RNA–Protein interactions for RNA: ENST00000586863.5

ATG4D-206, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 4

Gene ATG4D, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-206ENST00000586863 LMOD3Q0VAK6 560 aa18.39■□□□□ 0.53
ATG4D-206ENST00000586863 CHADLQ6NUI6 762 aa18.39■□□□□ 0.53
ATG4D-206ENST00000586863 C3orf67Q6ZVT6 689 aa18.39■□□□□ 0.53
ATG4D-206ENST00000586863 SYNE4Q8N205 404 aa18.39■□□□□ 0.53
ATG4D-206ENST00000586863 BABAM1Q9NWV8 329 aa18.39■□□□□ 0.53
ATG4D-206ENST00000586863 IQCA1LA6NCM1 817 aa18.38■□□□□ 0.53
ATG4D-206ENST00000586863 HOXA10P31260 410 aaPredicted RBP18.38■□□□□ 0.53
ATG4D-206ENST00000586863 RPGRQ92834 1020 aaKnown RBP18.38■□□□□ 0.53
ATG4D-206ENST00000586863 TAF1DQ9H5J8 278 aaPredicted RBP18.38■□□□□ 0.53
ATG4D-206ENST00000586863 LAMB2P55268 1798 aa18.37■□□□□ 0.53
ATG4D-206ENST00000586863 NEUROD2Q15784 382 aa18.37■□□□□ 0.53
ATG4D-206ENST00000586863 NECTIN2Q92692 538 aa18.37■□□□□ 0.53
ATG4D-206ENST00000586863 PSMD1Q99460 953 aa18.37■□□□□ 0.53
ATG4D-206ENST00000586863 ADAMTSL1Q8N6G6 1762 aa18.37■□□□□ 0.53
ATG4D-206ENST00000586863 FZD9O00144 591 aa18.36■□□□□ 0.53
ATG4D-206ENST00000586863 KRT24Q2M2I5 525 aa18.36■□□□□ 0.53
ATG4D-206ENST00000586863 PARP10Q53GL7 1025 aa18.36■□□□□ 0.53
ATG4D-206ENST00000586863 PPP1R42Q7Z4L9 355 aa18.35■□□□□ 0.53
ATG4D-206ENST00000586863 LDHDQ86WU2 507 aa18.35■□□□□ 0.53
ATG4D-206ENST00000586863 RBM17Q96I25 401 aaKnown RBP18.35■□□□□ 0.53
ATG4D-206ENST00000586863 CRAMP1Q96RY5 1269 aa18.35■□□□□ 0.53
ATG4D-206ENST00000586863 TRIM35Q9UPQ4 493 aa18.35■□□□□ 0.53
ATG4D-206ENST00000586863 RNF123Q5XPI4 1314 aa18.34■□□□□ 0.53
ATG4D-206ENST00000586863 CHL1O00533 1208 aa18.34■□□□□ 0.53
ATG4D-206ENST00000586863 PPEF1O14829 653 aaPredicted RBP18.34■□□□□ 0.53
ATG4D-206ENST00000586863 CC2D2BQ6DHV5 1058 aa18.34■□□□□ 0.53
ATG4D-206ENST00000586863 COPS6Q7L5N1 327 aa18.34■□□□□ 0.53
ATG4D-206ENST00000586863 XAGE3Q8WTP9 111 aa18.34■□□□□ 0.53
ATG4D-206ENST00000586863 UTP14AQ9BVJ6 771 aaKnown RBP18.34■□□□□ 0.53
ATG4D-206ENST00000586863 PASKQ96RG2 1323 aa18.33■□□□□ 0.53
ATG4D-206ENST00000586863 LTBP1Q14766 1721 aa18.33■□□□□ 0.52
ATG4D-206ENST00000586863 TCERG1O14776 1098 aaKnown RBP18.33■□□□□ 0.52
ATG4D-206ENST00000586863 AIMP1Q12904 312 aaKnown RBP18.33■□□□□ 0.52
ATG4D-206ENST00000586863 WDR43Q15061 677 aaKnown RBP eCLIP18.33■□□□□ 0.52
ATG4D-206ENST00000586863 EAPPQ56P03 285 aaPredicted RBP18.33■□□□□ 0.52
ATG4D-206ENST00000586863 RUNDC1Q96C34 613 aa18.33■□□□□ 0.52
ATG4D-206ENST00000586863 CREBZFQ9NS37 354 aa18.33■□□□□ 0.52
ATG4D-206ENST00000586863 HACL1Q9UJ83 578 aa18.33■□□□□ 0.52
ATG4D-206ENST00000586863 EPHX2P34913 555 aa18.32■□□□□ 0.52
ATG4D-206ENST00000586863 SLC10A5Q5PT55 438 aa18.32■□□□□ 0.52
ATG4D-206ENST00000586863 COL13A1Q5TAT6 717 aaPredicted RBP18.32■□□□□ 0.52
ATG4D-206ENST00000586863 JDP2Q8WYK2 163 aa18.32■□□□□ 0.52
ATG4D-206ENST00000586863 NLRP3Q96P20 1036 aa18.32■□□□□ 0.52
ATG4D-206ENST00000586863 ADAMTS8Q9UP79 889 aa18.32■□□□□ 0.52
ATG4D-206ENST00000586863 LAS1LQ9Y4W2 734 aaKnown RBP18.32■□□□□ 0.52
ATG4D-206ENST00000586863 TAF1P21675 1872 aa18.32■□□□□ 0.52
ATG4D-206ENST00000586863 ABCC4O15439 1325 aa18.31■□□□□ 0.52
ATG4D-206ENST00000586863 HSPA1AP0DMV8 641 aaKnown RBP18.31■□□□□ 0.52
ATG4D-206ENST00000586863 HSPA1BP0DMV9 641 aaKnown RBP18.31■□□□□ 0.52
ATG4D-206ENST00000586863 NLRP10Q86W26 655 aa18.31■□□□□ 0.52
ATG4D-206ENST00000586863 GPC2Q8N158 579 aa18.31■□□□□ 0.52
ATG4D-206ENST00000586863 DDX21Q9NR30 783 aaKnown RBP eCLIP18.31■□□□□ 0.52
ATG4D-206ENST00000586863 HSP90AB3PQ58FF7 597 aa18.3■□□□□ 0.52
ATG4D-206ENST00000586863 LARGE2Q8N3Y3 721 aa18.3■□□□□ 0.52
ATG4D-206ENST00000586863 CHPF2Q9P2E5 772 aa18.3■□□□□ 0.52
ATG4D-206ENST00000586863 MKRN1Q9UHC7 482 aaKnown RBP18.3■□□□□ 0.52
ATG4D-206ENST00000586863 DDX60Q8IY21 1712 aaKnown RBP18.29■□□□□ 0.52
ATG4D-206ENST00000586863 ITGBL1O95965 494 aaPredicted RBP18.29■□□□□ 0.52
ATG4D-206ENST00000586863 HCLS1P14317 486 aaPredicted RBP18.29■□□□□ 0.52
ATG4D-206ENST00000586863 TCIRG1Q13488 830 aa18.29■□□□□ 0.52
ATG4D-206ENST00000586863 GRIPAP1Q4V328 841 aa18.29■□□□□ 0.52
ATG4D-206ENST00000586863 ATP6V0A2Q9Y487 856 aa18.29■□□□□ 0.52
ATG4D-206ENST00000586863 GJA3Q9Y6H8 435 aa18.29■□□□□ 0.52
ATG4D-206ENST00000586863 EIF6P56537 245 aaKnown RBP18.28■□□□□ 0.52
ATG4D-206ENST00000586863 HDGFL1Q5TGJ6 251 aa18.28■□□□□ 0.52
ATG4D-206ENST00000586863 ZNF428Q96B54 188 aa18.28■□□□□ 0.52
ATG4D-206ENST00000586863 CLEC11AQ9Y240 323 aa18.28■□□□□ 0.52
ATG4D-206ENST00000586863 MAP1SQ66K74 1059 aaPredicted RBP18.27■□□□□ 0.52
ATG4D-206ENST00000586863 PNMA8AQ86V59 439 aaPredicted RBP18.27■□□□□ 0.52
ATG4D-206ENST00000586863 PRKRIP1Q9H875 184 aaPredicted RBP18.27■□□□□ 0.52
ATG4D-206ENST00000586863 TRMT112Q9UI30 125 aaKnown RBP18.27■□□□□ 0.52
ATG4D-206ENST00000586863 CNTNAP1P78357 1384 aa18.27■□□□□ 0.51
ATG4D-206ENST00000586863 SH3TC1Q8TE82 1336 aa18.26■□□□□ 0.51
ATG4D-206ENST00000586863 PPIP5K2O43314 1243 aa18.26■□□□□ 0.51
ATG4D-206ENST00000586863 HOXB7P09629 217 aa18.26■□□□□ 0.51
ATG4D-206ENST00000586863 SCNN1DP51172 638 aa18.26■□□□□ 0.51
ATG4D-206ENST00000586863 AOC3Q16853 763 aa18.26■□□□□ 0.51
ATG4D-206ENST00000586863 NIM1KQ8IY84 436 aa18.25■□□□□ 0.51
ATG4D-206ENST00000586863 CNTROBQ8N137 903 aa18.25■□□□□ 0.51
ATG4D-206ENST00000586863 CFAP44Q96MT7 982 aa18.25■□□□□ 0.51
ATG4D-206ENST00000586863 LRRC37AA6NMS7 1700 aa18.25■□□□□ 0.51
ATG4D-206ENST00000586863 TMEM88BA6NKF7 163 aa18.24■□□□□ 0.51
ATG4D-206ENST00000586863 PLBD2Q8NHP8 589 aa18.24■□□□□ 0.51
ATG4D-206ENST00000586863 TMX4Q9H1E5 349 aaPredicted RBP18.24■□□□□ 0.51
ATG4D-206ENST00000586863 MBIPQ9NS73 344 aa18.24■□□□□ 0.51
ATG4D-206ENST00000586863 DUOX1Q9NRD9 1551 aa18.24■□□□□ 0.51
ATG4D-206ENST00000586863 COL4A1P02462 1669 aa18.23■□□□□ 0.51
ATG4D-206ENST00000586863 BBOX1O75936 387 aa18.23■□□□□ 0.51
ATG4D-206ENST00000586863 LMOD1P29536 600 aaPredicted RBP18.23■□□□□ 0.51
ATG4D-206ENST00000586863 EPS15P42566 896 aa18.23■□□□□ 0.51
ATG4D-206ENST00000586863 DUSP27Q5VZP5 1158 aa18.23■□□□□ 0.51
ATG4D-206ENST00000586863 DDX46Q7L014 1031 aaKnown RBP18.23■□□□□ 0.51
ATG4D-206ENST00000586863 RTFDC1Q9BY42 306 aaPredicted RBP18.23■□□□□ 0.51
ATG4D-206ENST00000586863 DBF4Q9UBU7 674 aaPredicted RBP18.23■□□□□ 0.51
ATG4D-206ENST00000586863 ATP5J2-PTCD1G3V325 749 aa18.22■□□□□ 0.51
ATG4D-206ENST00000586863 GRAPQ13588 217 aa18.22■□□□□ 0.51
ATG4D-206ENST00000586863 ANKRD13DQ6ZTN6 518 aa18.22■□□□□ 0.51
ATG4D-206ENST00000586863 SP8Q8IXZ3 490 aa18.22■□□□□ 0.51
ATG4D-206ENST00000586863 GRAPLQ8TC17 118 aaPredicted RBP18.22■□□□□ 0.51
ATG4D-206ENST00000586863 ISCA1Q9BUE6 129 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 99.2 ms