RNA–Protein interactions for RNA: ENST00000568755.1

VPS39-211, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-211ENST00000568755 TAF1P21675 1872 aa13.36□□□□□ -0.27
VPS39-211ENST00000568755 FZD9O00144 591 aa13.35□□□□□ -0.27
VPS39-211ENST00000568755 IARSP41252 1262 aaKnown RBP13.35□□□□□ -0.27
VPS39-211ENST00000568755 NGEFQ8N5V2 710 aa13.35□□□□□ -0.27
VPS39-211ENST00000568755 PSMD1Q99460 953 aa13.35□□□□□ -0.27
VPS39-211ENST00000568755 GTF2E1P29083 439 aaPredicted RBP13.34□□□□□ -0.27
VPS39-211ENST00000568755 KIF6Q6ZMV9 814 aa13.34□□□□□ -0.27
VPS39-211ENST00000568755 LRP10Q7Z4F1 713 aa13.34□□□□□ -0.27
VPS39-211ENST00000568755 SYNE4Q8N205 404 aa13.34□□□□□ -0.27
VPS39-211ENST00000568755 RRP7AQ9Y3A4 280 aaKnown RBP13.34□□□□□ -0.27
VPS39-211ENST00000568755 ERBB4Q15303 1308 aa13.34□□□□□ -0.27
VPS39-211ENST00000568755 CNTNAP1P78357 1384 aa13.33□□□□□ -0.27
VPS39-211ENST00000568755 MYL6BP14649 208 aa13.33□□□□□ -0.28
VPS39-211ENST00000568755 GPTP24298 496 aa13.33□□□□□ -0.28
VPS39-211ENST00000568755 HOXA10P31260 410 aaPredicted RBP13.33□□□□□ -0.28
VPS39-211ENST00000568755 SUSD4Q5VX71 490 aa13.33□□□□□ -0.28
VPS39-211ENST00000568755 ZNF34Q8IZ26 560 aa13.33□□□□□ -0.28
VPS39-211ENST00000568755 ZBTB3Q9H5J0 574 aa13.33□□□□□ -0.28
VPS39-211ENST00000568755 MKRN1Q9UHC7 482 aaKnown RBP13.33□□□□□ -0.28
VPS39-211ENST00000568755 HACL1Q9UJ83 578 aa13.33□□□□□ -0.28
VPS39-211ENST00000568755 MAPK8IP3Q9UPT6 1336 aa13.33□□□□□ -0.28
VPS39-211ENST00000568755 NTSR2O95665 410 aa13.32□□□□□ -0.28
VPS39-211ENST00000568755 ITGBL1O95965 494 aaPredicted RBP13.32□□□□□ -0.28
VPS39-211ENST00000568755 CC2D2BQ6DHV5 1058 aa13.32□□□□□ -0.28
VPS39-211ENST00000568755 GIGYF2Q6Y7W6 1299 aaKnown RBP13.32□□□□□ -0.28
VPS39-211ENST00000568755 SLC51AQ86UW1 340 aa13.32□□□□□ -0.28
VPS39-211ENST00000568755 TNS4Q8IZW8 715 aa13.32□□□□□ -0.28
VPS39-211ENST00000568755 PNNQ9H307 717 aaKnown RBP13.32□□□□□ -0.28
VPS39-211ENST00000568755 RNF123Q5XPI4 1314 aa13.32□□□□□ -0.28
VPS39-211ENST00000568755 EPHX2P34913 555 aa13.31□□□□□ -0.28
VPS39-211ENST00000568755 PDIA6Q15084 440 aa13.31□□□□□ -0.28
VPS39-211ENST00000568755 C3orf67Q6ZVT6 689 aa13.31□□□□□ -0.28
VPS39-211ENST00000568755 GPC2Q8N158 579 aa13.31□□□□□ -0.28
VPS39-211ENST00000568755 TSPYL4Q9UJ04 414 aa13.31□□□□□ -0.28
VPS39-211ENST00000568755 DDX60Q8IY21 1712 aaKnown RBP13.3□□□□□ -0.28
VPS39-211ENST00000568755 EAPPQ56P03 285 aaPredicted RBP13.3□□□□□ -0.28
VPS39-211ENST00000568755 RPGRQ92834 1020 aaKnown RBP13.3□□□□□ -0.28
VPS39-211ENST00000568755 CRAMP1Q96RY5 1269 aa13.3□□□□□ -0.28
VPS39-211ENST00000568755 POLR2AP24928 1970 aaKnown RBP13.29□□□□□ -0.28
VPS39-211ENST00000568755 TMEM88BA6NKF7 163 aa13.29□□□□□ -0.28
VPS39-211ENST00000568755 PPEF1O14829 653 aaPredicted RBP13.29□□□□□ -0.28
VPS39-211ENST00000568755 PROSER3Q2NL68 480 aa13.29□□□□□ -0.28
VPS39-211ENST00000568755 GRIPAP1Q4V328 841 aa13.29□□□□□ -0.28
VPS39-211ENST00000568755 PARP10Q53GL7 1025 aa13.29□□□□□ -0.28
VPS39-211ENST00000568755 PNMA8AQ86V59 439 aaPredicted RBP13.29□□□□□ -0.28
VPS39-211ENST00000568755 JDP2Q8WYK2 163 aa13.29□□□□□ -0.28
VPS39-211ENST00000568755 RBM17Q96I25 401 aaKnown RBP13.29□□□□□ -0.28
VPS39-211ENST00000568755 BABAM1Q9NWV8 329 aa13.29□□□□□ -0.28
VPS39-211ENST00000568755 THSD7BQ9C0I4 1608 aa13.28□□□□□ -0.28
VPS39-211ENST00000568755 LRRC37AA6NMS7 1700 aa13.28□□□□□ -0.28
VPS39-211ENST00000568755 RIPK4P57078 832 aa13.28□□□□□ -0.28
VPS39-211ENST00000568755 PPP1R42Q7Z4L9 355 aa13.28□□□□□ -0.28
VPS39-211ENST00000568755 ANXA1P04083 346 aa13.27□□□□□ -0.29
VPS39-211ENST00000568755 EIF2S2P20042 333 aaKnown RBP13.27□□□□□ -0.29
VPS39-211ENST00000568755 TMPOP42166 694 aaKnown RBP13.27□□□□□ -0.29
VPS39-211ENST00000568755 VEGFBP49765 207 aa13.27□□□□□ -0.29
VPS39-211ENST00000568755 SCNN1DP51172 638 aa13.27□□□□□ -0.29
VPS39-211ENST00000568755 EIF6P56537 245 aaKnown RBP13.27□□□□□ -0.29
VPS39-211ENST00000568755 RALBP1Q15311 655 aa13.27□□□□□ -0.29
VPS39-211ENST00000568755 SLC10A5Q5PT55 438 aa13.27□□□□□ -0.29
VPS39-211ENST00000568755 MAP1SQ66K74 1059 aaPredicted RBP13.27□□□□□ -0.29
VPS39-211ENST00000568755 CNTROBQ8N137 903 aa13.27□□□□□ -0.29
VPS39-211ENST00000568755 CLEC11AQ9Y240 323 aa13.27□□□□□ -0.29
VPS39-211ENST00000568755 FOXN1O15353 648 aa13.26□□□□□ -0.29
VPS39-211ENST00000568755 ABCC4O15439 1325 aa13.26□□□□□ -0.29
VPS39-211ENST00000568755 CAPN15O75808 1086 aa13.26□□□□□ -0.29
VPS39-211ENST00000568755 LARGE2Q8N3Y3 721 aa13.26□□□□□ -0.29
VPS39-211ENST00000568755 UTP14AQ9BVJ6 771 aaKnown RBP13.26□□□□□ -0.29
VPS39-211ENST00000568755 GJA3Q9Y6H8 435 aa13.26□□□□□ -0.29
VPS39-211ENST00000568755 DUOX1Q9NRD9 1551 aa13.25□□□□□ -0.29
VPS39-211ENST00000568755 RASSF10A6NK89 507 aa13.25□□□□□ -0.29
VPS39-211ENST00000568755 LMOD3Q0VAK6 560 aa13.25□□□□□ -0.29
VPS39-211ENST00000568755 NLRP3Q96P20 1036 aa13.25□□□□□ -0.29
VPS39-211ENST00000568755 SPINK5Q9NQ38 1064 aaPredicted RBP13.25□□□□□ -0.29
VPS39-211ENST00000568755 ATP6V0A2Q9Y487 856 aa13.25□□□□□ -0.29
VPS39-211ENST00000568755 TCERG1O14776 1098 aaKnown RBP13.24□□□□□ -0.29
VPS39-211ENST00000568755 EPS15P42566 896 aa13.24□□□□□ -0.29
VPS39-211ENST00000568755 COPS6Q7L5N1 327 aa13.24□□□□□ -0.29
VPS39-211ENST00000568755 NLRP10Q86W26 655 aa13.24□□□□□ -0.29
VPS39-211ENST00000568755 XAGE3Q8WTP9 111 aa13.24□□□□□ -0.29
VPS39-211ENST00000568755 RTFDC1Q9BY42 306 aaPredicted RBP13.24□□□□□ -0.29
VPS39-211ENST00000568755 VPS33BQ9H267 617 aa13.24□□□□□ -0.29
VPS39-211ENST00000568755 CHL1O00533 1208 aa13.23□□□□□ -0.29
VPS39-211ENST00000568755 PPIP5K2O43314 1243 aa13.23□□□□□ -0.29
VPS39-211ENST00000568755 LMOD1P29536 600 aaPredicted RBP13.23□□□□□ -0.29
VPS39-211ENST00000568755 AOC3Q16853 763 aa13.23□□□□□ -0.29
VPS39-211ENST00000568755 KRT24Q2M2I5 525 aa13.23□□□□□ -0.29
VPS39-211ENST00000568755 HSP90AB3PQ58FF7 597 aa13.23□□□□□ -0.29
VPS39-211ENST00000568755 NIM1KQ8IY84 436 aa13.23□□□□□ -0.29
VPS39-211ENST00000568755 PRDM10Q9NQV6 1147 aa13.23□□□□□ -0.29
VPS39-211ENST00000568755 DDX21Q9NR30 783 aaKnown RBP eCLIP13.23□□□□□ -0.29
VPS39-211ENST00000568755 WBP1LQ9NX94 342 aa13.23□□□□□ -0.29
VPS39-211ENST00000568755 COL4A1P02462 1669 aa13.22□□□□□ -0.29
VPS39-211ENST00000568755 MYBBP1AQ9BQG0 1328 aaKnown RBP13.22□□□□□ -0.29
VPS39-211ENST00000568755 AIMP1Q12904 312 aaKnown RBP13.22□□□□□ -0.29
VPS39-211ENST00000568755 TCIRG1Q13488 830 aa13.22□□□□□ -0.29
VPS39-211ENST00000568755 USP50Q70EL3 339 aaPredicted RBP13.22□□□□□ -0.29
VPS39-211ENST00000568755 CCDC146Q8IYE0 955 aa13.22□□□□□ -0.29
VPS39-211ENST00000568755 NECTIN2Q92692 538 aa13.22□□□□□ -0.29
VPS39-211ENST00000568755 TRIM35Q9UPQ4 493 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms