RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 LRRC46Q96FV0 321 aa18.35■□□□□ 0.53
CLK3-225ENST00000569063 SH3GL2Q99962 352 aa18.35■□□□□ 0.53
CLK3-225ENST00000569063 PIGQQ9BRB3 760 aa18.35■□□□□ 0.53
CLK3-225ENST00000569063 DPY30Q9C005 99 aa18.35■□□□□ 0.53
CLK3-225ENST00000569063 THAP1Q9NVV9 213 aa18.35■□□□□ 0.53
CLK3-225ENST00000569063 FAF1Q9UNN5 650 aaPredicted RBP18.35■□□□□ 0.53
CLK3-225ENST00000569063 ZNF337Q9Y3M9 751 aa18.35■□□□□ 0.53
CLK3-225ENST00000569063 L3MBTL1Q9Y468 752 aa18.35■□□□□ 0.53
CLK3-225ENST00000569063 A0A1W2PQD3 144 aa18.34■□□□□ 0.53
CLK3-225ENST00000569063 RNASET2O00584 256 aaKnown RBP18.34■□□□□ 0.53
CLK3-225ENST00000569063 ANKRD28O15084 1053 aa18.34■□□□□ 0.53
CLK3-225ENST00000569063 HCRTR2O43614 444 aa18.34■□□□□ 0.53
CLK3-225ENST00000569063 SNNO75324 88 aaPredicted RBP18.34■□□□□ 0.53
CLK3-225ENST00000569063 TMIGD3P0DMS9 266 aaPredicted RBP18.34■□□□□ 0.53
CLK3-225ENST00000569063 CAPN3P20807 821 aa18.34■□□□□ 0.53
CLK3-225ENST00000569063 PEX19P40855 299 aa18.34■□□□□ 0.53
CLK3-225ENST00000569063 DGKQP52824 942 aa18.34■□□□□ 0.53
CLK3-225ENST00000569063 TMEM44Q2T9K0 475 aa18.34■□□□□ 0.53
CLK3-225ENST00000569063 CCNJQ5T5M9 372 aa18.34■□□□□ 0.53
CLK3-225ENST00000569063 OR4F3Q6IEY1 312 aa18.34■□□□□ 0.53
CLK3-225ENST00000569063 OGFOD2Q6N063 350 aa18.34■□□□□ 0.53
CLK3-225ENST00000569063 BHLHB9Q6PI77 547 aa18.34■□□□□ 0.53
CLK3-225ENST00000569063 LURAP1LQ8IV03 231 aa18.34■□□□□ 0.53
CLK3-225ENST00000569063 MISPQ8IVT2 679 aa18.34■□□□□ 0.53
CLK3-225ENST00000569063 ADAMTS15Q8TE58 950 aa18.34■□□□□ 0.53
CLK3-225ENST00000569063 RNASE6Q93091 150 aaKnown RBP18.34■□□□□ 0.53
CLK3-225ENST00000569063 CHMP6Q96FZ7 201 aa18.34■□□□□ 0.53
CLK3-225ENST00000569063 FOXD3Q9UJU5 478 aaPredicted RBP18.34■□□□□ 0.53
CLK3-225ENST00000569063 MED12Q93074 2177 aa18.33■□□□□ 0.52
CLK3-225ENST00000569063 OR2M5A3KFT3 312 aa18.33■□□□□ 0.52
CLK3-225ENST00000569063 ENO4A6NNW6 628 aa18.33■□□□□ 0.52
CLK3-225ENST00000569063 SCDO00767 359 aa18.33■□□□□ 0.52
CLK3-225ENST00000569063 HPGDP15428 266 aa18.33■□□□□ 0.52
CLK3-225ENST00000569063 POU3F2P20265 443 aaPredicted RBP18.33■□□□□ 0.52
CLK3-225ENST00000569063 KRTAP10-9P60411 292 aa18.33■□□□□ 0.52
CLK3-225ENST00000569063 CLECL1Q8IZS7 167 aa18.33■□□□□ 0.52
CLK3-225ENST00000569063 RAB3IL1Q8TBN0 382 aa18.33■□□□□ 0.52
CLK3-225ENST00000569063 TESCQ96BS2 214 aa18.33■□□□□ 0.52
CLK3-225ENST00000569063 ZNF559Q9BR84 538 aa18.33■□□□□ 0.52
CLK3-225ENST00000569063 HOXD1Q9GZZ0 328 aa18.33■□□□□ 0.52
CLK3-225ENST00000569063 ACBD3Q9H3P7 528 aa18.33■□□□□ 0.52
CLK3-225ENST00000569063 NKIRAS1Q9NYS0 192 aa18.33■□□□□ 0.52
CLK3-225ENST00000569063 JKAMPQ9P055 326 aa18.33■□□□□ 0.52
CLK3-225ENST00000569063 AP4B1Q9Y6B7 739 aa18.33■□□□□ 0.52
CLK3-225ENST00000569063 A0A087WZY1 265 aa18.32■□□□□ 0.52
CLK3-225ENST00000569063 SCN2BO60939 215 aa18.32■□□□□ 0.52
CLK3-225ENST00000569063 UQCRC1P31930 480 aa18.32■□□□□ 0.52
CLK3-225ENST00000569063 AGFG1P52594 562 aaKnown RBP18.32■□□□□ 0.52
CLK3-225ENST00000569063 CLDN15P56746 228 aa18.32■□□□□ 0.52
CLK3-225ENST00000569063 EEFSECP57772 596 aaKnown RBP18.32■□□□□ 0.52
CLK3-225ENST00000569063 EEF1A1P68104 462 aaKnown RBP18.32■□□□□ 0.52
CLK3-225ENST00000569063 FOXF2Q12947 444 aa18.32■□□□□ 0.52
CLK3-225ENST00000569063 DCST2Q5T1A1 773 aa18.32■□□□□ 0.52
CLK3-225ENST00000569063 EEF1A1P5Q5VTE0 462 aa18.32■□□□□ 0.52
CLK3-225ENST00000569063 ATG16L1Q676U5 607 aa18.32■□□□□ 0.52
CLK3-225ENST00000569063 CHMP1BQ7LBR1 199 aa18.32■□□□□ 0.52
CLK3-225ENST00000569063 MEIOBQ8N635 442 aa18.32■□□□□ 0.52
CLK3-225ENST00000569063 OR5M1Q8NGP8 315 aa18.32■□□□□ 0.52
CLK3-225ENST00000569063 OR5AK3PQ8NH89 298 aa18.32■□□□□ 0.52
CLK3-225ENST00000569063 MGARPQ8TDB4 240 aa18.32■□□□□ 0.52
CLK3-225ENST00000569063 ACTRT2Q8TDY3 377 aa18.32■□□□□ 0.52
CLK3-225ENST00000569063 SFXN3Q9BWM7 321 aa18.32■□□□□ 0.52
CLK3-225ENST00000569063 KCNE3Q9Y6H6 103 aa18.32■□□□□ 0.52
CLK3-225ENST00000569063 PDZD2O15018 2839 aa18.32■□□□□ 0.52
CLK3-225ENST00000569063 INTS1Q8N201 2190 aaKnown RBP18.31■□□□□ 0.52
CLK3-225ENST00000569063 CSMD2Q7Z408 3487 aa18.31■□□□□ 0.52
CLK3-225ENST00000569063 PRSS51A0A1B0GVH4 220 aa18.31■□□□□ 0.52
CLK3-225ENST00000569063 SDHDO14521 159 aa18.31■□□□□ 0.52
CLK3-225ENST00000569063 HDAC3O15379 428 aa18.31■□□□□ 0.52
CLK3-225ENST00000569063 GMFGO60234 142 aa18.31■□□□□ 0.52
CLK3-225ENST00000569063 TNFRSF21O75509 655 aa18.31■□□□□ 0.52
CLK3-225ENST00000569063 TGM6O95932 706 aa18.31■□□□□ 0.52
CLK3-225ENST00000569063 ZNF17P17021 662 aa18.31■□□□□ 0.52
CLK3-225ENST00000569063 ATP6V1C1P21283 382 aa18.31■□□□□ 0.52
CLK3-225ENST00000569063 SUCLG1P53597 346 aaKnown RBP18.31■□□□□ 0.52
CLK3-225ENST00000569063 CLNS1AP54105 237 aaKnown RBP18.31■□□□□ 0.52
CLK3-225ENST00000569063 OCRLQ01968 901 aa18.31■□□□□ 0.52
CLK3-225ENST00000569063 MYBPHQ13203 477 aa18.31■□□□□ 0.52
CLK3-225ENST00000569063 DPY19L1Q2PZI1 675 aa18.31■□□□□ 0.52
CLK3-225ENST00000569063 KLHL26Q53HC5 615 aa18.31■□□□□ 0.52
CLK3-225ENST00000569063 ANXA8L1Q5VT79 327 aa18.31■□□□□ 0.52
CLK3-225ENST00000569063 PLXDC2Q6UX71 529 aa18.31■□□□□ 0.52
CLK3-225ENST00000569063 C6orf120Q7Z4R8 191 aa18.31■□□□□ 0.52
CLK3-225ENST00000569063 MTERF4Q7Z6M4 381 aaKnown RBP18.31■□□□□ 0.52
CLK3-225ENST00000569063 GRAMD2AQ8IUY3 354 aa18.31■□□□□ 0.52
CLK3-225ENST00000569063 UBQLNLQ8IYU4 475 aa18.31■□□□□ 0.52
CLK3-225ENST00000569063 GATSQ8NAP1 163 aa18.31■□□□□ 0.52
CLK3-225ENST00000569063 VPS37AQ8NEZ2 397 aa18.31■□□□□ 0.52
CLK3-225ENST00000569063 OR7D2Q96RA2 312 aa18.31■□□□□ 0.52
CLK3-225ENST00000569063 MANSC1Q9H8J5 431 aa18.31■□□□□ 0.52
CLK3-225ENST00000569063 PCDHGB4Q9UN71 923 aa18.31■□□□□ 0.52
CLK3-225ENST00000569063 ABCA12Q86UK0 2595 aa18.31■□□□□ 0.52
CLK3-225ENST00000569063 PCNX3Q9H6A9 2034 aa18.3■□□□□ 0.52
CLK3-225ENST00000569063 C7orf72A4D263 438 aa18.3■□□□□ 0.52
CLK3-225ENST00000569063 DUXAA6NLW8 204 aa18.3■□□□□ 0.52
CLK3-225ENST00000569063 TRPC5OSA6NMA1 111 aa18.3■□□□□ 0.52
CLK3-225ENST00000569063 SLCO1B7G3V0H7 640 aa18.3■□□□□ 0.52
CLK3-225ENST00000569063 H3BML4 177 aa18.3■□□□□ 0.52
CLK3-225ENST00000569063 ALDOCP09972 364 aaKnown RBP18.3■□□□□ 0.52
CLK3-225ENST00000569063 SOAT1P35610 550 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms