RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	CCDC7	Q96M83	1385 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	PTPRU	Q92729	1446 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	GLI2	P10070	1586 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440		A0A0A6YYH2	397 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	KBTBD11-OT1	A0A1B0GTJ5	212 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440		A0A1B0GUA9	196 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	SMCO2	A6NFE2	343 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440		A6NJ64	397 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	GOLGA8J	A6NMD2	632 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440		E7ESA3	106 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	PRAMEF26	H0Y7S4	382 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	CYB561D2	O14569	222 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	STK17B	O94768	372 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	CLDN9	O95484	217 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	RPN2	P04844	631 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	OCM	P0CE72	109 aa	Predicted RBP	3.77	□□□□□ -1.81
USP44-208	ENST00000552440	TRIM49	P0CI25	452 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	TRIM49C	P0CI26	452 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	ZNF26	P17031	533 aa	Predicted RBP	3.77	□□□□□ -1.81
USP44-208	ENST00000552440	PIGA	P37287	484 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	AVPR1A	P37288	418 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	SLC1A4	P43007	532 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	HTR5A	P47898	357 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	PCYT1A	P49585	367 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	VAMP7	P51809	220 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	HMGCS2	P54868	508 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	CLDN20	P56880	219 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	RWDD2B	P57060	319 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	TAS2R38	P59533	333 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	RAB14	P61106	215 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	ADARB1	P78563	741 aa	Known RBP	3.77	□□□□□ -1.81
USP44-208	ENST00000552440	LCN2	P80188	198 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	IFFO1	Q0D2I5	559 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	MADCAM1	Q13477	382 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	UAP1	Q16222	522 aa	Predicted RBP	3.77	□□□□□ -1.81
USP44-208	ENST00000552440	GPR33	Q49SQ1	333 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	KLHL22	Q53GT1	634 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	RAB6C	Q53S08	254 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	MANEA	Q5SRI9	462 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	PAPD7	Q5XG87	772 aa	Known RBP	3.77	□□□□□ -1.81
USP44-208	ENST00000552440	ULK3	Q6PHR2	472 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	DEF8	Q6ZN54	512 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	ZNF367	Q7RTV3	350 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	GPBP1	Q86WP2	473 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	SFR1	Q86XK3	245 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	CLEC4F	Q8N1N0	589 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	C1orf52	Q8N6N3	182 aa	Known RBP	3.77	□□□□□ -1.81
USP44-208	ENST00000552440	HORMAD2	Q8N7B1	307 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	POC1A	Q8NBT0	407 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	HMGCLL1	Q8TB92	370 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	ARRDC2	Q8TBH0	407 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	NAT6	Q93015	286 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	C8orf44	Q96CB5	159 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	ZNF419	Q96HQ0	510 aa	Predicted RBP	3.77	□□□□□ -1.81
USP44-208	ENST00000552440	SLC30A2	Q9BRI3	323 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	TM2D2	Q9BX73	214 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	RAB6C	Q9H0N0	254 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	SDCBP2	Q9H190	292 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	UGT1A10	Q9HAW8	530 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	RAVER2	Q9HCJ3	691 aa	Known RBP	3.77	□□□□□ -1.81
USP44-208	ENST00000552440	POLD4	Q9HCU8	107 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	CD209	Q9NNX6	404 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	OR2S2	Q9NQN1	319 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	CLN8	Q9UBY8	286 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	PRPF19	Q9UMS4	504 aa	Known RBP	3.77	□□□□□ -1.81
USP44-208	ENST00000552440	SAMHD1	Q9Y3Z3	626 aa	Known RBP	3.77	□□□□□ -1.81
USP44-208	ENST00000552440	TIMM10B	Q9Y5J6	103 aa		3.77	□□□□□ -1.81
USP44-208	ENST00000552440	SPIN1	Q9Y657	262 aa	Predicted RBP	3.77	□□□□□ -1.81
USP44-208	ENST00000552440	PRDM2	Q13029	1718 aa		3.76	□□□□□ -1.81
USP44-208	ENST00000552440	ATP10A	O60312	1499 aa		3.76	□□□□□ -1.81
USP44-208	ENST00000552440	KCNE1B	A0A087WTH5	132 aa		3.76	□□□□□ -1.81
USP44-208	ENST00000552440		A0A0G2JLW4	131 aa		3.76	□□□□□ -1.81
USP44-208	ENST00000552440	FABP12	A6NFH5	140 aa		3.76	□□□□□ -1.81
USP44-208	ENST00000552440	YJEFN3	A6XGL0	299 aa		3.76	□□□□□ -1.81
USP44-208	ENST00000552440	RNASEK-C17orf49	H0YIS7	233 aa		3.76	□□□□□ -1.81
USP44-208	ENST00000552440	TULP2	O00295	520 aa		3.76	□□□□□ -1.81
USP44-208	ENST00000552440	KRT7	P08729	469 aa		3.76	□□□□□ -1.81
USP44-208	ENST00000552440	ARSB	P15848	533 aa		3.76	□□□□□ -1.81
USP44-208	ENST00000552440	TBXA2R	P21731	343 aa		3.76	□□□□□ -1.81
USP44-208	ENST00000552440	BDKRB2	P30411	391 aa		3.76	□□□□□ -1.81
USP44-208	ENST00000552440	HMGCL	P35914	325 aa		3.76	□□□□□ -1.81
USP44-208	ENST00000552440	MNDA	P41218	407 aa		3.76	□□□□□ -1.81
USP44-208	ENST00000552440	CSNK1D	P48730	415 aa		3.76	□□□□□ -1.81
USP44-208	ENST00000552440	EFNB2	P52799	333 aa		3.76	□□□□□ -1.81
USP44-208	ENST00000552440	HSPA2	P54652	639 aa		3.76	□□□□□ -1.81
USP44-208	ENST00000552440	ERVK-25	P63136	954 aa		3.76	□□□□□ -1.81
USP44-208	ENST00000552440	HOXA4	Q00056	320 aa	Predicted RBP	3.76	□□□□□ -1.81
USP44-208	ENST00000552440	PTPN20	Q4JDL3	420 aa		3.76	□□□□□ -1.81
USP44-208	ENST00000552440	DLK2	Q6UY11	383 aa		3.76	□□□□□ -1.81
USP44-208	ENST00000552440	DPY19L2P2	Q6ZN68	376 aa		3.76	□□□□□ -1.81
USP44-208	ENST00000552440	P4HA3	Q7Z4N8	544 aa		3.76	□□□□□ -1.81
USP44-208	ENST00000552440	GLCCI1	Q86VQ1	547 aa		3.76	□□□□□ -1.81
USP44-208	ENST00000552440	CACUL1	Q86Y37	369 aa		3.76	□□□□□ -1.81
USP44-208	ENST00000552440	ITPRIP	Q8IWB1	547 aa		3.76	□□□□□ -1.81
USP44-208	ENST00000552440	MAP7D3	Q8IWC1	876 aa		3.76	□□□□□ -1.81
USP44-208	ENST00000552440	LGI2	Q8N0V4	545 aa		3.76	□□□□□ -1.81
USP44-208	ENST00000552440	PRSS35	Q8N3Z0	413 aa		3.76	□□□□□ -1.81
USP44-208	ENST00000552440	CCDC185	Q8N715	623 aa		3.76	□□□□□ -1.81
USP44-208	ENST00000552440		Q8N9G6	341 aa	Predicted RBP	3.76	□□□□□ -1.81
USP44-208	ENST00000552440	C8orf31	Q8N9H6	132 aa		3.76	□□□□□ -1.81

Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms