RNA–Protein interactions for RNA: ENST00000580073.1

TRAF4-214, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 449 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-214ENST00000580073 NGEFQ8N5V2 710 aa17.56■□□□□ 0.4
TRAF4-214ENST00000580073 RBM17Q96I25 401 aaKnown RBP17.56■□□□□ 0.4
TRAF4-214ENST00000580073 BABAM1Q9NWV8 329 aa17.56■□□□□ 0.4
TRAF4-214ENST00000580073 MIS18AQ9NYP9 233 aa17.56■□□□□ 0.4
TRAF4-214ENST00000580073 RRP7AQ9Y3A4 280 aaKnown RBP17.56■□□□□ 0.4
TRAF4-214ENST00000580073 FZD9O00144 591 aa17.55■□□□□ 0.4
TRAF4-214ENST00000580073 MYL6BP14649 208 aa17.55■□□□□ 0.4
TRAF4-214ENST00000580073 LMOD1P29536 600 aaPredicted RBP17.55■□□□□ 0.4
TRAF4-214ENST00000580073 EAPPQ56P03 285 aaPredicted RBP17.55■□□□□ 0.4
TRAF4-214ENST00000580073 SYNE4Q8N205 404 aa17.55■□□□□ 0.4
TRAF4-214ENST00000580073 TSPYL4Q9UJ04 414 aa17.55■□□□□ 0.4
TRAF4-214ENST00000580073 TMEM88BA6NKF7 163 aa17.54■□□□□ 0.4
TRAF4-214ENST00000580073 EPHX2P34913 555 aa17.54■□□□□ 0.4
TRAF4-214ENST00000580073 GIGYF2Q6Y7W6 1299 aaKnown RBP17.54■□□□□ 0.4
TRAF4-214ENST00000580073 NUTM1Q86Y26 1132 aa17.54■□□□□ 0.4
TRAF4-214ENST00000580073 ZBTB3Q9H5J0 574 aa17.54■□□□□ 0.4
TRAF4-214ENST00000580073 CLEC11AQ9Y240 323 aa17.54■□□□□ 0.4
TRAF4-214ENST00000580073 DDX60Q8IY21 1712 aaKnown RBP17.54■□□□□ 0.4
TRAF4-214ENST00000580073 PPEF1O14829 653 aaPredicted RBP17.53■□□□□ 0.4
TRAF4-214ENST00000580073 POTEIP0CG38 1075 aa17.53■□□□□ 0.4
TRAF4-214ENST00000580073 POTEJP0CG39 1038 aa17.53■□□□□ 0.4
TRAF4-214ENST00000580073 HOXA10P31260 410 aaPredicted RBP17.53■□□□□ 0.4
TRAF4-214ENST00000580073 AIDAQ96BJ3 306 aa17.53■□□□□ 0.4
TRAF4-214ENST00000580073 CRAMP1Q96RY5 1269 aa17.53■□□□□ 0.4
TRAF4-214ENST00000580073 MKRN1Q9UHC7 482 aaKnown RBP17.53■□□□□ 0.4
TRAF4-214ENST00000580073 UBN2Q6ZU65 1347 aa17.52■□□□□ 0.4
TRAF4-214ENST00000580073 THSD7BQ9C0I4 1608 aa17.52■□□□□ 0.4
TRAF4-214ENST00000580073 GPTP24298 496 aa17.52■□□□□ 0.4
TRAF4-214ENST00000580073 HSP90AB3PQ58FF7 597 aa17.52■□□□□ 0.4
TRAF4-214ENST00000580073 TTLL7Q6ZT98 887 aa17.52■□□□□ 0.4
TRAF4-214ENST00000580073 LRRC37AA6NMS7 1700 aa17.51■□□□□ 0.39
TRAF4-214ENST00000580073 NTSR2O95665 410 aa17.51■□□□□ 0.39
TRAF4-214ENST00000580073 RALBP1Q15311 655 aa17.51■□□□□ 0.39
TRAF4-214ENST00000580073 ZNF34Q8IZ26 560 aa17.51■□□□□ 0.39
TRAF4-214ENST00000580073 SUPT20HQ8NEM7 779 aa17.51■□□□□ 0.39
TRAF4-214ENST00000580073 NLRP3Q96P20 1036 aa17.51■□□□□ 0.39
TRAF4-214ENST00000580073 VPS33BQ9H267 617 aa17.51■□□□□ 0.39
TRAF4-214ENST00000580073 PRKRIP1Q9H875 184 aaPredicted RBP17.51■□□□□ 0.39
TRAF4-214ENST00000580073 LTBP1Q14766 1721 aa17.5■□□□□ 0.39
TRAF4-214ENST00000580073 OLFM4Q6UX06 510 aa17.5■□□□□ 0.39
TRAF4-214ENST00000580073 NIM1KQ8IY84 436 aa17.5■□□□□ 0.39
TRAF4-214ENST00000580073 LARGE2Q8N3Y3 721 aa17.5■□□□□ 0.39
TRAF4-214ENST00000580073 THUMPD2Q9BTF0 503 aaKnown RBP17.5■□□□□ 0.39
TRAF4-214ENST00000580073 SUSD4Q5VX71 490 aa17.49■□□□□ 0.39
TRAF4-214ENST00000580073 UTP14AQ9BVJ6 771 aaKnown RBP17.49■□□□□ 0.39
TRAF4-214ENST00000580073 COL4A5P29400 1685 aa17.48■□□□□ 0.39
TRAF4-214ENST00000580073 RIPK4P57078 832 aa17.48■□□□□ 0.39
TRAF4-214ENST00000580073 GJA3Q9Y6H8 435 aa17.48■□□□□ 0.39
TRAF4-214ENST00000580073 ITGBL1O95965 494 aaPredicted RBP17.47■□□□□ 0.39
TRAF4-214ENST00000580073 CNTROBQ8N137 903 aa17.47■□□□□ 0.39
TRAF4-214ENST00000580073 PPIP5K2O43314 1243 aa17.46■□□□□ 0.39
TRAF4-214ENST00000580073 CAPN15O75808 1086 aa17.46■□□□□ 0.39
TRAF4-214ENST00000580073 EIF2S2P20042 333 aaKnown RBP17.46■□□□□ 0.39
TRAF4-214ENST00000580073 CTCFP49711 727 aaPredicted RBP17.46■□□□□ 0.39
TRAF4-214ENST00000580073 PRDM10Q9NQV6 1147 aa17.46■□□□□ 0.39
TRAF4-214ENST00000580073 MYBBP1AQ9BQG0 1328 aaKnown RBP17.46■□□□□ 0.38
TRAF4-214ENST00000580073 CDHR2Q9BYE9 1310 aa17.46■□□□□ 0.38
TRAF4-214ENST00000580073 RASSF10A6NK89 507 aa17.45■□□□□ 0.38
TRAF4-214ENST00000580073 USP50Q70EL3 339 aaPredicted RBP17.45■□□□□ 0.38
TRAF4-214ENST00000580073 TMC4Q7Z404 712 aa17.45■□□□□ 0.38
TRAF4-214ENST00000580073 ABT1Q9ULW3 272 aaKnown RBP17.45■□□□□ 0.38
TRAF4-214ENST00000580073 ATP6V0A2Q9Y487 856 aa17.45■□□□□ 0.38
TRAF4-214ENST00000580073 TAF1P21675 1872 aa17.45■□□□□ 0.38
TRAF4-214ENST00000580073 TMPOP42166 694 aaKnown RBP17.44■□□□□ 0.38
TRAF4-214ENST00000580073 CCDC184Q52MB2 194 aa17.44■□□□□ 0.38
TRAF4-214ENST00000580073 SLC10A5Q5PT55 438 aa17.44■□□□□ 0.38
TRAF4-214ENST00000580073 MAP1SQ66K74 1059 aaPredicted RBP17.44■□□□□ 0.38
TRAF4-214ENST00000580073 ABCC4O15439 1325 aa17.44■□□□□ 0.38
TRAF4-214ENST00000580073 SH3TC1Q8TE82 1336 aa17.44■□□□□ 0.38
TRAF4-214ENST00000580073 BBOX1O75936 387 aa17.43■□□□□ 0.38
TRAF4-214ENST00000580073 VEGFBP49765 207 aa17.43■□□□□ 0.38
TRAF4-214ENST00000580073 MAP2K1Q02750 393 aaPredicted RBP17.43■□□□□ 0.38
TRAF4-214ENST00000580073 WDR43Q15061 677 aaKnown RBP eCLIP17.43■□□□□ 0.38
TRAF4-214ENST00000580073 DEFB115Q30KQ5 88 aa17.43■□□□□ 0.38
TRAF4-214ENST00000580073 DDX46Q7L014 1031 aaKnown RBP17.43■□□□□ 0.38
TRAF4-214ENST00000580073 HOXB7P09629 217 aa17.42■□□□□ 0.38
TRAF4-214ENST00000580073 ECE1P42892 770 aa17.42■□□□□ 0.38
TRAF4-214ENST00000580073 SCNN1DP51172 638 aa17.42■□□□□ 0.38
TRAF4-214ENST00000580073 DPP8Q6V1X1 898 aaPredicted RBP17.42■□□□□ 0.38
TRAF4-214ENST00000580073 DDX21Q9NR30 783 aaKnown RBP eCLIP17.42■□□□□ 0.38
TRAF4-214ENST00000580073 TCERG1O14776 1098 aaKnown RBP17.41■□□□□ 0.38
TRAF4-214ENST00000580073 FOXN1O15353 648 aa17.41■□□□□ 0.38
TRAF4-214ENST00000580073 PDIA6Q15084 440 aa17.41■□□□□ 0.38
TRAF4-214ENST00000580073 AOC3Q16853 763 aa17.41■□□□□ 0.38
TRAF4-214ENST00000580073 LRP10Q7Z4F1 713 aa17.41■□□□□ 0.38
TRAF4-214ENST00000580073 RTFDC1Q9BY42 306 aaPredicted RBP17.41■□□□□ 0.38
TRAF4-214ENST00000580073 ADARB2Q9NS39 739 aaKnown RBP17.41■□□□□ 0.38
TRAF4-214ENST00000580073 GRAPQ13588 217 aa17.4■□□□□ 0.38
TRAF4-214ENST00000580073 COPS6Q7L5N1 327 aa17.4■□□□□ 0.38
TRAF4-214ENST00000580073 NLRP10Q86W26 655 aa17.4■□□□□ 0.38
TRAF4-214ENST00000580073 SP8Q8IXZ3 490 aa17.4■□□□□ 0.38
TRAF4-214ENST00000580073 GRAPLQ8TC17 118 aaPredicted RBP17.4■□□□□ 0.38
TRAF4-214ENST00000580073 BEGAINQ9BUH8 593 aa17.4■□□□□ 0.38
TRAF4-214ENST00000580073 TRMT112Q9UI30 125 aaKnown RBP17.4■□□□□ 0.38
TRAF4-214ENST00000580073 ZNRF3Q9ULT6 936 aa17.4■□□□□ 0.38
TRAF4-214ENST00000580073 MYH3P11055 1940 aa17.4■□□□□ 0.38
TRAF4-214ENST00000580073 AIMP1Q12904 312 aaKnown RBP17.39■□□□□ 0.37
TRAF4-214ENST00000580073 TCIRG1Q13488 830 aa17.39■□□□□ 0.37
TRAF4-214ENST00000580073 TNIP1Q15025 636 aa17.39■□□□□ 0.37
TRAF4-214ENST00000580073 PROSER3Q2NL68 480 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms