RNA–Protein interactions for RNA: YDL164C

CDC9, Transcript of DNA ligase found in the nucleus and mitochondria, yeast

Gene CDC9, Length 2,268 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC9	YDL164C	CAJ1	P39101	391 aa		4.89	□□□□□ -1.63
CDC9	YDL164C	LTP1	P40347	161 aa		4.89	□□□□□ -1.63
CDC9	YDL164C	BFA1	P47113	574 aa		4.89	□□□□□ -1.63
CDC9	YDL164C	CPR6	P53691	371 aa	Known RBP	4.89	□□□□□ -1.63
CDC9	YDL164C	CUS1	Q02554	436 aa	Predicted RBP	4.89	□□□□□ -1.63
CDC9	YDL164C	SYH1	Q02875	849 aa	Known RBP	4.89	□□□□□ -1.63
CDC9	YDL164C	VTI1	Q04338	217 aa		4.89	□□□□□ -1.63
CDC9	YDL164C	OPY2	Q06810	360 aa		4.89	□□□□□ -1.63
CDC9	YDL164C	GUD1	Q07729	489 aa		4.89	□□□□□ -1.63
CDC9	YDL164C	RMP1	Q12530	201 aa		4.89	□□□□□ -1.63
CDC9	YDL164C	TFA2	P36145	328 aa		4.89	□□□□□ -1.63
CDC9	YDL164C	NOP16	P40007	231 aa	Known RBP	4.89	□□□□□ -1.63
CDC9	YDL164C	RIC1	P40395	1056 aa		4.89	□□□□□ -1.63
CDC9	YDL164C	IMA5	P40884	581 aa		4.89	□□□□□ -1.63
CDC9	YDL164C	JJJ2	P46997	583 aa		4.89	□□□□□ -1.63
CDC9	YDL164C	SPO71	Q03868	1245 aa		4.89	□□□□□ -1.63
CDC9	YDL164C	PAH1	P32567	862 aa		4.88	□□□□□ -1.63
CDC9	YDL164C	DOM34	P33309	386 aa		4.88	□□□□□ -1.63
CDC9	YDL164C	PSY4	P38193	441 aa		4.88	□□□□□ -1.63
CDC9	YDL164C	TOK1	P40310	691 aa		4.88	□□□□□ -1.63
CDC9	YDL164C	CNN1	P43618	361 aa		4.88	□□□□□ -1.63
CDC9	YDL164C	SKP1	P52286	194 aa		4.88	□□□□□ -1.63
CDC9	YDL164C	HOT1	Q03213	719 aa		4.88	□□□□□ -1.63
CDC9	YDL164C	HLR1	Q04429	423 aa		4.88	□□□□□ -1.63
CDC9	YDL164C	UTP21	Q06078	939 aa	Predicted RBP	4.88	□□□□□ -1.63
CDC9	YDL164C	SGD1	Q06132	899 aa		4.88	□□□□□ -1.63
CDC9	YDL164C	SCM3	Q12334	223 aa		4.88	□□□□□ -1.63
CDC9	YDL164C	RVB2	Q12464	471 aa	Known RBP	4.88	□□□□□ -1.63
CDC9	YDL164C	GUK1	P15454	187 aa	Known RBP	4.88	□□□□□ -1.63
CDC9	YDL164C	HOP1	P20050	605 aa		4.88	□□□□□ -1.63
CDC9	YDL164C	GSY1	P23337	708 aa		4.88	□□□□□ -1.63
CDC9	YDL164C	RPC53	P25441	422 aa		4.88	□□□□□ -1.63
CDC9	YDL164C	HOG1	P32485	435 aa		4.88	□□□□□ -1.63
CDC9	YDL164C	SMY2	P32909	740 aa	Known RBP	4.88	□□□□□ -1.63
CDC9	YDL164C	NEM1	P38757	446 aa		4.88	□□□□□ -1.63
CDC9	YDL164C	RRF1	P38771	230 aa		4.88	□□□□□ -1.63
CDC9	YDL164C	VHR1	P40522	640 aa		4.88	□□□□□ -1.63
CDC9	YDL164C	PAP2	P53632	584 aa	Known RBP	4.88	□□□□□ -1.63
CDC9	YDL164C	SPP382	Q06411	708 aa	Predicted RBP	4.88	□□□□□ -1.63
CDC9	YDL164C	YDR306C	Q06640	478 aa		4.88	□□□□□ -1.63
CDC9	YDL164C	HSF1	P10961	833 aa		4.87	□□□□□ -1.63
CDC9	YDL164C	POL4	P25615	582 aa		4.87	□□□□□ -1.63
CDC9	YDL164C	MDJ1	P35191	511 aa		4.87	□□□□□ -1.63
CDC9	YDL164C	YKL050C	P35736	922 aa		4.87	□□□□□ -1.63
CDC9	YDL164C	IML2	P47031	731 aa		4.87	□□□□□ -1.63
CDC9	YDL164C	ERO1	Q03103	563 aa		4.87	□□□□□ -1.63
CDC9	YDL164C	PRP3	Q03338	469 aa	Predicted RBP	4.87	□□□□□ -1.63
CDC9	YDL164C	UTP5	Q04177	643 aa	Known RBP	4.87	□□□□□ -1.63
CDC9	YDL164C	HIM1	Q06674	414 aa		4.87	□□□□□ -1.63
CDC9	YDL164C	GLO4	Q12320	285 aa		4.87	□□□□□ -1.63
CDC9	YDL164C	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	4.86	□□□□□ -1.63	not detected
CDC9	YDL164C	DAL7	P21826	554 aa		4.86	□□□□□ -1.63
CDC9	YDL164C	CBF2	P32504	956 aa		4.86	□□□□□ -1.63
CDC9	YDL164C	YLR345W	Q06137	509 aa		4.86	□□□□□ -1.63
CDC9	YDL164C	EST2	Q06163	884 aa		4.86	□□□□□ -1.63
CDC9	YDL164C	RRG1	Q12167	365 aa	Predicted RBP	4.86	□□□□□ -1.63
CDC9	YDL164C	YKU70	P32807	602 aa		4.86	□□□□□ -1.63
CDC9	YDL164C	UBS1	P38290	277 aa		4.86	□□□□□ -1.63
CDC9	YDL164C	SLS1	P42900	643 aa		4.86	□□□□□ -1.63
CDC9	YDL164C	RBG2	P53295	368 aa	Known RBP	4.86	□□□□□ -1.63
CDC9	YDL164C	YDR131C	Q03899	556 aa		4.86	□□□□□ -1.63
CDC9	YDL164C	OMS1	Q06668	471 aa		4.86	□□□□□ -1.63
CDC9	YDL164C	PEX15	Q08215	383 aa		4.86	□□□□□ -1.63
CDC9	YDL164C	GUP2	Q08929	609 aa		4.86	□□□□□ -1.63
CDC9	YDL164C	HFI1	Q12060	488 aa		4.86	□□□□□ -1.63
CDC9	YDL164C	SPO21	Q12411	609 aa		4.86	□□□□□ -1.63
CDC9	YDL164C	INO80	P53115	1489 aa		4.85	□□□□□ -1.63
CDC9	YDL164C	SPS1	P08458	490 aa		4.85	□□□□□ -1.63
CDC9	YDL164C	CDC60	P26637	1090 aa	Known RBP	4.85	□□□□□ -1.63
CDC9	YDL164C	MLS1	P30952	554 aa		4.85	□□□□□ -1.63
CDC9	YDL164C	EBP2	P36049	427 aa	Known RBP	4.85	□□□□□ -1.63
CDC9	YDL164C	EAF5	P39995	279 aa		4.85	□□□□□ -1.63
CDC9	YDL164C	NPP2	P39997	493 aa		4.85	□□□□□ -1.63
CDC9	YDL164C	ENV11	P53246	860 aa		4.85	□□□□□ -1.63
CDC9	YDL164C	ATP25	Q03153	612 aa		4.85	□□□□□ -1.63
CDC9	YDL164C	TLG1	Q03322	224 aa		4.85	□□□□□ -1.63
CDC9	YDL164C	SKY1	Q03656	742 aa		4.85	□□□□□ -1.63
CDC9	YDL164C	RCF1	Q03713	159 aa		4.85	□□□□□ -1.63
CDC9	YDL164C	HSP42	Q12329	375 aa		4.85	□□□□□ -1.63
CDC9	YDL164C	TCB1	Q12466	1186 aa		4.85	□□□□□ -1.63
CDC9	YDL164C	CBP3	P21560	335 aa		4.85	□□□□□ -1.63
CDC9	YDL164C	RER1	P25560	188 aa		4.85	□□□□□ -1.63
CDC9	YDL164C	PER1	P25625	357 aa		4.85	□□□□□ -1.63
CDC9	YDL164C	LAM1	P38851	1228 aa		4.85	□□□□□ -1.63
CDC9	YDL164C	PUS4	P48567	403 aa	Known RBP	4.85	□□□□□ -1.63
CDC9	YDL164C	ENV7	Q12003	364 aa		4.85	□□□□□ -1.63
CDC9	YDL164C	HSH49	Q99181	213 aa	Predicted RBP	4.85	□□□□□ -1.63
CDC9	YDL164C	LEU1	P07264	779 aa	Known RBP	4.84	□□□□□ -1.63
CDC9	YDL164C	ADP1	P25371	1049 aa		4.84	□□□□□ -1.63
CDC9	YDL164C	PDC6	P26263	563 aa	Known RBP	4.84	□□□□□ -1.63
CDC9	YDL164C	STE13	P33894	931 aa		4.84	□□□□□ -1.63
CDC9	YDL164C	OAF3	P36023	863 aa		4.84	□□□□□ -1.63
CDC9	YDL164C	MCM7	P38132	845 aa		4.84	□□□□□ -1.63
CDC9	YDL164C	PNT1	P38969	423 aa		4.84	□□□□□ -1.63
CDC9	YDL164C	MDE1	P47095	244 aa		4.84	□□□□□ -1.63
CDC9	YDL164C	YGR153W	P48238	217 aa		4.84	□□□□□ -1.63
CDC9	YDL164C	UBC9	P50623	157 aa	Predicted RBP	4.84	□□□□□ -1.63
CDC9	YDL164C	TEP1	P53916	434 aa		4.84	□□□□□ -1.63
CDC9	YDL164C	APM4	Q99186	491 aa		4.84	□□□□□ -1.63
CDC9	YDL164C	CDC26	P14724	124 aa		4.84	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 10.2 ms