RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 TAF1DQ9H5J8 278 aaPredicted RBP19.63■□□□□ 0.73
CLN3-236ENST00000568558 BABAM1Q9NWV8 329 aa19.63■□□□□ 0.73
CLN3-236ENST00000568558 FZD9O00144 591 aa19.62■□□□□ 0.73
CLN3-236ENST00000568558 TMPOP42166 694 aaKnown RBP19.62■□□□□ 0.73
CLN3-236ENST00000568558 CC2D2BQ6DHV5 1058 aa19.62■□□□□ 0.73
CLN3-236ENST00000568558 LDHDQ86WU2 507 aa19.62■□□□□ 0.73
CLN3-236ENST00000568558 EIF2S2P20042 333 aaKnown RBP19.61■□□□□ 0.73
CLN3-236ENST00000568558 LMOD3Q0VAK6 560 aa19.61■□□□□ 0.73
CLN3-236ENST00000568558 CREBZFQ9NS37 354 aa19.61■□□□□ 0.73
CLN3-236ENST00000568558 PASKQ96RG2 1323 aa19.6■□□□□ 0.73
CLN3-236ENST00000568558 MYBBP1AQ9BQG0 1328 aaKnown RBP19.6■□□□□ 0.73
CLN3-236ENST00000568558 PROSER3Q2NL68 480 aa19.6■□□□□ 0.73
CLN3-236ENST00000568558 PARP10Q53GL7 1025 aa19.6■□□□□ 0.73
CLN3-236ENST00000568558 COL13A1Q5TAT6 717 aaPredicted RBP19.6■□□□□ 0.73
CLN3-236ENST00000568558 PPP1R42Q7Z4L9 355 aa19.6■□□□□ 0.73
CLN3-236ENST00000568558 HACL1Q9UJ83 578 aa19.6■□□□□ 0.73
CLN3-236ENST00000568558 LTBP1Q14766 1721 aa19.59■□□□□ 0.73
CLN3-236ENST00000568558 ANXA1P04083 346 aa19.59■□□□□ 0.73
CLN3-236ENST00000568558 C3orf67Q6ZVT6 689 aa19.59■□□□□ 0.73
CLN3-236ENST00000568558 RBM17Q96I25 401 aaKnown RBP19.59■□□□□ 0.73
CLN3-236ENST00000568558 CRAMP1Q96RY5 1269 aa19.59■□□□□ 0.73
CLN3-236ENST00000568558 RNF123Q5XPI4 1314 aa19.58■□□□□ 0.73
CLN3-236ENST00000568558 HSPA1AP0DMV8 641 aaKnown RBP19.58■□□□□ 0.72
CLN3-236ENST00000568558 HSPA1BP0DMV9 641 aaKnown RBP19.58■□□□□ 0.72
CLN3-236ENST00000568558 GPC2Q8N158 579 aa19.58■□□□□ 0.72
CLN3-236ENST00000568558 JDP2Q8WYK2 163 aa19.58■□□□□ 0.72
CLN3-236ENST00000568558 TAF1P21675 1872 aa19.57■□□□□ 0.72
CLN3-236ENST00000568558 PPEF1O14829 653 aaPredicted RBP19.57■□□□□ 0.72
CLN3-236ENST00000568558 EPHX2P34913 555 aa19.57■□□□□ 0.72
CLN3-236ENST00000568558 DDX10Q13206 875 aaKnown RBP19.57■□□□□ 0.72
CLN3-236ENST00000568558 GRIPAP1Q4V328 841 aa19.57■□□□□ 0.72
CLN3-236ENST00000568558 EAPPQ56P03 285 aaPredicted RBP19.57■□□□□ 0.72
CLN3-236ENST00000568558 SLC51AQ86UW1 340 aa19.57■□□□□ 0.72
CLN3-236ENST00000568558 DDX60Q8IY21 1712 aaKnown RBP19.56■□□□□ 0.72
CLN3-236ENST00000568558 SLC10A5Q5PT55 438 aa19.56■□□□□ 0.72
CLN3-236ENST00000568558 CCDC146Q8IYE0 955 aa19.56■□□□□ 0.72
CLN3-236ENST00000568558 NLRP3Q96P20 1036 aa19.56■□□□□ 0.72
CLN3-236ENST00000568558 UTP14AQ9BVJ6 771 aaKnown RBP19.56■□□□□ 0.72
CLN3-236ENST00000568558 MKRN1Q9UHC7 482 aaKnown RBP19.56■□□□□ 0.72
CLN3-236ENST00000568558 ITGBL1O95965 494 aaPredicted RBP19.55■□□□□ 0.72
CLN3-236ENST00000568558 NEUROD2Q15784 382 aa19.55■□□□□ 0.72
CLN3-236ENST00000568558 PNMA8AQ86V59 439 aaPredicted RBP19.55■□□□□ 0.72
CLN3-236ENST00000568558 CNTNAP1P78357 1384 aa19.55■□□□□ 0.72
CLN3-236ENST00000568558 TCERG1O14776 1098 aaKnown RBP19.54■□□□□ 0.72
CLN3-236ENST00000568558 EIF6P56537 245 aaKnown RBP19.54■□□□□ 0.72
CLN3-236ENST00000568558 HSP90AB3PQ58FF7 597 aa19.54■□□□□ 0.72
CLN3-236ENST00000568558 COPS6Q7L5N1 327 aa19.54■□□□□ 0.72
CLN3-236ENST00000568558 XAGE3Q8WTP9 111 aa19.54■□□□□ 0.72
CLN3-236ENST00000568558 NECTIN2Q92692 538 aa19.54■□□□□ 0.72
CLN3-236ENST00000568558 CLEC11AQ9Y240 323 aa19.54■□□□□ 0.72
CLN3-236ENST00000568558 CHL1O00533 1208 aa19.53■□□□□ 0.72
CLN3-236ENST00000568558 AIMP1Q12904 312 aaKnown RBP19.53■□□□□ 0.72
CLN3-236ENST00000568558 KRT24Q2M2I5 525 aa19.53■□□□□ 0.72
CLN3-236ENST00000568558 LARGE2Q8N3Y3 721 aa19.53■□□□□ 0.72
CLN3-236ENST00000568558 RUNDC1Q96C34 613 aa19.53■□□□□ 0.72
CLN3-236ENST00000568558 DDX21Q9NR30 783 aaKnown RBP eCLIP19.53■□□□□ 0.72
CLN3-236ENST00000568558 TRIM35Q9UPQ4 493 aa19.53■□□□□ 0.72
CLN3-236ENST00000568558 GJA3Q9Y6H8 435 aa19.53■□□□□ 0.72
CLN3-236ENST00000568558 TRPM7Q96QT4 1865 aa19.53■□□□□ 0.72
CLN3-236ENST00000568558 LRRC37AA6NMS7 1700 aa19.53■□□□□ 0.72
CLN3-236ENST00000568558 ABCC4O15439 1325 aa19.52■□□□□ 0.72
CLN3-236ENST00000568558 NLRP10Q86W26 655 aa19.52■□□□□ 0.72
CLN3-236ENST00000568558 ATP6V0A2Q9Y487 856 aa19.52■□□□□ 0.72
CLN3-236ENST00000568558 TMEM88BA6NKF7 163 aa19.51■□□□□ 0.71
CLN3-236ENST00000568558 WDR43Q15061 677 aaKnown RBP eCLIP19.51■□□□□ 0.71
CLN3-236ENST00000568558 SCNN1DP51172 638 aa19.5■□□□□ 0.71
CLN3-236ENST00000568558 TCIRG1Q13488 830 aa19.5■□□□□ 0.71
CLN3-236ENST00000568558 MAP1SQ66K74 1059 aaPredicted RBP19.5■□□□□ 0.71
CLN3-236ENST00000568558 TNS4Q8IZW8 715 aa19.5■□□□□ 0.71
CLN3-236ENST00000568558 CNTROBQ8N137 903 aa19.5■□□□□ 0.71
CLN3-236ENST00000568558 TMX4Q9H1E5 349 aaPredicted RBP19.5■□□□□ 0.71
CLN3-236ENST00000568558 CHPF2Q9P2E5 772 aa19.5■□□□□ 0.71
CLN3-236ENST00000568558 LAS1LQ9Y4W2 734 aaKnown RBP19.5■□□□□ 0.71
CLN3-236ENST00000568558 PPIP5K2O43314 1243 aa19.49■□□□□ 0.71
CLN3-236ENST00000568558 HCLS1P14317 486 aaPredicted RBP19.49■□□□□ 0.71
CLN3-236ENST00000568558 LMOD1P29536 600 aaPredicted RBP19.49■□□□□ 0.71
CLN3-236ENST00000568558 NIM1KQ8IY84 436 aa19.49■□□□□ 0.71
CLN3-236ENST00000568558 VPS33BQ9H267 617 aa19.49■□□□□ 0.71
CLN3-236ENST00000568558 TRMT112Q9UI30 125 aaKnown RBP19.49■□□□□ 0.71
CLN3-236ENST00000568558 SH3TC1Q8TE82 1336 aa19.49■□□□□ 0.71
CLN3-236ENST00000568558 HOXB7P09629 217 aa19.48■□□□□ 0.71
CLN3-236ENST00000568558 AOC3Q16853 763 aa19.48■□□□□ 0.71
CLN3-236ENST00000568558 ADAMTS8Q9UP79 889 aa19.48■□□□□ 0.71
CLN3-236ENST00000568558 DUOX1Q9NRD9 1551 aa19.48■□□□□ 0.71
CLN3-236ENST00000568558 BBOX1O75936 387 aa19.47■□□□□ 0.71
CLN3-236ENST00000568558 HDGFL1Q5TGJ6 251 aa19.47■□□□□ 0.71
CLN3-236ENST00000568558 SP8Q8IXZ3 490 aa19.47■□□□□ 0.71
CLN3-236ENST00000568558 SUPT20HQ8NEM7 779 aa19.47■□□□□ 0.71
CLN3-236ENST00000568558 RTFDC1Q9BY42 306 aaPredicted RBP19.47■□□□□ 0.71
CLN3-236ENST00000568558 EPS15P42566 896 aa19.46■□□□□ 0.71
CLN3-236ENST00000568558 VEGFBP49765 207 aa19.46■□□□□ 0.71
CLN3-236ENST00000568558 DDX46Q7L014 1031 aaKnown RBP19.46■□□□□ 0.71
CLN3-236ENST00000568558 GRAPQ13588 217 aa19.45■□□□□ 0.7
CLN3-236ENST00000568558 DPP8Q6V1X1 898 aaPredicted RBP19.45■□□□□ 0.7
CLN3-236ENST00000568558 PLBD2Q8NHP8 589 aa19.45■□□□□ 0.7
CLN3-236ENST00000568558 GRAPLQ8TC17 118 aaPredicted RBP19.45■□□□□ 0.7
CLN3-236ENST00000568558 CFAP44Q96MT7 982 aa19.45■□□□□ 0.7
CLN3-236ENST00000568558 THSD7BQ9C0I4 1608 aa19.44■□□□□ 0.7
CLN3-236ENST00000568558 RASSF10A6NK89 507 aa19.44■□□□□ 0.7
CLN3-236ENST00000568558 USP50Q70EL3 339 aaPredicted RBP19.44■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms