RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 CRAMP1Q96RY5 1269 aa23.42■■□□□ 1.34
SHKBP1-227ENST00000602011 TMX4Q9H1E5 349 aaPredicted RBP23.42■■□□□ 1.34
SHKBP1-227ENST00000602011 TSPYL4Q9UJ04 414 aa23.42■■□□□ 1.34
SHKBP1-227ENST00000602011 HACL1Q9UJ83 578 aa23.42■■□□□ 1.34
SHKBP1-227ENST00000602011 CLEC11AQ9Y240 323 aa23.42■■□□□ 1.34
SHKBP1-227ENST00000602011 SCN4AP35499 1836 aa23.42■■□□□ 1.34
SHKBP1-227ENST00000602011 RNF123Q5XPI4 1314 aa23.41■■□□□ 1.34
SHKBP1-227ENST00000602011 MYL6BP14649 208 aa23.41■■□□□ 1.34
SHKBP1-227ENST00000602011 VEGFBP49765 207 aa23.41■■□□□ 1.34
SHKBP1-227ENST00000602011 RIPK4P57078 832 aa23.41■■□□□ 1.34
SHKBP1-227ENST00000602011 TTLL7Q6ZT98 887 aa23.41■■□□□ 1.34
SHKBP1-227ENST00000602011 RBM17Q96I25 401 aaKnown RBP23.41■■□□□ 1.34
SHKBP1-227ENST00000602011 ABCC12Q96J65 1359 aa23.4■■□□□ 1.34
SHKBP1-227ENST00000602011 NUTM1Q86Y26 1132 aa23.4■■□□□ 1.34
SHKBP1-227ENST00000602011 GPC2Q8N158 579 aa23.4■■□□□ 1.34
SHKBP1-227ENST00000602011 EPHX2P34913 555 aa23.39■■□□□ 1.33
SHKBP1-227ENST00000602011 MAP1SQ66K74 1059 aaPredicted RBP23.39■■□□□ 1.33
SHKBP1-227ENST00000602011 NLRP3Q96P20 1036 aa23.39■■□□□ 1.33
SHKBP1-227ENST00000602011 THUMPD2Q9BTF0 503 aaKnown RBP23.39■■□□□ 1.33
SHKBP1-227ENST00000602011 VPS33BQ9H267 617 aa23.39■■□□□ 1.33
SHKBP1-227ENST00000602011 TMEM88BA6NKF7 163 aa23.38■■□□□ 1.33
SHKBP1-227ENST00000602011 HSP90AB3PQ58FF7 597 aa23.38■■□□□ 1.33
SHKBP1-227ENST00000602011 SLC10A5Q5PT55 438 aa23.38■■□□□ 1.33
SHKBP1-227ENST00000602011 SUSD4Q5VX71 490 aa23.38■■□□□ 1.33
SHKBP1-227ENST00000602011 ZBTB3Q9H5J0 574 aa23.38■■□□□ 1.33
SHKBP1-227ENST00000602011 EIF6P56537 245 aaKnown RBP23.37■■□□□ 1.33
SHKBP1-227ENST00000602011 COL4A5P29400 1685 aa23.37■■□□□ 1.33
SHKBP1-227ENST00000602011 ADAMTSL1Q8N6G6 1762 aa23.37■■□□□ 1.33
SHKBP1-227ENST00000602011 GPTP24298 496 aa23.36■■□□□ 1.33
SHKBP1-227ENST00000602011 SNED1Q8TER0 1413 aa23.35■■□□□ 1.33
SHKBP1-227ENST00000602011 LAMB4A4D0S4 1761 aa23.35■■□□□ 1.33
SHKBP1-227ENST00000602011 NTSR2O95665 410 aa23.35■■□□□ 1.33
SHKBP1-227ENST00000602011 TMPOP42166 694 aaKnown RBP23.35■■□□□ 1.33
SHKBP1-227ENST00000602011 UTP14AQ9BVJ6 771 aaKnown RBP23.35■■□□□ 1.33
SHKBP1-227ENST00000602011 UBN2Q6ZU65 1347 aa23.34■■□□□ 1.33
SHKBP1-227ENST00000602011 TCERG1O14776 1098 aaKnown RBP23.34■■□□□ 1.33
SHKBP1-227ENST00000602011 CNTROBQ8N137 903 aa23.34■■□□□ 1.33
SHKBP1-227ENST00000602011 GJA3Q9Y6H8 435 aa23.34■■□□□ 1.33
SHKBP1-227ENST00000602011 KDM3BQ7LBC6 1761 aa23.34■■□□□ 1.33
SHKBP1-227ENST00000602011 EIF2S2P20042 333 aaKnown RBP23.33■■□□□ 1.33
SHKBP1-227ENST00000602011 FMR1Q06787 632 aaKnown RBP eCLIP23.33■■□□□ 1.33
SHKBP1-227ENST00000602011 PDIA6Q15084 440 aa23.33■■□□□ 1.33
SHKBP1-227ENST00000602011 LRP10Q7Z4F1 713 aa23.33■■□□□ 1.33
SHKBP1-227ENST00000602011 BBOX1O75936 387 aa23.32■■□□□ 1.32
SHKBP1-227ENST00000602011 SUPT20HQ8NEM7 779 aa23.32■■□□□ 1.32
SHKBP1-227ENST00000602011 NUP98P52948 1817 aa23.31■■□□□ 1.32
SHKBP1-227ENST00000602011 LTBP1Q14766 1721 aa23.31■■□□□ 1.32
SHKBP1-227ENST00000602011 PPEF1O14829 653 aaPredicted RBP23.31■■□□□ 1.32
SHKBP1-227ENST00000602011 LMOD1P29536 600 aaPredicted RBP23.31■■□□□ 1.32
SHKBP1-227ENST00000602011 LBX1P52954 281 aa23.31■■□□□ 1.32
SHKBP1-227ENST00000602011 C3orf67Q6ZVT6 689 aa23.31■■□□□ 1.32
SHKBP1-227ENST00000602011 LARGE2Q8N3Y3 721 aa23.31■■□□□ 1.32
SHKBP1-227ENST00000602011 AIDAQ96BJ3 306 aa23.31■■□□□ 1.32
SHKBP1-227ENST00000602011 DLG5Q8TDM6 1919 aa23.31■■□□□ 1.32
SHKBP1-227ENST00000602011 CTCFP49711 727 aaPredicted RBP23.3■■□□□ 1.32
SHKBP1-227ENST00000602011 PRDM10Q9NQV6 1147 aa23.3■■□□□ 1.32
SHKBP1-227ENST00000602011 WBP1LQ9NX94 342 aa23.3■■□□□ 1.32
SHKBP1-227ENST00000602011 ATP6V0A2Q9Y487 856 aa23.3■■□□□ 1.32
SHKBP1-227ENST00000602011 CHL1O00533 1208 aa23.29■■□□□ 1.32
SHKBP1-227ENST00000602011 DDX21Q9NR30 783 aaKnown RBP eCLIP23.29■■□□□ 1.32
SHKBP1-227ENST00000602011 MYBBP1AQ9BQG0 1328 aaKnown RBP23.29■■□□□ 1.32
SHKBP1-227ENST00000602011 HOXB7P09629 217 aa23.28■■□□□ 1.32
SHKBP1-227ENST00000602011 EPS15P42566 896 aa23.28■■□□□ 1.32
SHKBP1-227ENST00000602011 DEFB115Q30KQ5 88 aa23.28■■□□□ 1.32
SHKBP1-227ENST00000602011 COPS6Q7L5N1 327 aa23.28■■□□□ 1.32
SHKBP1-227ENST00000602011 NIM1KQ8IY84 436 aa23.28■■□□□ 1.32
SHKBP1-227ENST00000602011 ABT1Q9ULW3 272 aaKnown RBP23.28■■□□□ 1.32
SHKBP1-227ENST00000602011 RASSF10A6NK89 507 aa23.27■■□□□ 1.32
SHKBP1-227ENST00000602011 TCIRG1Q13488 830 aa23.27■■□□□ 1.32
SHKBP1-227ENST00000602011 USP50Q70EL3 339 aaPredicted RBP23.27■■□□□ 1.32
SHKBP1-227ENST00000602011 TMC4Q7Z404 712 aa23.27■■□□□ 1.32
SHKBP1-227ENST00000602011 RUNDC1Q96C34 613 aa23.27■■□□□ 1.32
SHKBP1-227ENST00000602011 SCNN1DP51172 638 aa23.26■■□□□ 1.31
SHKBP1-227ENST00000602011 SP8Q8IXZ3 490 aa23.26■■□□□ 1.31
SHKBP1-227ENST00000602011 RTFDC1Q9BY42 306 aaPredicted RBP23.26■■□□□ 1.31
SHKBP1-227ENST00000602011 HSPA8P11142 646 aaKnown RBP23.25■■□□□ 1.31
SHKBP1-227ENST00000602011 WDR43Q15061 677 aaKnown RBP eCLIP23.25■■□□□ 1.31
SHKBP1-227ENST00000602011 NLRP10Q86W26 655 aa23.25■■□□□ 1.31
SHKBP1-227ENST00000602011 WDR33Q9C0J8 1336 aaKnown RBP23.25■■□□□ 1.31
SHKBP1-227ENST00000602011 PPIP5K2O43314 1243 aa23.24■■□□□ 1.31
SHKBP1-227ENST00000602011 DDX46Q7L014 1031 aaKnown RBP23.24■■□□□ 1.31
SHKBP1-227ENST00000602011 XAGE3Q8WTP9 111 aa23.24■■□□□ 1.31
SHKBP1-227ENST00000602011 SH3TC1Q8TE82 1336 aa23.24■■□□□ 1.31
SHKBP1-227ENST00000602011 TRAF5O00463 557 aa23.23■■□□□ 1.31
SHKBP1-227ENST00000602011 GRM1Q13255 1194 aa23.23■■□□□ 1.31
SHKBP1-227ENST00000602011 PROSER3Q2NL68 480 aa23.23■■□□□ 1.31
SHKBP1-227ENST00000602011 TRMT112Q9UI30 125 aaKnown RBP23.23■■□□□ 1.31
SHKBP1-227ENST00000602011 ZNRF3Q9ULT6 936 aa23.23■■□□□ 1.31
SHKBP1-227ENST00000602011 AIMP1Q12904 312 aaKnown RBP23.22■■□□□ 1.31
SHKBP1-227ENST00000602011 PAXIP1Q6ZW49 1069 aaPredicted RBP23.22■■□□□ 1.31
SHKBP1-227ENST00000602011 DBF4Q9UBU7 674 aaPredicted RBP23.22■■□□□ 1.31
SHKBP1-227ENST00000602011 ANXA1P04083 346 aa23.21■■□□□ 1.31
SHKBP1-227ENST00000602011 DDX10Q13206 875 aaKnown RBP23.21■■□□□ 1.31
SHKBP1-227ENST00000602011 NEUROD2Q15784 382 aa23.21■■□□□ 1.31
SHKBP1-227ENST00000602011 AOC3Q16853 763 aa23.21■■□□□ 1.31
SHKBP1-227ENST00000602011 DPP8Q6V1X1 898 aaPredicted RBP23.21■■□□□ 1.31
SHKBP1-227ENST00000602011 MPNDQ8N594 471 aa23.21■■□□□ 1.31
SHKBP1-227ENST00000602011 CHMP4AQ9BY43 222 aa23.21■■□□□ 1.31
SHKBP1-227ENST00000602011 ABCC4O15439 1325 aa23.21■■□□□ 1.31
SHKBP1-227ENST00000602011 CYP4F22Q6NT55 531 aa23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms