RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 USF2Q15853 346 aaPredicted RBP10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ATG9BQ674R7 924 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 FAM198BQ6UWH4 519 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 CEP68Q76N32 757 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 Q7L0L9 218 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SHFQ7M4L6 423 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SLC5A8Q8N695 610 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ZNF548Q8NEK5 533 aaPredicted RBP10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 GGHQ92820 318 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 MMABQ96EY8 250 aaPredicted RBP10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 PEX11GQ96HA9 241 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 TEFMQ96QE5 360 aaKnown RBP10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 GSX2Q9BZM3 304 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ZNF436Q9C0F3 470 aaPredicted RBP10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 WASH6PQ9NQA3 447 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 NLGN3Q9NZ94 848 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 NDUFAF4Q9P032 175 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 B4DXG7 233 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 KRBOX1C9JBD0 128 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SGK494L7N484 410 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 KHNYNO15037 678 aaKnown RBP10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 DRD3P35462 400 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 MASP1P48740 699 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 MAP4K2Q12851 820 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ZXDCQ2QGD7 858 aaPredicted RBP10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ZNF311Q5JNZ3 666 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 EOGTQ5NDL2 527 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 PIP5KL1Q5T9C9 394 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ELP2Q6IA86 826 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 C3P1Q6ZMU1 363 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 FBXL6Q8N531 539 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 TCEANCQ8N8B7 351 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ACOT4Q8N9L9 421 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 DNAJB8Q8NHS0 232 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 MBOAT4Q96T53 435 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 BIN3Q9NQY0 253 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 DCAF13Q9NV06 445 aaKnown RBP10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 AKAP7Q9P0M2 348 aaPredicted RBP10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ZNF69Q9UC07 566 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 GPR52Q9Y2T5 361 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 TLX2O43763 284 aaPredicted RBP10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 PRMT3O60678 531 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 HMGN2P05204 90 aaKnown RBP10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 DCNP07585 359 aaKnown RBP10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 COL9A1P20849 921 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ZNF10P21506 573 aaPredicted RBP10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 HNRNPA2B1P22626 353 aaKnown RBP10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 EPHA2P29317 976 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 TRIM23P36406 574 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 RPL4P36578 427 aaKnown RBP10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 PSMA6P60900 246 aaKnown RBP10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 PRR5P85299 388 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 MAT1AQ00266 395 aaKnown RBP10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 CRB2Q5IJ48 1285 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 AGBL4Q5VU57 503 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 KIAA1161Q6NSJ0 714 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 RTL4Q6ZR62 310 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 PRSS42Q7Z5A4 293 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 RBM45Q8IUH3 476 aaKnown RBP10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 GPR135Q8IZ08 494 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 OR5T3Q8NGG3 340 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 OR8D2Q9GZM6 311 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 OR51J1Q9H342 316 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 GMEB2Q9UKD1 530 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 EYSQ5T1H1 3165 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 MN1Q10571 1320 aaPredicted RBP10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 A0A0A6YYC8 382 aaPredicted RBP10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 I3L1I5 382 aaPredicted RBP10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 PLPP1O14494 284 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 TOR1AO14656 332 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 HYAL3O43820 417 aaPredicted RBP10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SCN2BO60939 215 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 HRGP04196 525 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 RETP07949 1114 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 HOXA9P31269 272 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 CBX5P45973 191 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 TEAD4Q15561 434 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 RPE65Q16518 533 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 NKG7Q16617 165 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 OR4C11Q6IEV9 310 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 C17orf107Q6ZR85 190 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 TMEM17Q86X19 198 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 B3GNT7Q8NFL0 401 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 BEST4Q8NFU0 473 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 LILRB1Q8NHL6 650 aaPredicted RBP10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 GATAD2BQ8WXI9 593 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 MRGPRX1Q96LB2 322 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 HSPA12BQ96MM6 686 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 MAPKAP1Q9BPZ7 522 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 GORASP2Q9H8Y8 452 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 TREM1Q9NP99 234 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SLC23A1Q9UHI7 598 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 MUTYHQ9UIF7 546 aa10.09□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 URADA6NGE7 173 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 CHST10O43529 356 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 OR5F1O95221 314 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 DRD5P21918 477 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 IGFALSP35858 605 aa10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 PSMD4P55036 377 aaKnown RBP10.08□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 EXOSC7Q15024 291 aaKnown RBP10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms