RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 ERC2O15083 957 aa6.61□□□□□ -1.35
SCN1A-216ENST00000637968 EPB41L2O43491 1005 aaKnown RBP6.61□□□□□ -1.35
SCN1A-216ENST00000637968 ZNF75DP51815 510 aa6.61□□□□□ -1.35
SCN1A-216ENST00000637968 FAM177A1Q8N128 213 aaPredicted RBP6.61□□□□□ -1.35
SCN1A-216ENST00000637968 RMDN2Q96LZ7 410 aa6.61□□□□□ -1.35
SCN1A-216ENST00000637968 MAGEA8P43361 318 aa6.6□□□□□ -1.35
SCN1A-216ENST00000637968 CCT5P48643 541 aa6.6□□□□□ -1.35
SCN1A-216ENST00000637968 TUBB4BP68371 445 aa6.6□□□□□ -1.35
SCN1A-216ENST00000637968 SLC30A9Q6PML9 568 aa6.6□□□□□ -1.35
SCN1A-216ENST00000637968 CHD1LQ86WJ1 897 aa6.6□□□□□ -1.35
SCN1A-216ENST00000637968 CCDC150Q8NCX0 1101 aa6.6□□□□□ -1.35
SCN1A-216ENST00000637968 BICD2Q8TD16 824 aa6.6□□□□□ -1.35
SCN1A-216ENST00000637968 OSBPL9Q96SU4 736 aa6.6□□□□□ -1.35
SCN1A-216ENST00000637968 FAM169AQ9Y6X4 670 aa6.6□□□□□ -1.35
SCN1A-216ENST00000637968 RPSAP08865 295 aaKnown RBP6.6□□□□□ -1.35
SCN1A-216ENST00000637968 SESN3P58005 492 aa6.6□□□□□ -1.35
SCN1A-216ENST00000637968 CCDC92Q53HC0 331 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-216ENST00000637968 SDCCAG8Q86SQ7 713 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-216ENST00000637968 TRIM42Q8IWZ5 723 aa6.6□□□□□ -1.35
SCN1A-216ENST00000637968 TSPAN18Q96SJ8 248 aa6.6□□□□□ -1.35
SCN1A-216ENST00000637968 PDE11AQ9HCR9 933 aa6.6□□□□□ -1.35
SCN1A-216ENST00000637968 CEP104O60308 925 aa6.6□□□□□ -1.35
SCN1A-216ENST00000637968 BUB1BO60566 1050 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-216ENST00000637968 TUBBP07437 444 aa6.6□□□□□ -1.35
SCN1A-216ENST00000637968 MCM3P25205 808 aa6.6□□□□□ -1.35
SCN1A-216ENST00000637968 CCDC38Q502W7 563 aa6.6□□□□□ -1.35
SCN1A-216ENST00000637968 ISM2Q6H9L7 571 aa6.6□□□□□ -1.35
SCN1A-216ENST00000637968 CAPRIN2Q6IMN6 1127 aaKnown RBP6.6□□□□□ -1.35
SCN1A-216ENST00000637968 ZGPATQ8N5A5 531 aaKnown RBP6.6□□□□□ -1.35
SCN1A-216ENST00000637968 FAM76AQ8TAV0 307 aa6.6□□□□□ -1.35
SCN1A-216ENST00000637968 ATG3Q9NT62 314 aa6.6□□□□□ -1.35
SCN1A-216ENST00000637968 NLRP1Q9C000 1473 aa6.6□□□□□ -1.35
SCN1A-216ENST00000637968 KIF5BP33176 963 aa6.59□□□□□ -1.35
SCN1A-216ENST00000637968 ZNF165P49910 485 aa6.59□□□□□ -1.35
SCN1A-216ENST00000637968 WHAMMP3Q1A5X7 153 aa6.59□□□□□ -1.35
SCN1A-216ENST00000637968 CPLX2Q6PUV4 134 aaKnown RBP6.59□□□□□ -1.35
SCN1A-216ENST00000637968 TBC1D9Q6ZT07 1266 aa6.59□□□□□ -1.35
SCN1A-216ENST00000637968 TCHPQ9BT92 498 aa6.59□□□□□ -1.35
SCN1A-216ENST00000637968 UTP14AQ9BVJ6 771 aaKnown RBP6.59□□□□□ -1.35
SCN1A-216ENST00000637968 HOMER3Q9NSC5 361 aa6.59□□□□□ -1.35
SCN1A-216ENST00000637968 EXOC6BQ9Y2D4 811 aa6.59□□□□□ -1.35
SCN1A-216ENST00000637968 FAN1Q9Y2M0 1017 aa6.59□□□□□ -1.35
SCN1A-216ENST00000637968 INSRP06213 1382 aa6.59□□□□□ -1.35
SCN1A-216ENST00000637968 ATAD2Q6PL18 1390 aa6.59□□□□□ -1.35
SCN1A-216ENST00000637968 GOLGA6L10A0A0M3HER8 536 aa6.59□□□□□ -1.35
SCN1A-216ENST00000637968 PAX3P23760 479 aa6.59□□□□□ -1.35
SCN1A-216ENST00000637968 HNRNPMP52272 730 aaKnown RBP eCLIP6.59□□□□□ -1.35
SCN1A-216ENST00000637968 PPP2R3AQ06190 1150 aa6.59□□□□□ -1.35
SCN1A-216ENST00000637968 CC2D1AQ6P1N0 951 aaPredicted RBP6.59□□□□□ -1.35
SCN1A-216ENST00000637968 BICC1Q9H694 974 aaKnown RBP6.59□□□□□ -1.35
SCN1A-216ENST00000637968 A1CFQ9NQ94 594 aaKnown RBP6.59□□□□□ -1.35
SCN1A-216ENST00000637968 ST20-MTHFSA0A0A6YYL1 179 aa6.59□□□□□ -1.35
SCN1A-216ENST00000637968 A6NNZ2 444 aa6.59□□□□□ -1.35
SCN1A-216ENST00000637968 CREB3O43889 395 aa6.59□□□□□ -1.35
SCN1A-216ENST00000637968 ECEL1O95672 775 aa6.59□□□□□ -1.35
SCN1A-216ENST00000637968 TUBB8Q3ZCM7 444 aa6.59□□□□□ -1.35
SCN1A-216ENST00000637968 B4GALNT2Q8NHY0 566 aa6.59□□□□□ -1.35
SCN1A-216ENST00000637968 WHAMMQ8TF30 809 aa6.59□□□□□ -1.35
SCN1A-216ENST00000637968 BICD1Q96G01 975 aa6.59□□□□□ -1.35
SCN1A-216ENST00000637968 TSC22D3Q99576 134 aa6.59□□□□□ -1.35
SCN1A-216ENST00000637968 PLEKHA4Q9H4M7 779 aa6.59□□□□□ -1.35
SCN1A-216ENST00000637968 FAM53CQ9NYF3 392 aa6.59□□□□□ -1.35
SCN1A-216ENST00000637968 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.59□□□□□ -1.35
SCN1A-216ENST00000637968 NSFL1CQ9UNZ2 370 aaKnown RBP6.59□□□□□ -1.35
SCN1A-216ENST00000637968 SMIM24O75264 130 aa6.59□□□□□ -1.36
SCN1A-216ENST00000637968 SSBP05455 408 aaKnown RBP eCLIP6.59□□□□□ -1.36
SCN1A-216ENST00000637968 CCDC175P0C221 793 aa6.59□□□□□ -1.36
SCN1A-216ENST00000637968 DESP17661 470 aa6.59□□□□□ -1.36
SCN1A-216ENST00000637968 LONRF2Q1L5Z9 754 aa6.59□□□□□ -1.36
SCN1A-216ENST00000637968 CCDC121Q6ZUS5 278 aa6.59□□□□□ -1.36
SCN1A-216ENST00000637968 DTNBP1Q96EV8 351 aa6.59□□□□□ -1.36
SCN1A-216ENST00000637968 ZNF396Q96N95 335 aaPredicted RBP6.59□□□□□ -1.36
SCN1A-216ENST00000637968 THUMPD2Q9BTF0 503 aaKnown RBP6.59□□□□□ -1.36
SCN1A-216ENST00000637968 FHOD3Q2V2M9 1422 aa6.59□□□□□ -1.36
SCN1A-216ENST00000637968 PRG4Q92954 1404 aaPredicted RBP6.58□□□□□ -1.36
SCN1A-216ENST00000637968 GPTP24298 496 aa6.58□□□□□ -1.36
SCN1A-216ENST00000637968 CCNHP51946 323 aaPredicted RBP6.58□□□□□ -1.36
SCN1A-216ENST00000637968 SPDYE1Q8NFV5 336 aaPredicted RBP6.58□□□□□ -1.36
SCN1A-216ENST00000637968 C17orf50Q8WW18 174 aa6.58□□□□□ -1.36
SCN1A-216ENST00000637968 YIPF3Q9GZM5 350 aa6.58□□□□□ -1.36
SCN1A-216ENST00000637968 ARAP1Q96P48 1450 aa6.58□□□□□ -1.36
SCN1A-216ENST00000637968 NDUFAB1O14561 156 aa6.58□□□□□ -1.36
SCN1A-216ENST00000637968 TYRO3Q06418 890 aa6.58□□□□□ -1.36
SCN1A-216ENST00000637968 PKP1Q13835 747 aa6.58□□□□□ -1.36
SCN1A-216ENST00000637968 ANO6Q4KMQ2 910 aa6.58□□□□□ -1.36
SCN1A-216ENST00000637968 RPS6KL1Q9Y6S9 549 aa6.58□□□□□ -1.36
SCN1A-216ENST00000637968 TOPBP1Q92547 1522 aa6.58□□□□□ -1.36
SCN1A-216ENST00000637968 SOS1Q07889 1333 aaPredicted RBP6.58□□□□□ -1.36
SCN1A-216ENST00000637968 ZMYM4Q5VZL5 1548 aa6.58□□□□□ -1.36
SCN1A-216ENST00000637968 TMF1P82094 1093 aa6.58□□□□□ -1.36
SCN1A-216ENST00000637968 APOBRQ0VD83 1088 aa6.58□□□□□ -1.36
SCN1A-216ENST00000637968 PRPF4BQ13523 1007 aaKnown RBP6.58□□□□□ -1.36
SCN1A-216ENST00000637968 LRRC8AQ8IWT6 810 aa6.58□□□□□ -1.36
SCN1A-216ENST00000637968 EXOC8Q8IYI6 725 aa6.58□□□□□ -1.36
SCN1A-216ENST00000637968 ZNF428Q96B54 188 aa6.58□□□□□ -1.36
SCN1A-216ENST00000637968 GCC1Q96CN9 775 aa6.58□□□□□ -1.36
SCN1A-216ENST00000637968 TBC1D31Q96DN5 1066 aa6.58□□□□□ -1.36
SCN1A-216ENST00000637968 FAM204AQ9H8W3 233 aa6.58□□□□□ -1.36
SCN1A-216ENST00000637968 CCDC151A5D8V7 595 aa6.57□□□□□ -1.36
SCN1A-216ENST00000637968 RPS6KA5O75582 802 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms