RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 MOAP1Q96BY2 351 aa13.62□□□□□ -0.23
VPS39-210ENST00000568357 MAELQ96JY0 434 aaKnown RBP13.62□□□□□ -0.23
VPS39-210ENST00000568357 LURAP1Q96LR2 239 aa13.62□□□□□ -0.23
VPS39-210ENST00000568357 SFXN2Q96NB2 322 aa13.62□□□□□ -0.23
VPS39-210ENST00000568357 SERHL2Q9H4I8 314 aa13.62□□□□□ -0.23
VPS39-210ENST00000568357 VIPAS39Q9H9C1 493 aa13.62□□□□□ -0.23
VPS39-210ENST00000568357 KCNJ16Q9NPI9 418 aa13.62□□□□□ -0.23
VPS39-210ENST00000568357 UBQLN4Q9NRR5 601 aa13.62□□□□□ -0.23
VPS39-210ENST00000568357 NDUFB5O43674 189 aa13.61□□□□□ -0.23
VPS39-210ENST00000568357 GMFGO60234 142 aa13.61□□□□□ -0.23
VPS39-210ENST00000568357 C1QCP02747 245 aa13.61□□□□□ -0.23
VPS39-210ENST00000568357 HK1P19367 917 aa13.61□□□□□ -0.23
VPS39-210ENST00000568357 CHMP24386 653 aa13.61□□□□□ -0.23
VPS39-210ENST00000568357 LCN1P31025 176 aa13.61□□□□□ -0.23
VPS39-210ENST00000568357 CEACAM8P31997 349 aaPredicted RBP13.61□□□□□ -0.23
VPS39-210ENST00000568357 S100A3P33764 101 aa13.61□□□□□ -0.23
VPS39-210ENST00000568357 GCKP35557 465 aa13.61□□□□□ -0.23
VPS39-210ENST00000568357 SOAT1P35610 550 aa13.61□□□□□ -0.23
VPS39-210ENST00000568357 DGKQP52824 942 aa13.61□□□□□ -0.23
VPS39-210ENST00000568357 CLNS1AP54105 237 aaKnown RBP13.61□□□□□ -0.23
VPS39-210ENST00000568357 CASP9P55211 416 aa13.61□□□□□ -0.23
VPS39-210ENST00000568357 CLDN18P56856 261 aa13.61□□□□□ -0.23
VPS39-210ENST00000568357 NSUN5P2Q63ZY6 315 aa13.61□□□□□ -0.23
VPS39-210ENST00000568357 NXNQ6DKJ4 435 aa13.61□□□□□ -0.23
VPS39-210ENST00000568357 AAGABQ6PD74 315 aa13.61□□□□□ -0.23
VPS39-210ENST00000568357 ENPP6Q6UWR7 440 aa13.61□□□□□ -0.23
VPS39-210ENST00000568357 GATSQ8NAP1 163 aa13.61□□□□□ -0.23
VPS39-210ENST00000568357 ACBD4Q8NC06 268 aa13.61□□□□□ -0.23
VPS39-210ENST00000568357 OR5M1Q8NGP8 315 aa13.61□□□□□ -0.23
VPS39-210ENST00000568357 ACTRT2Q8TDY3 377 aa13.61□□□□□ -0.23
VPS39-210ENST00000568357 C1GALT1C1Q96EU7 318 aa13.61□□□□□ -0.23
VPS39-210ENST00000568357 OR7D2Q96RA2 312 aa13.61□□□□□ -0.23
VPS39-210ENST00000568357 OR52B2Q96RD2 323 aa13.61□□□□□ -0.23
VPS39-210ENST00000568357 TRIB1Q96RU8 372 aa13.61□□□□□ -0.23
VPS39-210ENST00000568357 TUBA1CQ9BQE3 449 aa13.61□□□□□ -0.23
VPS39-210ENST00000568357 G6PC3Q9BUM1 346 aa13.61□□□□□ -0.23
VPS39-210ENST00000568357 ENKD1Q9H0I2 346 aa13.61□□□□□ -0.23
VPS39-210ENST00000568357 PTGES2Q9H7Z7 377 aa13.61□□□□□ -0.23
VPS39-210ENST00000568357 NPDC1Q9NQX5 325 aaPredicted RBP13.61□□□□□ -0.23
VPS39-210ENST00000568357 ARGLU1Q9NWB6 273 aaPredicted RBP13.61□□□□□ -0.23
VPS39-210ENST00000568357 PCDHGB4Q9UN71 923 aa13.61□□□□□ -0.23
VPS39-210ENST00000568357 NPIPA5A0A0B4J1W7 369 aa13.6□□□□□ -0.23
VPS39-210ENST00000568357 CD8B2A6NJW9 211 aa13.6□□□□□ -0.23
VPS39-210ENST00000568357 E9PBE3 544 aa13.6□□□□□ -0.23
VPS39-210ENST00000568357 NPIPA7E9PJI5 369 aa13.6□□□□□ -0.23
VPS39-210ENST00000568357 SASH3O75995 380 aa13.6□□□□□ -0.23
VPS39-210ENST00000568357 KRT16P08779 473 aa13.6□□□□□ -0.23
VPS39-210ENST00000568357 NPIPA8P0DM63 369 aa13.6□□□□□ -0.23
VPS39-210ENST00000568357 COX6B1P14854 86 aa13.6□□□□□ -0.23
VPS39-210ENST00000568357 ZNF708P17019 499 aa13.6□□□□□ -0.23
VPS39-210ENST00000568357 MATN1P21941 496 aa13.6□□□□□ -0.23
VPS39-210ENST00000568357 TIMP3P35625 211 aa13.6□□□□□ -0.23
VPS39-210ENST00000568357 SF3B4Q15427 424 aaKnown RBP eCLIP13.6□□□□□ -0.235e-6■■■□□ 16.4
VPS39-210ENST00000568357 CD226Q15762 336 aa13.6□□□□□ -0.23
VPS39-210ENST00000568357 DCST2Q5T1A1 773 aa13.6□□□□□ -0.23
VPS39-210ENST00000568357 BHLHB9Q6PI77 547 aa13.6□□□□□ -0.23
VPS39-210ENST00000568357 POMZP3Q6PJE2 187 aa13.6□□□□□ -0.23
VPS39-210ENST00000568357 ARSKQ6UWY0 536 aa13.6□□□□□ -0.23
VPS39-210ENST00000568357 PLXDC2Q6UX71 529 aa13.6□□□□□ -0.23
VPS39-210ENST00000568357 LACC1Q8IV20 430 aa13.6□□□□□ -0.23
VPS39-210ENST00000568357 VPS37AQ8NEZ2 397 aa13.6□□□□□ -0.23
VPS39-210ENST00000568357 DTNBP1Q96EV8 351 aa13.6□□□□□ -0.23
VPS39-210ENST00000568357 MARK4Q96L34 752 aa13.6□□□□□ -0.23
VPS39-210ENST00000568357 SPOCK3Q9BQ16 436 aa13.6□□□□□ -0.23
VPS39-210ENST00000568357 KLHDC3Q9BQ90 382 aa13.6□□□□□ -0.23
VPS39-210ENST00000568357 CALHM2Q9HA72 323 aa13.6□□□□□ -0.23
VPS39-210ENST00000568357 SLCO1B3Q9NPD5 702 aa13.6□□□□□ -0.23
VPS39-210ENST00000568357 ZNF337Q9Y3M9 751 aa13.6□□□□□ -0.23
VPS39-210ENST00000568357 USH1CQ9Y6N9 552 aa13.6□□□□□ -0.23
VPS39-210ENST00000568357 RNF103-CHMP3A0A140T963 221 aa13.59□□□□□ -0.23
VPS39-210ENST00000568357 HSPB2A8KAH6 182 aa13.59□□□□□ -0.23
VPS39-210ENST00000568357 HMGB1P1B2RPK0 211 aaPredicted RBP13.59□□□□□ -0.23
VPS39-210ENST00000568357 SHISA8B8ZZ34 492 aa13.59□□□□□ -0.23
VPS39-210ENST00000568357 FAM47E-STBD1D6RA91 191 aa13.59□□□□□ -0.23
VPS39-210ENST00000568357 H0Y3Z8 333 aa13.59□□□□□ -0.23
VPS39-210ENST00000568357 SOX30O94993 753 aa13.59□□□□□ -0.23
VPS39-210ENST00000568357 FREM3P0C091 2139 aa13.59□□□□□ -0.23
VPS39-210ENST00000568357 HPGDP15428 266 aa13.59□□□□□ -0.23
VPS39-210ENST00000568357 UQCRC2P22695 453 aa13.59□□□□□ -0.23
VPS39-210ENST00000568357 RNF144AP50876 292 aaPredicted RBP13.59□□□□□ -0.23
VPS39-210ENST00000568357 CLDN15P56746 228 aa13.59□□□□□ -0.23
VPS39-210ENST00000568357 GANABQ14697 944 aaKnown RBP13.59□□□□□ -0.23
VPS39-210ENST00000568357 HSPB2Q16082 182 aa13.59□□□□□ -0.23
VPS39-210ENST00000568357 DPY19L1Q2PZI1 675 aa13.59□□□□□ -0.23
VPS39-210ENST00000568357 TMEM44Q2T9K0 475 aa13.59□□□□□ -0.23
VPS39-210ENST00000568357 KLHL26Q53HC5 615 aa13.59□□□□□ -0.23
VPS39-210ENST00000568357 RAET1LQ5VY80 246 aa13.59□□□□□ -0.23
VPS39-210ENST00000568357 EPGNQ6UW88 154 aa13.59□□□□□ -0.23
VPS39-210ENST00000568357 ADGRE4PQ86SQ3 457 aa13.59□□□□□ -0.23
VPS39-210ENST00000568357 ZNF295-AS1Q8N0V1 137 aa13.59□□□□□ -0.23
VPS39-210ENST00000568357 GOT1L1Q8NHS2 421 aaPredicted RBP13.59□□□□□ -0.23
VPS39-210ENST00000568357 C7orf26Q96N11 449 aa13.59□□□□□ -0.23
VPS39-210ENST00000568357 CCDC115Q96NT0 180 aa13.59□□□□□ -0.23
VPS39-210ENST00000568357 OR52E6Q96RD3 313 aa13.59□□□□□ -0.23
VPS39-210ENST00000568357 SDF2Q99470 211 aa13.59□□□□□ -0.23
VPS39-210ENST00000568357 INPP5KQ9BT40 448 aa13.59□□□□□ -0.23
VPS39-210ENST00000568357 BTNL2Q9UIR0 455 aa13.59□□□□□ -0.23
VPS39-210ENST00000568357 A0A1W2PQD3 144 aa13.58□□□□□ -0.24
VPS39-210ENST00000568357 OR2M5A3KFT3 312 aa13.58□□□□□ -0.24
VPS39-210ENST00000568357 MBD3L4A6NDZ8 208 aaPredicted RBP13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms