RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 RPGRQ92834 1020 aaKnown RBP31.34■■■□□ 2.61
CPSF1-214ENST00000622776 TSPYL4Q9UJ04 414 aa31.34■■■□□ 2.61
CPSF1-214ENST00000622776 GIGYF2Q6Y7W6 1299 aaKnown RBP31.33■■■□□ 2.61
CPSF1-214ENST00000622776 RIC1Q4ADV7 1423 aa31.32■■■□□ 2.61
CPSF1-214ENST00000622776 EPHX2P34913 555 aa31.31■■■□□ 2.6
CPSF1-214ENST00000622776 JDP2Q8WYK2 163 aa31.31■■■□□ 2.6
CPSF1-214ENST00000622776 NTSR2O95665 410 aa31.3■■■□□ 2.6
CPSF1-214ENST00000622776 ITGBL1O95965 494 aaPredicted RBP31.3■■■□□ 2.6
CPSF1-214ENST00000622776 RNF123Q5XPI4 1314 aa31.29■■■□□ 2.6
CPSF1-214ENST00000622776 RIPK4P57078 832 aa31.29■■■□□ 2.6
CPSF1-214ENST00000622776 GPC2Q8N158 579 aa31.29■■■□□ 2.6
CPSF1-214ENST00000622776 CRAMP1Q96RY5 1269 aa31.29■■■□□ 2.6
CPSF1-214ENST00000622776 CLEC11AQ9Y240 323 aa31.29■■■□□ 2.6
CPSF1-214ENST00000622776 EIF2S2P20042 333 aaKnown RBP31.28■■■□□ 2.6
CPSF1-214ENST00000622776 PDIA6Q15084 440 aa31.28■■■□□ 2.6
CPSF1-214ENST00000622776 LRP10Q7Z4F1 713 aa31.28■■■□□ 2.6
CPSF1-214ENST00000622776 PNMA8AQ86V59 439 aaPredicted RBP31.28■■■□□ 2.6
CPSF1-214ENST00000622776 RBM17Q96I25 401 aaKnown RBP31.28■■■□□ 2.6
CPSF1-214ENST00000622776 GRIPAP1Q4V328 841 aa31.27■■■□□ 2.6
CPSF1-214ENST00000622776 PARP10Q53GL7 1025 aa31.27■■■□□ 2.6
CPSF1-214ENST00000622776 PPP1R42Q7Z4L9 355 aa31.27■■■□□ 2.6
CPSF1-214ENST00000622776 CNTNAP1P78357 1384 aa31.27■■■□□ 2.6
CPSF1-214ENST00000622776 C3orf67Q6ZVT6 689 aa31.26■■■□□ 2.59
CPSF1-214ENST00000622776 TMEM88BA6NKF7 163 aa31.25■■■□□ 2.59
CPSF1-214ENST00000622776 EIF6P56537 245 aaKnown RBP31.25■■■□□ 2.59
CPSF1-214ENST00000622776 RALBP1Q15311 655 aa31.25■■■□□ 2.59
CPSF1-214ENST00000622776 BABAM1Q9NWV8 329 aa31.25■■■□□ 2.59
CPSF1-214ENST00000622776 PPEF1O14829 653 aaPredicted RBP31.24■■■□□ 2.59
CPSF1-214ENST00000622776 COL4A5P29400 1685 aa31.23■■■□□ 2.59
CPSF1-214ENST00000622776 TCERG1O14776 1098 aaKnown RBP31.23■■■□□ 2.59
CPSF1-214ENST00000622776 CAPN15O75808 1086 aa31.23■■■□□ 2.59
CPSF1-214ENST00000622776 ANXA1P04083 346 aa31.23■■■□□ 2.59
CPSF1-214ENST00000622776 TMPOP42166 694 aaKnown RBP31.23■■■□□ 2.59
CPSF1-214ENST00000622776 PROSER3Q2NL68 480 aa31.23■■■□□ 2.59
CPSF1-214ENST00000622776 SLC51AQ86UW1 340 aa31.23■■■□□ 2.59
CPSF1-214ENST00000622776 LARGE2Q8N3Y3 721 aa31.23■■■□□ 2.59
CPSF1-214ENST00000622776 NLRP3Q96P20 1036 aa31.23■■■□□ 2.59
CPSF1-214ENST00000622776 GJA3Q9Y6H8 435 aa31.23■■■□□ 2.59
CPSF1-214ENST00000622776 ADAMTSL1Q8N6G6 1762 aa31.22■■■□□ 2.59
CPSF1-214ENST00000622776 CNTROBQ8N137 903 aa31.22■■■□□ 2.59
CPSF1-214ENST00000622776 UTP14AQ9BVJ6 771 aaKnown RBP31.22■■■□□ 2.59
CPSF1-214ENST00000622776 LMOD3Q0VAK6 560 aa31.21■■■□□ 2.59
CPSF1-214ENST00000622776 SLC10A5Q5PT55 438 aa31.21■■■□□ 2.59
CPSF1-214ENST00000622776 MAP1SQ66K74 1059 aaPredicted RBP31.21■■■□□ 2.59
CPSF1-214ENST00000622776 LMOD1P29536 600 aaPredicted RBP31.18■■■□□ 2.58
CPSF1-214ENST00000622776 VEGFBP49765 207 aa31.18■■■□□ 2.58
CPSF1-214ENST00000622776 COPS6Q7L5N1 327 aa31.17■■■□□ 2.58
CPSF1-214ENST00000622776 NECTIN2Q92692 538 aa31.17■■■□□ 2.58
CPSF1-214ENST00000622776 TMX4Q9H1E5 349 aaPredicted RBP31.17■■■□□ 2.58
CPSF1-214ENST00000622776 ATP6V0A2Q9Y487 856 aa31.17■■■□□ 2.58
CPSF1-214ENST00000622776 NIM1KQ8IY84 436 aa31.16■■■□□ 2.58
CPSF1-214ENST00000622776 FOXN1O15353 648 aa31.15■■■□□ 2.58
CPSF1-214ENST00000622776 PPIP5K2O43314 1243 aa31.15■■■□□ 2.58
CPSF1-214ENST00000622776 EPS15P42566 896 aa31.15■■■□□ 2.58
CPSF1-214ENST00000622776 SCNN1DP51172 638 aa31.15■■■□□ 2.58
CPSF1-214ENST00000622776 AIMP1Q12904 312 aaKnown RBP31.15■■■□□ 2.58
CPSF1-214ENST00000622776 HSP90AB3PQ58FF7 597 aa31.15■■■□□ 2.58
CPSF1-214ENST00000622776 XAGE3Q8WTP9 111 aa31.15■■■□□ 2.58
CPSF1-214ENST00000622776 NLRP10Q86W26 655 aa31.14■■■□□ 2.58
CPSF1-214ENST00000622776 NEUROD2Q15784 382 aa31.13■■■□□ 2.57
CPSF1-214ENST00000622776 VPS33BQ9H267 617 aa31.13■■■□□ 2.57
CPSF1-214ENST00000622776 ABCC4O15439 1325 aa31.13■■■□□ 2.57
CPSF1-214ENST00000622776 LTBP1Q14766 1721 aa31.12■■■□□ 2.57
CPSF1-214ENST00000622776 CHL1O00533 1208 aa31.12■■■□□ 2.57
CPSF1-214ENST00000622776 AOC3Q16853 763 aa31.12■■■□□ 2.57
CPSF1-214ENST00000622776 CCDC146Q8IYE0 955 aa31.12■■■□□ 2.57
CPSF1-214ENST00000622776 DDX21Q9NR30 783 aaKnown RBP eCLIP31.12■■■□□ 2.57
CPSF1-214ENST00000622776 RASSF10A6NK89 507 aa31.11■■■□□ 2.57
CPSF1-214ENST00000622776 HCLS1P14317 486 aaPredicted RBP31.11■■■□□ 2.57
CPSF1-214ENST00000622776 TCIRG1Q13488 830 aa31.11■■■□□ 2.57
CPSF1-214ENST00000622776 KRT24Q2M2I5 525 aa31.11■■■□□ 2.57
CPSF1-214ENST00000622776 DEFB115Q30KQ5 88 aa31.11■■■□□ 2.57
CPSF1-214ENST00000622776 MYBBP1AQ9BQG0 1328 aaKnown RBP31.1■■■□□ 2.57
CPSF1-214ENST00000622776 BBOX1O75936 387 aa31.1■■■□□ 2.57
CPSF1-214ENST00000622776 SUPT20HQ8NEM7 779 aa31.1■■■□□ 2.57
CPSF1-214ENST00000622776 AIDAQ96BJ3 306 aa31.09■■■□□ 2.57
CPSF1-214ENST00000622776 RTFDC1Q9BY42 306 aaPredicted RBP31.09■■■□□ 2.57
CPSF1-214ENST00000622776 TRMT112Q9UI30 125 aaKnown RBP31.09■■■□□ 2.57
CPSF1-214ENST00000622776 DDX10Q13206 875 aaKnown RBP31.08■■■□□ 2.57
CPSF1-214ENST00000622776 USP50Q70EL3 339 aaPredicted RBP31.08■■■□□ 2.57
CPSF1-214ENST00000622776 SP8Q8IXZ3 490 aa31.08■■■□□ 2.57
CPSF1-214ENST00000622776 ANKRD36CQ5JPF3 1778 aa31.07■■■□□ 2.56
CPSF1-214ENST00000622776 CTCFP49711 727 aaPredicted RBP31.07■■■□□ 2.56
CPSF1-214ENST00000622776 PRDM10Q9NQV6 1147 aa31.07■■■□□ 2.56
CPSF1-214ENST00000622776 WBP1LQ9NX94 342 aa31.07■■■□□ 2.56
CPSF1-214ENST00000622776 ZNRF3Q9ULT6 936 aa31.07■■■□□ 2.56
CPSF1-214ENST00000622776 ABT1Q9ULW3 272 aaKnown RBP31.07■■■□□ 2.56
CPSF1-214ENST00000622776 TRIM35Q9UPQ4 493 aa31.07■■■□□ 2.56
CPSF1-214ENST00000622776 LAS1LQ9Y4W2 734 aaKnown RBP31.07■■■□□ 2.56
CPSF1-214ENST00000622776 SH3TC1Q8TE82 1336 aa31.06■■■□□ 2.56
CPSF1-214ENST00000622776 DPP8Q6V1X1 898 aaPredicted RBP31.06■■■□□ 2.56
CPSF1-214ENST00000622776 DDX46Q7L014 1031 aaKnown RBP31.06■■■□□ 2.56
CPSF1-214ENST00000622776 MPNDQ8N594 471 aa31.06■■■□□ 2.56
CPSF1-214ENST00000622776 RUNDC1Q96C34 613 aa31.06■■■□□ 2.56
CPSF1-214ENST00000622776 FMR1Q06787 632 aaKnown RBP eCLIP31.05■■■□□ 2.562e-6■■■□□ 15.2
CPSF1-214ENST00000622776 CXCL9Q07325 125 aa31.05■■■□□ 2.56
CPSF1-214ENST00000622776 GPRC5DQ9NZD1 345 aa31.05■■■□□ 2.56
CPSF1-214ENST00000622776 CHPF2Q9P2E5 772 aa31.05■■■□□ 2.56
CPSF1-214ENST00000622776 LAMB2P55268 1798 aa31.04■■■□□ 2.56
CPSF1-214ENST00000622776 WDR33Q9C0J8 1336 aaKnown RBP31.03■■■□□ 2.56
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms