RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 ERBB4Q15303 1308 aa23.02■■□□□ 1.28
SHKBP1-223ENST00000600552 IQCA1LA6NCM1 817 aa23.01■■□□□ 1.27
SHKBP1-223ENST00000600552 PDIA6Q15084 440 aa23.01■■□□□ 1.27
SHKBP1-223ENST00000600552 KRT24Q2M2I5 525 aa23.01■■□□□ 1.27
SHKBP1-223ENST00000600552 CRY2Q49AN0 593 aa23.01■■□□□ 1.27
SHKBP1-223ENST00000600552 C3orf67Q6ZVT6 689 aa23.01■■□□□ 1.27
SHKBP1-223ENST00000600552 SLC51AQ86UW1 340 aa23.01■■□□□ 1.27
SHKBP1-223ENST00000600552 NTSR2O95665 410 aa23■■□□□ 1.27
SHKBP1-223ENST00000600552 COPS6Q7L5N1 327 aa23■■□□□ 1.27
SHKBP1-223ENST00000600552 JMYQ8N9B5 988 aa23■■□□□ 1.27
SHKBP1-223ENST00000600552 XAGE3Q8WTP9 111 aa23■■□□□ 1.27
SHKBP1-223ENST00000600552 RUNDC1Q96C34 613 aa23■■□□□ 1.27
SHKBP1-223ENST00000600552 UTP14AQ9BVJ6 771 aaKnown RBP23■■□□□ 1.27
SHKBP1-223ENST00000600552 GJA3Q9Y6H8 435 aa23■■□□□ 1.27
SHKBP1-223ENST00000600552 JDP2Q8WYK2 163 aa22.99■■□□□ 1.27
SHKBP1-223ENST00000600552 NLRP3Q96P20 1036 aa22.99■■□□□ 1.27
SHKBP1-223ENST00000600552 TAF1DQ9H5J8 278 aaPredicted RBP22.99■■□□□ 1.27
SHKBP1-223ENST00000600552 PPEF1O14829 653 aaPredicted RBP22.98■■□□□ 1.27
SHKBP1-223ENST00000600552 PARP10Q53GL7 1025 aa22.98■■□□□ 1.27
SHKBP1-223ENST00000600552 BABAM1Q9NWV8 329 aa22.98■■□□□ 1.27
SHKBP1-223ENST00000600552 HACL1Q9UJ83 578 aa22.98■■□□□ 1.27
SHKBP1-223ENST00000600552 ADAMTS8Q9UP79 889 aa22.98■■□□□ 1.27
SHKBP1-223ENST00000600552 HOXA10P31260 410 aaPredicted RBP22.97■■□□□ 1.27
SHKBP1-223ENST00000600552 LRP10Q7Z4F1 713 aa22.97■■□□□ 1.27
SHKBP1-223ENST00000600552 TMX4Q9H1E5 349 aaPredicted RBP22.97■■□□□ 1.27
SHKBP1-223ENST00000600552 MKRN1Q9UHC7 482 aaKnown RBP22.97■■□□□ 1.27
SHKBP1-223ENST00000600552 CC2D2BQ6DHV5 1058 aa22.96■■□□□ 1.27
SHKBP1-223ENST00000600552 LARGE2Q8N3Y3 721 aa22.96■■□□□ 1.27
SHKBP1-223ENST00000600552 L3MBTL3Q96JM7 780 aaPredicted RBP22.96■■□□□ 1.27
SHKBP1-223ENST00000600552 CRAMP1Q96RY5 1269 aa22.96■■□□□ 1.27
SHKBP1-223ENST00000600552 TRIM35Q9UPQ4 493 aa22.96■■□□□ 1.27
SHKBP1-223ENST00000600552 RNF123Q5XPI4 1314 aa22.96■■□□□ 1.27
SHKBP1-223ENST00000600552 HCLS1P14317 486 aaPredicted RBP22.95■■□□□ 1.26
SHKBP1-223ENST00000600552 EPHX2P34913 555 aa22.95■■□□□ 1.26
SHKBP1-223ENST00000600552 EIF6P56537 245 aaKnown RBP22.95■■□□□ 1.26
SHKBP1-223ENST00000600552 LDHDQ86WU2 507 aa22.95■■□□□ 1.26
SHKBP1-223ENST00000600552 PSMD1Q99460 953 aa22.95■■□□□ 1.26
SHKBP1-223ENST00000600552 IBTKQ9P2D0 1353 aaPredicted RBP22.95■■□□□ 1.26
SHKBP1-223ENST00000600552 FZD9O00144 591 aa22.94■■□□□ 1.26
SHKBP1-223ENST00000600552 CHL1O00533 1208 aa22.94■■□□□ 1.26
SHKBP1-223ENST00000600552 CHPF2Q9P2E5 772 aa22.94■■□□□ 1.26
SHKBP1-223ENST00000600552 TRMT112Q9UI30 125 aaKnown RBP22.94■■□□□ 1.26
SHKBP1-223ENST00000600552 HSP90AB3PQ58FF7 597 aa22.93■■□□□ 1.26
SHKBP1-223ENST00000600552 COL13A1Q5TAT6 717 aaPredicted RBP22.93■■□□□ 1.26
SHKBP1-223ENST00000600552 SCN4AP35499 1836 aa22.93■■□□□ 1.26
SHKBP1-223ENST00000600552 HDGFL1Q5TGJ6 251 aa22.92■■□□□ 1.26
SHKBP1-223ENST00000600552 NLRP10Q86W26 655 aa22.92■■□□□ 1.26
SHKBP1-223ENST00000600552 DDX21Q9NR30 783 aaKnown RBP eCLIP22.92■■□□□ 1.26
SHKBP1-223ENST00000600552 HSPA1AP0DMV8 641 aaKnown RBP22.91■■□□□ 1.26
SHKBP1-223ENST00000600552 HSPA1BP0DMV9 641 aaKnown RBP22.91■■□□□ 1.26
SHKBP1-223ENST00000600552 TCIRG1Q13488 830 aa22.91■■□□□ 1.26
SHKBP1-223ENST00000600552 GPC2Q8N158 579 aa22.91■■□□□ 1.26
SHKBP1-223ENST00000600552 CREBZFQ9NS37 354 aa22.91■■□□□ 1.26
SHKBP1-223ENST00000600552 ABCC4O15439 1325 aa22.9■■□□□ 1.26
SHKBP1-223ENST00000600552 PPIP5K2O43314 1243 aa22.9■■□□□ 1.26
SHKBP1-223ENST00000600552 SLC10A5Q5PT55 438 aa22.9■■□□□ 1.26
SHKBP1-223ENST00000600552 MAP1SQ66K74 1059 aaPredicted RBP22.9■■□□□ 1.26
SHKBP1-223ENST00000600552 NIM1KQ8IY84 436 aa22.9■■□□□ 1.26
SHKBP1-223ENST00000600552 RIC1Q4ADV7 1423 aa22.9■■□□□ 1.26
SHKBP1-223ENST00000600552 LMOD1P29536 600 aaPredicted RBP22.89■■□□□ 1.25
SHKBP1-223ENST00000600552 AOC3Q16853 763 aa22.88■■□□□ 1.25
SHKBP1-223ENST00000600552 GRIPAP1Q4V328 841 aa22.88■■□□□ 1.25
SHKBP1-223ENST00000600552 DDX46Q7L014 1031 aaKnown RBP22.88■■□□□ 1.25
SHKBP1-223ENST00000600552 PRKRIP1Q9H875 184 aaPredicted RBP22.88■■□□□ 1.25
SHKBP1-223ENST00000600552 ATP6V0A2Q9Y487 856 aa22.88■■□□□ 1.25
SHKBP1-223ENST00000600552 COL4A5P29400 1685 aa22.87■■□□□ 1.25
SHKBP1-223ENST00000600552 ATP5J2-PTCD1G3V325 749 aa22.87■■□□□ 1.25
SHKBP1-223ENST00000600552 CAPN15O75808 1086 aa22.87■■□□□ 1.25
SHKBP1-223ENST00000600552 RTL5Q5HYW3 569 aaPredicted RBP22.87■■□□□ 1.25
SHKBP1-223ENST00000600552 DUSP27Q5VZP5 1158 aa22.87■■□□□ 1.25
SHKBP1-223ENST00000600552 PNMA8AQ86V59 439 aaPredicted RBP22.87■■□□□ 1.25
SHKBP1-223ENST00000600552 SNED1Q8TER0 1413 aa22.87■■□□□ 1.25
SHKBP1-223ENST00000600552 SH3TC1Q8TE82 1336 aa22.86■■□□□ 1.25
SHKBP1-223ENST00000600552 ELL2O00472 640 aaPredicted RBP22.86■■□□□ 1.25
SHKBP1-223ENST00000600552 ITGBL1O95965 494 aaPredicted RBP22.86■■□□□ 1.25
SHKBP1-223ENST00000600552 DPP8Q6V1X1 898 aaPredicted RBP22.86■■□□□ 1.25
SHKBP1-223ENST00000600552 ANKRD13DQ6ZTN6 518 aa22.86■■□□□ 1.25
SHKBP1-223ENST00000600552 CNTROBQ8N137 903 aa22.86■■□□□ 1.25
SHKBP1-223ENST00000600552 ANKRD36CQ5JPF3 1778 aa22.86■■□□□ 1.25
SHKBP1-223ENST00000600552 PASKQ96RG2 1323 aa22.85■■□□□ 1.25
SHKBP1-223ENST00000600552 TMEM88BA6NKF7 163 aa22.85■■□□□ 1.25
SHKBP1-223ENST00000600552 APAF1O14727 1248 aa22.85■■□□□ 1.25
SHKBP1-223ENST00000600552 EPS15P42566 896 aa22.85■■□□□ 1.25
SHKBP1-223ENST00000600552 MBIPQ9NS73 344 aa22.85■■□□□ 1.25
SHKBP1-223ENST00000600552 DBF4Q9UBU7 674 aaPredicted RBP22.85■■□□□ 1.25
SHKBP1-223ENST00000600552 BBOX1O75936 387 aa22.84■■□□□ 1.25
SHKBP1-223ENST00000600552 MPNDQ8N594 471 aa22.84■■□□□ 1.25
SHKBP1-223ENST00000600552 PLBD2Q8NHP8 589 aa22.84■■□□□ 1.25
SHKBP1-223ENST00000600552 FAM89AQ96GI7 184 aa22.84■■□□□ 1.25
SHKBP1-223ENST00000600552 CFAP44Q96MT7 982 aa22.84■■□□□ 1.25
SHKBP1-223ENST00000600552 LAMB2P55268 1798 aa22.84■■□□□ 1.25
SHKBP1-223ENST00000600552 TAF1P21675 1872 aa22.83■■□□□ 1.25
SHKBP1-223ENST00000600552 SP8Q8IXZ3 490 aa22.83■■□□□ 1.25
SHKBP1-223ENST00000600552 TNS4Q8IZW8 715 aa22.83■■□□□ 1.25
SHKBP1-223ENST00000600552 SUPT20HQ8NEM7 779 aa22.83■■□□□ 1.25
SHKBP1-223ENST00000600552 HYPKQ9NX55 129 aa22.82■■□□□ 1.24
SHKBP1-223ENST00000600552 SCNN1DP51172 638 aa22.81■■□□□ 1.24
SHKBP1-223ENST00000600552 GRAPQ13588 217 aa22.81■■□□□ 1.24
SHKBP1-223ENST00000600552 GRAPLQ8TC17 118 aaPredicted RBP22.81■■□□□ 1.24
SHKBP1-223ENST00000600552 HOXB7P09629 217 aa22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms