35
PNKP-223ENST00000629179 OR5D16Q8NGK9 328 aa12.87□□□□□ -0.35
PNKP-223ENST00000629179 OR5M1Q8NGP8 315 aa12.87□□□□□ -0.35
PNKP-223ENST00000629179 SH3GL2Q99962 352 aa12.87□□□□□ -0.35
PNKP-223ENST00000629179 TUBA1CQ9BQE3 449 aa12.87□□□□□ -0.35
PNKP-223ENST00000629179 G6PC3Q9BUM1 346 aa12.87□□□□□ -0.35
PNKP-223ENST00000629179 SERHL2Q9H4I8 314 aa12.87□□□□□ -0.35
PNKP-223ENST00000629179 PTGES2Q9H7Z7 377 aa12.87□□□□□ -0.35
PNKP-223ENST00000629179 UBQLN4Q9NRR5 601 aa12.87□□□□□ -0.35
PNKP-223ENST00000629179 ARGLU1Q9NWB6 273 aaPredicted RBP12.87□□□□□ -0.35
PNKP-223ENST00000629179 PCDHGB4Q9UN71 923 aa12.87□□□□□ -0.35
PNKP-223ENST00000629179 GPR45Q9Y5Y3 372 aa12.87□□□□□ -0.35
PNKP-223ENST00000629179 ADGRG4Q8IZF6 3080 aa12.86□□□□□ -0.35
PNKP-223ENST00000629179 IGLV3-32A0A0A0MS00 114 aa12.86□□□□□ -0.35
PNKP-223ENST00000629179 RNF103-CHMP3A0A140T963 221 aa12.86□□□□□ -0.35
PNKP-223ENST00000629179 HSPB2A8KAH6 182 aa12.86□□□□□ -0.35
PNKP-223ENST00000629179 FAM47E-STBD1D6RA91 191 aa12.86□□□□□ -0.35
PNKP-223ENST00000629179 E9PBE3 544 aa12.86□□□□□ -0.35
PNKP-223ENST00000629179 H0Y3Z8 333 aa12.86□□□□□ -0.35
PNKP-223ENST00000629179 ZNF195O14628 629 aa12.86□□□□□ -0.35
PNKP-223ENST00000629179 KRT16P08779 473 aa12.86□□□□□ -0.35
PNKP-223ENST00000629179 HPGDP15428 266 aa12.86□□□□□ -0.35
PNKP-223ENST00000629179 MATN1P21941 496 aa12.86□□□□□ -0.35
PNKP-223ENST00000629179 CHMP24386 653 aa12.86□□□□□ -0.35
PNKP-223ENST00000629179 LCN1P31025 176 aa12.86□□□□□ -0.35
PNKP-223ENST00000629179 S100A3P33764 101 aa12.86□□□□□ -0.35
PNKP-223ENST00000629179 TIMP3P35625 211 aa12.86□□□□□ -0.35
PNKP-223ENST00000629179 CLDN18P56856 261 aa12.86□□□□□ -0.35
PNKP-223ENST00000629179 TFF3Q07654 80 aa12.86□□□□□ -0.35
PNKP-223ENST00000629179 RCAN2Q14206 197 aa12.86□□□□□ -0.35
PNKP-223ENST00000629179 HSPB2Q16082 182 aa12.86□□□□□ -0.35
PNKP-223ENST00000629179 DCST2Q5T1A1 773 aa12.86□□□□□ -0.35
PNKP-223ENST00000629179 AAGABQ6PD74 315 aa12.86□□□□□ -0.35
PNKP-223ENST00000629179 BHLHB9Q6PI77 547 aa12.86□□□□□ -0.35
PNKP-223ENST00000629179 MEX3BQ6ZN04 569 aaKnown RBP12.86□□□□□ -0.35
PNKP-223ENST00000629179 MCEMP1Q8IX19 187 aa12.86□□□□□ -0.35
PNKP-223ENST00000629179 VPS37AQ8NEZ2 397 aa12.86□□□□□ -0.35
PNKP-223ENST00000629179 PIWIL2Q8TC59 973 aaKnown RBP12.86□□□□□ -0.35
PNKP-223ENST00000629179 ZPLD1Q8TCW7 415 aa12.86□□□□□ -0.35
PNKP-223ENST00000629179 C1GALT1C1Q96EU7 318 aa12.86□□□□□ -0.35
PNKP-223ENST00000629179 MAELQ96JY0 434 aaKnown RBP12.86□□□□□ -0.35
PNKP-223ENST00000629179 MARK4Q96L34 752 aa12.86□□□□□ -0.35
PNKP-223ENST00000629179 ENKD1Q9H0I2 346 aa12.86□□□□□ -0.35
PNKP-223ENST00000629179 RUBCNLQ9H714 662 aa12.86□□□□□ -0.35
PNKP-223ENST00000629179 CALHM2Q9HA72 323 aa12.86□□□□□ -0.35
PNKP-223ENST00000629179 NPDC1Q9NQX5 325 aaPredicted RBP12.86□□□□□ -0.35
PNKP-223ENST00000629179 ZNF337Q9Y3M9 751 aa12.86□□□□□ -0.35
PNKP-223ENST00000629179 DCHS2Q6V1P9 2916 aa12.85□□□□□ -0.35
PNKP-223ENST00000629179 OR2M5A3KFT3 312 aa12.85□□□□□ -0.35
PNKP-223ENST00000629179 CD8B2A6NJW9 211 aa12.85□□□□□ -0.35
PNKP-223ENST00000629179 SHISA8B8ZZ34 492 aa12.85□□□□□ -0.35
PNKP-223ENST00000629179 SCDO00767 359 aa12.85□□□□□ -0.35
PNKP-223ENST00000629179 IL2RAP01589 272 aa12.85□□□□□ -0.35
PNKP-223ENST00000629179 ZNF708P17019 499 aa12.85□□□□□ -0.35
PNKP-223ENST00000629179 ATP6V1C1P21283 382 aa12.85□□□□□ -0.35
PNKP-223ENST00000629179 UQCRC2P22695 453 aa12.85□□□□□ -0.35
PNKP-223ENST00000629179 RNF144AP50876 292 aaPredicted RBP12.85□□□□□ -0.35
PNKP-223ENST00000629179 GANABQ14697 944 aaKnown RBP12.85□□□□□ -0.35
PNKP-223ENST00000629179 CD226Q15762 336 aa12.85□□□□□ -0.35
PNKP-223ENST00000629179 DPY19L1Q2PZI1 675 aa12.85□□□□□ -0.35
PNKP-223ENST00000629179 RAET1LQ5VY80 246 aa12.85□□□□□ -0.35
PNKP-223ENST00000629179 ARSKQ6UWY0 536 aa12.85□□□□□ -0.35
PNKP-223ENST00000629179 GOLGA6L1Q8N7Z2 621 aa12.85□□□□□ -0.35
PNKP-223ENST00000629179 C9orf106Q8NAJ2 232 aa12.85□□□□□ -0.35
PNKP-223ENST00000629179 ACBD4Q8NC06 268 aa12.85□□□□□ -0.35
PNKP-223ENST00000629179 LRRC8CQ8TDW0 803 aa12.85□□□□□ -0.35
PNKP-223ENST00000629179 ACTRT2Q8TDY3 377 aa12.85□□□□□ -0.35
PNKP-223ENST00000629179 SH3YL1Q96HL8 342 aaPredicted RBP12.85□□□□□ -0.35
PNKP-223ENST00000629179 SLC35G5Q96KT7 338 aa12.85□□□□□ -0.35
PNKP-223ENST00000629179 OR52B2Q96RD2 323 aa12.85□□□□□ -0.35
PNKP-223ENST00000629179 KLHDC3Q9BQ90 382 aa12.85□□□□□ -0.35
PNKP-223ENST00000629179 VIPAS39Q9H9C1 493 aa12.85□□□□□ -0.35
PNKP-223ENST00000629179 SLCO1B3Q9NPD5 702 aa12.85□□□□□ -0.35
PNKP-223ENST00000629179 VDAC3Q9Y277 283 aa12.85□□□□□ -0.35
PNKP-223ENST00000629179 USH1CQ9Y6N9 552 aa12.85□□□□□ -0.35
PNKP-223ENST00000629179 SPG11Q96JI7 2443 aa12.85□□□□□ -0.35
PNKP-223ENST00000629179 AKAP6Q13023 2319 aa12.85□□□□□ -0.35
PNKP-223ENST00000629179 ANKHD1Q8IWZ3 2542 aaKnown RBP12.85□□□□□ -0.35
PNKP-223ENST00000629179 A0A1W2PQD3 144 aa12.84□□□□□ -0.35
PNKP-223ENST00000629179 MBD3L4A6NDZ8 208 aaPredicted RBP12.84□□□□□ -0.35
PNKP-223ENST00000629179 MBD3L3A6NE82 208 aaPredicted RBP12.84□□□□□ -0.35
PNKP-223ENST00000629179 MBD3L5A6NJ08 208 aaPredicted RBP12.84□□□□□ -0.35
PNKP-223ENST00000629179 CLCA1A8K7I4 914 aa12.84□□□□□ -0.35
PNKP-223ENST00000629179 DIAPH2O60879 1101 aa12.84□□□□□ -0.35
PNKP-223ENST00000629179 SOX30O94993 753 aa12.84□□□□□ -0.35
PNKP-223ENST00000629179 C1QCP02747 245 aa12.84□□□□□ -0.35
PNKP-223ENST00000629179 PEPDP12955 493 aa12.84□□□□□ -0.35
PNKP-223ENST00000629179 POU3F2P20265 443 aaPredicted RBP12.84□□□□□ -0.35
PNKP-223ENST00000629179 BMP5P22003 454 aa12.84□□□□□ -0.35
PNKP-223ENST00000629179 MSX1P28360 303 aa12.84□□□□□ -0.35
PNKP-223ENST00000629179 AGFG1P52594 562 aaKnown RBP12.84□□□□□ -0.35
PNKP-223ENST00000629179 ZNF136P52737 540 aa12.84□□□□□ -0.35
PNKP-223ENST00000629179 SLC25A35Q3KQZ1 300 aa12.84□□□□□ -0.35
PNKP-223ENST00000629179 POMZP3Q6PJE2 187 aa12.84□□□□□ -0.35
PNKP-223ENST00000629179 OLIG3Q7RTU3 272 aa12.84□□□□□ -0.35
PNKP-223ENST00000629179 ADGRE4PQ86SQ3 457 aa12.84□□□□□ -0.35
PNKP-223ENST00000629179 UBQLNLQ8IYU4 475 aa12.84□□□□□ -0.35
PNKP-223ENST00000629179 ZNF295-AS1Q8N0V1 137 aa12.84□□□□□ -0.35
PNKP-223ENST00000629179 RELL2Q8NC24 303 aaPredicted RBP12.84□□□□□ -0.35
PNKP-223ENST00000629179 MBD3L2Q8NHZ7 208 aaPredicted RBP12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 156.2 ms