RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 DAZAP2Q15038 168 aaPredicted RBP13.6□□□□□ -0.23
LIG1-215ENST00000597901 TMEM44Q2T9K0 475 aa13.6□□□□□ -0.23
LIG1-215ENST00000597901 SMU1Q2TAY7 513 aa13.6□□□□□ -0.23
LIG1-215ENST00000597901 FLYWCH1Q4VC44 716 aa13.6□□□□□ -0.23
LIG1-215ENST00000597901 CCNJQ5T5M9 372 aa13.6□□□□□ -0.23
LIG1-215ENST00000597901 DCHS2Q6V1P9 2916 aa13.6□□□□□ -0.23
LIG1-215ENST00000597901 P4HA3Q7Z4N8 544 aa13.6□□□□□ -0.23
LIG1-215ENST00000597901 GCNT2Q8N0V5 402 aa13.6□□□□□ -0.23
LIG1-215ENST00000597901 COX18Q8N8Q8 333 aa13.6□□□□□ -0.23
LIG1-215ENST00000597901 LINC01560Q8TB33 94 aa13.6□□□□□ -0.23
LIG1-215ENST00000597901 JADE3Q92613 823 aa13.6□□□□□ -0.23
LIG1-215ENST00000597901 STACQ99469 402 aa13.6□□□□□ -0.23
LIG1-215ENST00000597901 DUSP26Q9BV47 211 aa13.6□□□□□ -0.23
LIG1-215ENST00000597901 BHLHE41Q9C0J9 482 aaPredicted RBP13.6□□□□□ -0.23
LIG1-215ENST00000597901 ACBD3Q9H3P7 528 aa13.6□□□□□ -0.23
LIG1-215ENST00000597901 HHATLQ9HCP6 504 aa13.6□□□□□ -0.23
LIG1-215ENST00000597901 DUSP22Q9NRW4 184 aa13.6□□□□□ -0.23
LIG1-215ENST00000597901 RASSF1Q9NS23 344 aa13.6□□□□□ -0.23
LIG1-215ENST00000597901 GIN1Q9NXP7 522 aa13.6□□□□□ -0.23
LIG1-215ENST00000597901 RAP2CQ9Y3L5 183 aa13.6□□□□□ -0.23
LIG1-215ENST00000597901 AP4B1Q9Y6B7 739 aa13.6□□□□□ -0.23
LIG1-215ENST00000597901 INTS1Q8N201 2190 aaKnown RBP13.59□□□□□ -0.23
LIG1-215ENST00000597901 A8MXE2 369 aa13.59□□□□□ -0.23
LIG1-215ENST00000597901 SHISA8B8ZZ34 492 aa13.59□□□□□ -0.23
LIG1-215ENST00000597901 H3BML4 177 aa13.59□□□□□ -0.23
LIG1-215ENST00000597901 SOX30O94993 753 aa13.59□□□□□ -0.23
LIG1-215ENST00000597901 EPXP11678 715 aa13.59□□□□□ -0.23
LIG1-215ENST00000597901 CLDN20P56880 219 aa13.59□□□□□ -0.23
LIG1-215ENST00000597901 RIPPLY3P57055 190 aa13.59□□□□□ -0.23
LIG1-215ENST00000597901 C21orf58P58505 322 aa13.59□□□□□ -0.23
LIG1-215ENST00000597901 STX3Q13277 289 aa13.59□□□□□ -0.23
LIG1-215ENST00000597901 TESK1Q15569 626 aa13.59□□□□□ -0.23
LIG1-215ENST00000597901 PDCD2Q16342 344 aaPredicted RBP13.59□□□□□ -0.23
LIG1-215ENST00000597901 PGS1Q32NB8 556 aa13.59□□□□□ -0.23
LIG1-215ENST00000597901 SPDYE7PQ495Y7 208 aa13.59□□□□□ -0.23
LIG1-215ENST00000597901 CDC73Q6P1J9 531 aa13.59□□□□□ -0.23
LIG1-215ENST00000597901 CROCCP2Q86T23 111 aa13.59□□□□□ -0.23
LIG1-215ENST00000597901 LUZP2Q86TE4 346 aa13.59□□□□□ -0.23
LIG1-215ENST00000597901 GATSQ8NAP1 163 aa13.59□□□□□ -0.23
LIG1-215ENST00000597901 ADAMTS15Q8TE58 950 aa13.59□□□□□ -0.23
LIG1-215ENST00000597901 FIG4Q92562 907 aa13.59□□□□□ -0.23
LIG1-215ENST00000597901 NRGNQ92686 78 aa13.59□□□□□ -0.23
LIG1-215ENST00000597901 CDS1Q92903 461 aa13.59□□□□□ -0.23
LIG1-215ENST00000597901 CHMP6Q96FZ7 201 aa13.59□□□□□ -0.23
LIG1-215ENST00000597901 PGM2Q96G03 612 aa13.59□□□□□ -0.23
LIG1-215ENST00000597901 PPP1R36Q96LQ0 422 aa13.59□□□□□ -0.23
LIG1-215ENST00000597901 SORT1Q99523 831 aa13.59□□□□□ -0.23
LIG1-215ENST00000597901 RBM24Q9BX46 236 aaKnown RBP13.59□□□□□ -0.23
LIG1-215ENST00000597901 POLDIP3Q9BY77 421 aaKnown RBP13.59□□□□□ -0.23
LIG1-215ENST00000597901 ACTRT3Q9BYD9 372 aa13.59□□□□□ -0.23
LIG1-215ENST00000597901 PIGMQ9H3S5 423 aa13.59□□□□□ -0.23
LIG1-215ENST00000597901 GPATCH2Q9NW75 528 aa13.59□□□□□ -0.23
LIG1-215ENST00000597901 ASIC5Q9NY37 505 aa13.59□□□□□ -0.23
LIG1-215ENST00000597901 FAF1Q9UNN5 650 aaPredicted RBP13.59□□□□□ -0.23
LIG1-215ENST00000597901 ACTL7BQ9Y614 415 aa13.59□□□□□ -0.23
LIG1-215ENST00000597901 KCNE3Q9Y6H6 103 aa13.59□□□□□ -0.23
LIG1-215ENST00000597901 MED12Q93074 2177 aa13.58□□□□□ -0.24
LIG1-215ENST00000597901 A0A087WZY1 265 aa13.58□□□□□ -0.24
LIG1-215ENST00000597901 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.58□□□□□ -0.24
LIG1-215ENST00000597901 A0A1W2PNV4 684 aa13.58□□□□□ -0.24
LIG1-215ENST00000597901 SLC22A20A6NK97 555 aa13.58□□□□□ -0.24
LIG1-215ENST00000597901 A6NNC1 897 aa13.58□□□□□ -0.24
LIG1-215ENST00000597901 CFLARO15519 480 aa13.58□□□□□ -0.24
LIG1-215ENST00000597901 SEC14L5O43304 696 aa13.58□□□□□ -0.24
LIG1-215ENST00000597901 TNFSF13O75888 250 aa13.58□□□□□ -0.24
LIG1-215ENST00000597901 SNUPNO95149 360 aaKnown RBP13.58□□□□□ -0.24
LIG1-215ENST00000597901 CRHP06850 196 aa13.58□□□□□ -0.24
LIG1-215ENST00000597901 HPGDP15428 266 aa13.58□□□□□ -0.24
LIG1-215ENST00000597901 BGNP21810 368 aa13.58□□□□□ -0.24
LIG1-215ENST00000597901 DNAJA1P31689 397 aaKnown RBP13.58□□□□□ -0.24
LIG1-215ENST00000597901 HBA1P69905 142 aa13.58□□□□□ -0.24
LIG1-215ENST00000597901 SORDQ00796 357 aa13.58□□□□□ -0.24
LIG1-215ENST00000597901 TP53BP2Q13625 1128 aa13.58□□□□□ -0.24
LIG1-215ENST00000597901 OR2A2Q6IF42 318 aa13.58□□□□□ -0.24
LIG1-215ENST00000597901 CAMKMTQ7Z624 323 aa13.58□□□□□ -0.24
LIG1-215ENST00000597901 OR56A1Q8NGH5 318 aa13.58□□□□□ -0.24
LIG1-215ENST00000597901 ACTRT2Q8TDY3 377 aa13.58□□□□□ -0.24
LIG1-215ENST00000597901 STARD4Q96DR4 205 aa13.58□□□□□ -0.24
LIG1-215ENST00000597901 GPATCH1Q9BRR8 931 aaKnown RBP13.58□□□□□ -0.24
LIG1-215ENST00000597901 PINK1Q9BXM7 581 aa13.58□□□□□ -0.24
LIG1-215ENST00000597901 PNPOQ9NVS9 261 aa13.58□□□□□ -0.24
LIG1-215ENST00000597901 NOP53Q9NZM5 478 aaKnown RBP13.58□□□□□ -0.24
LIG1-215ENST00000597901 VDAC3Q9Y277 283 aa13.58□□□□□ -0.24
LIG1-215ENST00000597901 A0A1W2PQD3 144 aa13.57□□□□□ -0.24
LIG1-215ENST00000597901 SCDO00767 359 aa13.57□□□□□ -0.24
LIG1-215ENST00000597901 RPS3AP61247 264 aaKnown RBP13.57□□□□□ -0.24
LIG1-215ENST00000597901 OCRLQ01968 901 aa13.57□□□□□ -0.24
LIG1-215ENST00000597901 SGCBQ16585 318 aa13.57□□□□□ -0.24
LIG1-215ENST00000597901 KLHL26Q53HC5 615 aa13.57□□□□□ -0.24
LIG1-215ENST00000597901 OR4F3Q6IEY1 312 aa13.57□□□□□ -0.24
LIG1-215ENST00000597901 C6orf120Q7Z4R8 191 aa13.57□□□□□ -0.24
LIG1-215ENST00000597901 MISPQ8IVT2 679 aa13.57□□□□□ -0.24
LIG1-215ENST00000597901 GTPBP8Q8N3Z3 284 aaPredicted RBP13.57□□□□□ -0.24
LIG1-215ENST00000597901 SFXN5Q8TD22 340 aa13.57□□□□□ -0.24
LIG1-215ENST00000597901 SMPDL3BQ92485 455 aa13.57□□□□□ -0.24
LIG1-215ENST00000597901 MOAP1Q96BY2 351 aa13.57□□□□□ -0.24
LIG1-215ENST00000597901 SH3YL1Q96HL8 342 aaPredicted RBP13.57□□□□□ -0.24
LIG1-215ENST00000597901 ZNF845Q96IR2 970 aaPredicted RBP13.57□□□□□ -0.24
LIG1-215ENST00000597901 PAIP2Q9BPZ3 127 aaKnown RBP13.57□□□□□ -0.24
LIG1-215ENST00000597901 HOXD1Q9GZZ0 328 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms