RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 BABAM1Q9NWV8 329 aa15.51■□□□□ 0.07
CLIP3-204ENST00000590559 HSPA1AP0DMV8 641 aaKnown RBP15.5■□□□□ 0.07
CLIP3-204ENST00000590559 HSPA1BP0DMV9 641 aaKnown RBP15.5■□□□□ 0.07
CLIP3-204ENST00000590559 GTF2E1P29083 439 aaPredicted RBP15.5■□□□□ 0.07
CLIP3-204ENST00000590559 CC2D2BQ6DHV5 1058 aa15.5■□□□□ 0.07
CLIP3-204ENST00000590559 ZBTB3Q9H5J0 574 aa15.5■□□□□ 0.07
CLIP3-204ENST00000590559 MAPK8IP3Q9UPT6 1336 aa15.49■□□□□ 0.07
CLIP3-204ENST00000590559 GPTP24298 496 aa15.49■□□□□ 0.07
CLIP3-204ENST00000590559 C3orf67Q6ZVT6 689 aa15.49■□□□□ 0.07
CLIP3-204ENST00000590559 SLC51AQ86UW1 340 aa15.49■□□□□ 0.07
CLIP3-204ENST00000590559 CRAMP1Q96RY5 1269 aa15.49■□□□□ 0.07
CLIP3-204ENST00000590559 HACL1Q9UJ83 578 aa15.49■□□□□ 0.07
CLIP3-204ENST00000590559 CNTNAP1P78357 1384 aa15.49■□□□□ 0.07
CLIP3-204ENST00000590559 RALBP1Q15311 655 aa15.48■□□□□ 0.07
CLIP3-204ENST00000590559 GRIPAP1Q4V328 841 aa15.48■□□□□ 0.07
CLIP3-204ENST00000590559 SLC10A5Q5PT55 438 aa15.48■□□□□ 0.07
CLIP3-204ENST00000590559 GPC2Q8N158 579 aa15.48■□□□□ 0.07
CLIP3-204ENST00000590559 TSPYL4Q9UJ04 414 aa15.48■□□□□ 0.07
CLIP3-204ENST00000590559 EPHX2P34913 555 aa15.47■□□□□ 0.07
CLIP3-204ENST00000590559 TMPOP42166 694 aaKnown RBP15.47■□□□□ 0.07
CLIP3-204ENST00000590559 RIPK4P57078 832 aa15.47■□□□□ 0.07
CLIP3-204ENST00000590559 PROSER3Q2NL68 480 aa15.47■□□□□ 0.07
CLIP3-204ENST00000590559 PARP10Q53GL7 1025 aa15.47■□□□□ 0.07
CLIP3-204ENST00000590559 RNF123Q5XPI4 1314 aa15.46■□□□□ 0.07
CLIP3-204ENST00000590559 RPGRQ92834 1020 aaKnown RBP15.46■□□□□ 0.07
CLIP3-204ENST00000590559 MKRN1Q9UHC7 482 aaKnown RBP15.46■□□□□ 0.07
CLIP3-204ENST00000590559 TAF1P21675 1872 aa15.46■□□□□ 0.06
CLIP3-204ENST00000590559 DDX60Q8IY21 1712 aaKnown RBP15.46■□□□□ 0.06
CLIP3-204ENST00000590559 PPP1R42Q7Z4L9 355 aa15.45■□□□□ 0.06
CLIP3-204ENST00000590559 PNMA8AQ86V59 439 aaPredicted RBP15.45■□□□□ 0.06
CLIP3-204ENST00000590559 RBM17Q96I25 401 aaKnown RBP15.45■□□□□ 0.06
CLIP3-204ENST00000590559 TRPM7Q96QT4 1865 aa15.44■□□□□ 0.06
CLIP3-204ENST00000590559 LRRC37AA6NMS7 1700 aa15.44■□□□□ 0.06
CLIP3-204ENST00000590559 TMEM88BA6NKF7 163 aa15.44■□□□□ 0.06
CLIP3-204ENST00000590559 CHL1O00533 1208 aa15.44■□□□□ 0.06
CLIP3-204ENST00000590559 PPEF1O14829 653 aaPredicted RBP15.44■□□□□ 0.06
CLIP3-204ENST00000590559 ANXA1P04083 346 aa15.44■□□□□ 0.06
CLIP3-204ENST00000590559 JDP2Q8WYK2 163 aa15.44■□□□□ 0.06
CLIP3-204ENST00000590559 EIF2S2P20042 333 aaKnown RBP15.43■□□□□ 0.06
CLIP3-204ENST00000590559 SCNN1DP51172 638 aa15.43■□□□□ 0.06
CLIP3-204ENST00000590559 EAPPQ56P03 285 aaPredicted RBP15.43■□□□□ 0.06
CLIP3-204ENST00000590559 TNS4Q8IZW8 715 aa15.43■□□□□ 0.06
CLIP3-204ENST00000590559 NLRP3Q96P20 1036 aa15.43■□□□□ 0.06
CLIP3-204ENST00000590559 RTFDC1Q9BY42 306 aaPredicted RBP15.43■□□□□ 0.06
CLIP3-204ENST00000590559 VPS33BQ9H267 617 aa15.43■□□□□ 0.06
CLIP3-204ENST00000590559 TRIM35Q9UPQ4 493 aa15.43■□□□□ 0.06
CLIP3-204ENST00000590559 ATP6V0A2Q9Y487 856 aa15.43■□□□□ 0.06
CLIP3-204ENST00000590559 THSD7BQ9C0I4 1608 aa15.43■□□□□ 0.06
CLIP3-204ENST00000590559 LMOD3Q0VAK6 560 aa15.42■□□□□ 0.06
CLIP3-204ENST00000590559 COPS6Q7L5N1 327 aa15.42■□□□□ 0.06
CLIP3-204ENST00000590559 NLRP10Q86W26 655 aa15.42■□□□□ 0.06
CLIP3-204ENST00000590559 CNTROBQ8N137 903 aa15.42■□□□□ 0.06
CLIP3-204ENST00000590559 UTP14AQ9BVJ6 771 aaKnown RBP15.42■□□□□ 0.06
CLIP3-204ENST00000590559 ABCC4O15439 1325 aa15.42■□□□□ 0.06
CLIP3-204ENST00000590559 RASSF10A6NK89 507 aa15.41■□□□□ 0.06
CLIP3-204ENST00000590559 VEGFBP49765 207 aa15.41■□□□□ 0.06
CLIP3-204ENST00000590559 EIF6P56537 245 aaKnown RBP15.41■□□□□ 0.06
CLIP3-204ENST00000590559 MAP1SQ66K74 1059 aaPredicted RBP15.41■□□□□ 0.06
CLIP3-204ENST00000590559 DDX21Q9NR30 783 aaKnown RBP eCLIP15.41■□□□□ 0.06
CLIP3-204ENST00000590559 MYBBP1AQ9BQG0 1328 aaKnown RBP15.41■□□□□ 0.06
CLIP3-204ENST00000590559 DUOX1Q9NRD9 1551 aa15.41■□□□□ 0.06
CLIP3-204ENST00000590559 FOXN1O15353 648 aa15.4■□□□□ 0.06
CLIP3-204ENST00000590559 EPS15P42566 896 aa15.4■□□□□ 0.06
CLIP3-204ENST00000590559 TCIRG1Q13488 830 aa15.4■□□□□ 0.06
CLIP3-204ENST00000590559 KRT24Q2M2I5 525 aa15.4■□□□□ 0.06
CLIP3-204ENST00000590559 LARGE2Q8N3Y3 721 aa15.4■□□□□ 0.06
CLIP3-204ENST00000590559 XAGE3Q8WTP9 111 aa15.4■□□□□ 0.06
CLIP3-204ENST00000590559 HSP90AB3PQ58FF7 597 aa15.39■□□□□ 0.05
CLIP3-204ENST00000590559 SP8Q8IXZ3 490 aa15.39■□□□□ 0.05
CLIP3-204ENST00000590559 CLEC11AQ9Y240 323 aa15.39■□□□□ 0.05
CLIP3-204ENST00000590559 GJA3Q9Y6H8 435 aa15.39■□□□□ 0.05
CLIP3-204ENST00000590559 COL4A1P02462 1669 aa15.38■□□□□ 0.05
CLIP3-204ENST00000590559 TCERG1O14776 1098 aaKnown RBP15.38■□□□□ 0.05
CLIP3-204ENST00000590559 BBOX1O75936 387 aa15.38■□□□□ 0.05
CLIP3-204ENST00000590559 AOC3Q16853 763 aa15.38■□□□□ 0.05
CLIP3-204ENST00000590559 USP50Q70EL3 339 aaPredicted RBP15.38■□□□□ 0.05
CLIP3-204ENST00000590559 CCDC146Q8IYE0 955 aa15.38■□□□□ 0.05
CLIP3-204ENST00000590559 RUNDC1Q96C34 613 aa15.38■□□□□ 0.05
CLIP3-204ENST00000590559 PPIP5K2O43314 1243 aa15.37■□□□□ 0.05
CLIP3-204ENST00000590559 HOXB7P09629 217 aa15.37■□□□□ 0.05
CLIP3-204ENST00000590559 HCLS1P14317 486 aaPredicted RBP15.37■□□□□ 0.05
CLIP3-204ENST00000590559 CXCL9Q07325 125 aa15.37■□□□□ 0.05
CLIP3-204ENST00000590559 NIM1KQ8IY84 436 aa15.37■□□□□ 0.05
CLIP3-204ENST00000590559 NECTIN2Q92692 538 aa15.37■□□□□ 0.05
CLIP3-204ENST00000590559 PRDM10Q9NQV6 1147 aa15.37■□□□□ 0.05
CLIP3-204ENST00000590559 WBP1LQ9NX94 342 aa15.37■□□□□ 0.05
CLIP3-204ENST00000590559 LMOD1P29536 600 aaPredicted RBP15.36■□□□□ 0.05
CLIP3-204ENST00000590559 FMR1Q06787 632 aaKnown RBP eCLIP15.36■□□□□ 0.05
CLIP3-204ENST00000590559 AIMP1Q12904 312 aaKnown RBP15.36■□□□□ 0.05
CLIP3-204ENST00000590559 DDX10Q13206 875 aaKnown RBP15.36■□□□□ 0.05
CLIP3-204ENST00000590559 DEFB115Q30KQ5 88 aa15.36■□□□□ 0.05
CLIP3-204ENST00000590559 SUPT20HQ8NEM7 779 aa15.36■□□□□ 0.05
CLIP3-204ENST00000590559 ISCA1Q9BUE6 129 aa15.36■□□□□ 0.05
CLIP3-204ENST00000590559 GPRC5DQ9NZD1 345 aa15.36■□□□□ 0.05
CLIP3-204ENST00000590559 CHPF2Q9P2E5 772 aa15.36■□□□□ 0.05
CLIP3-204ENST00000590559 ZNRF3Q9ULT6 936 aa15.36■□□□□ 0.05
CLIP3-204ENST00000590559 ADAMTS8Q9UP79 889 aa15.36■□□□□ 0.05
CLIP3-204ENST00000590559 SH3TC1Q8TE82 1336 aa15.36■□□□□ 0.05
CLIP3-204ENST00000590559 KIAA2012Q0VF49 1180 aa15.35■□□□□ 0.05
CLIP3-204ENST00000590559 GRAPQ13588 217 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms