RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 LCN1P31025 176 aa18.72■□□□□ 0.59
CLN3-219ENST00000565778 CPA2P48052 419 aa18.72■□□□□ 0.59
CLN3-219ENST00000565778 SLC1A6P48664 564 aa18.72■□□□□ 0.59
CLN3-219ENST00000565778 SUCLG1P53597 346 aaKnown RBP18.72■□□□□ 0.59
CLN3-219ENST00000565778 CCNJQ5T5M9 372 aa18.72■□□□□ 0.59
CLN3-219ENST00000565778 ZAR1Q86SH2 424 aa18.72■□□□□ 0.59
CLN3-219ENST00000565778 ZNF781Q8N8C0 355 aa18.72■□□□□ 0.59
CLN3-219ENST00000565778 LINC01560Q8TB33 94 aa18.72■□□□□ 0.59
CLN3-219ENST00000565778 SMPDL3BQ92485 455 aa18.72■□□□□ 0.59
CLN3-219ENST00000565778 PAIP2Q9BPZ3 127 aaKnown RBP18.72■□□□□ 0.59
CLN3-219ENST00000565778 GPATCH1Q9BRR8 931 aaKnown RBP18.72■□□□□ 0.59
CLN3-219ENST00000565778 BTBD2Q9BX70 525 aa18.72■□□□□ 0.59
CLN3-219ENST00000565778 PIGUQ9H490 435 aa18.72■□□□□ 0.59
CLN3-219ENST00000565778 NOP53Q9NZM5 478 aaKnown RBP18.72■□□□□ 0.59
CLN3-219ENST00000565778 FAF1Q9UNN5 650 aaPredicted RBP18.72■□□□□ 0.59
CLN3-219ENST00000565778 VDAC3Q9Y277 283 aa18.72■□□□□ 0.59
CLN3-219ENST00000565778 EPB41L3Q9Y2J2 1087 aaPredicted RBP18.72■□□□□ 0.59
CLN3-219ENST00000565778 RAP2CQ9Y3L5 183 aa18.72■□□□□ 0.59
CLN3-219ENST00000565778 IGLV3-32A0A0A0MS00 114 aa18.71■□□□□ 0.59
CLN3-219ENST00000565778 SLC22A20A6NK97 555 aa18.71■□□□□ 0.59
CLN3-219ENST00000565778 H0YC42 278 aa18.71■□□□□ 0.59
CLN3-219ENST00000565778 SCDO00767 359 aa18.71■□□□□ 0.59
CLN3-219ENST00000565778 HCRTR2O43614 444 aa18.71■□□□□ 0.59
CLN3-219ENST00000565778 TNFRSF21O75509 655 aa18.71■□□□□ 0.59
CLN3-219ENST00000565778 NGFRP08138 427 aa18.71■□□□□ 0.59
CLN3-219ENST00000565778 TPD52P55327 224 aaPredicted RBP18.71■□□□□ 0.59
CLN3-219ENST00000565778 CLDN15P56746 228 aa18.71■□□□□ 0.59
CLN3-219ENST00000565778 CLDN8P56748 225 aa18.71■□□□□ 0.59
CLN3-219ENST00000565778 TP53BP2Q13625 1128 aa18.71■□□□□ 0.59
CLN3-219ENST00000565778 OR2A2Q6IF42 318 aa18.71■□□□□ 0.59
CLN3-219ENST00000565778 CROCCP2Q86T23 111 aa18.71■□□□□ 0.59
CLN3-219ENST00000565778 RIMKLAQ8IXN7 391 aa18.71■□□□□ 0.59
CLN3-219ENST00000565778 ADAMTS15Q8TE58 950 aa18.71■□□□□ 0.59
CLN3-219ENST00000565778 CDS1Q92903 461 aa18.71■□□□□ 0.59
CLN3-219ENST00000565778 STACQ99469 402 aa18.71■□□□□ 0.59
CLN3-219ENST00000565778 DUSP26Q9BV47 211 aa18.71■□□□□ 0.59
CLN3-219ENST00000565778 PINK1Q9BXM7 581 aa18.71■□□□□ 0.59
CLN3-219ENST00000565778 ACTRT3Q9BYD9 372 aa18.71■□□□□ 0.59
CLN3-219ENST00000565778 BHLHE41Q9C0J9 482 aaPredicted RBP18.71■□□□□ 0.59
CLN3-219ENST00000565778 C20orf27Q9GZN8 174 aa18.71■□□□□ 0.59
CLN3-219ENST00000565778 PIGMQ9H3S5 423 aa18.71■□□□□ 0.59
CLN3-219ENST00000565778 CXorf36Q9H7Y0 433 aa18.71■□□□□ 0.59
CLN3-219ENST00000565778 AKTIPQ9H8T0 292 aa18.71■□□□□ 0.59
CLN3-219ENST00000565778 DUSP22Q9NRW4 184 aa18.71■□□□□ 0.59
CLN3-219ENST00000565778 STOML1Q9UBI4 398 aa18.71■□□□□ 0.59
CLN3-219ENST00000565778 OTOGQ6ZRI0 2925 aa18.71■□□□□ 0.59
CLN3-219ENST00000565778 SHISA8B8ZZ34 492 aa18.7■□□□□ 0.58
CLN3-219ENST00000565778 EPXP11678 715 aa18.7■□□□□ 0.58
CLN3-219ENST00000565778 ATP6V1C1P21283 382 aa18.7■□□□□ 0.58
CLN3-219ENST00000565778 RPL14P50914 215 aaKnown RBP18.7■□□□□ 0.58
CLN3-219ENST00000565778 CLDN20P56880 219 aa18.7■□□□□ 0.58
CLN3-219ENST00000565778 RPS3AP61247 264 aaKnown RBP18.7■□□□□ 0.58
CLN3-219ENST00000565778 STX3Q13277 289 aa18.7■□□□□ 0.58
CLN3-219ENST00000565778 MPP2Q14168 576 aa18.7■□□□□ 0.58
CLN3-219ENST00000565778 SGCBQ16585 318 aa18.7■□□□□ 0.58
CLN3-219ENST00000565778 SMU1Q2TAY7 513 aa18.7■□□□□ 0.58
CLN3-219ENST00000565778 FBXW10Q5XX13 1052 aa18.7■□□□□ 0.58
CLN3-219ENST00000565778 CDC73Q6P1J9 531 aa18.7■□□□□ 0.58
CLN3-219ENST00000565778 OR56A1Q8NGH5 318 aa18.7■□□□□ 0.58
CLN3-219ENST00000565778 NRGNQ92686 78 aa18.7■□□□□ 0.58
CLN3-219ENST00000565778 RASSF1Q9NS23 344 aa18.7■□□□□ 0.58
CLN3-219ENST00000565778 GIN1Q9NXP7 522 aa18.7■□□□□ 0.58
CLN3-219ENST00000565778 AP4B1Q9Y6B7 739 aa18.7■□□□□ 0.58
CLN3-219ENST00000565778 POLQO75417 2590 aa18.69■□□□□ 0.58
CLN3-219ENST00000565778 A0A1W2PNV4 684 aa18.69■□□□□ 0.58
CLN3-219ENST00000565778 A6NNC1 897 aa18.69■□□□□ 0.58
CLN3-219ENST00000565778 SOX30O94993 753 aa18.69■□□□□ 0.58
CLN3-219ENST00000565778 SNUPNO95149 360 aaKnown RBP18.69■□□□□ 0.58
CLN3-219ENST00000565778 KRT16P08779 473 aa18.69■□□□□ 0.58
CLN3-219ENST00000565778 DHRS4L1P0CG22 281 aa18.69■□□□□ 0.58
CLN3-219ENST00000565778 BGNP21810 368 aa18.69■□□□□ 0.58
CLN3-219ENST00000565778 SORDQ00796 357 aa18.69■□□□□ 0.58
CLN3-219ENST00000565778 DAZAP2Q15038 168 aaPredicted RBP18.69■□□□□ 0.58
CLN3-219ENST00000565778 EXOSC6Q5RKV6 272 aaKnown RBP18.69■□□□□ 0.58
CLN3-219ENST00000565778 MISPQ8IVT2 679 aa18.69■□□□□ 0.58
CLN3-219ENST00000565778 CNEP1R1Q8N9A8 125 aa18.69■□□□□ 0.58
CLN3-219ENST00000565778 PSMA8Q8TAA3 256 aa18.69■□□□□ 0.58
CLN3-219ENST00000565778 FIG4Q92562 907 aa18.69■□□□□ 0.58
CLN3-219ENST00000565778 SH3YL1Q96HL8 342 aaPredicted RBP18.69■□□□□ 0.58
CLN3-219ENST00000565778 CLEC4MQ9H2X3 399 aaPredicted RBP18.69■□□□□ 0.58
CLN3-219ENST00000565778 ACTL7BQ9Y614 415 aa18.69■□□□□ 0.58
CLN3-219ENST00000565778 A0A087WZY1 265 aa18.68■□□□□ 0.58
CLN3-219ENST00000565778 A8MXE2 369 aa18.68■□□□□ 0.58
CLN3-219ENST00000565778 SMNDC1O75940 238 aaKnown RBP eCLIP18.68■□□□□ 0.58
CLN3-219ENST00000565778 CRHP06850 196 aa18.68■□□□□ 0.58
CLN3-219ENST00000565778 DNAJA1P31689 397 aaKnown RBP18.68■□□□□ 0.58
CLN3-219ENST00000565778 SOAT1P35610 550 aa18.68■□□□□ 0.58
CLN3-219ENST00000565778 ZNF41P51814 821 aaPredicted RBP18.68■□□□□ 0.58
CLN3-219ENST00000565778 TNFAIP8L3Q5GJ75 292 aa18.68■□□□□ 0.58
CLN3-219ENST00000565778 HHATQ5VTY9 493 aa18.68■□□□□ 0.58
CLN3-219ENST00000565778 BHLHB9Q6PI77 547 aa18.68■□□□□ 0.58
CLN3-219ENST00000565778 OR5AK3PQ8NH89 298 aa18.68■□□□□ 0.58
CLN3-219ENST00000565778 MOAP1Q96BY2 351 aa18.68■□□□□ 0.58
CLN3-219ENST00000565778 PGM2Q96G03 612 aa18.68■□□□□ 0.58
CLN3-219ENST00000565778 HOXD1Q9GZZ0 328 aa18.68■□□□□ 0.58
CLN3-219ENST00000565778 NEUROD4Q9HD90 331 aa18.68■□□□□ 0.58
CLN3-219ENST00000565778 GALNT8Q9NY28 637 aa18.68■□□□□ 0.58
CLN3-219ENST00000565778 ASIC5Q9NY37 505 aa18.68■□□□□ 0.58
CLN3-219ENST00000565778 PACSIN3Q9UKS6 424 aa18.68■□□□□ 0.58
CLN3-219ENST00000565778 PCDHGB4Q9UN71 923 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms