RNA–Protein interactions for RNA: ENST00000565173.1

CAPN3-213, Transcript of calpain 3, humanhuman

TSL 4

Gene CAPN3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-213ENST00000565173 TAF1DQ9H5J8 278 aaPredicted RBP11.3□□□□□ -0.6
CAPN3-213ENST00000565173 IQCA1LA6NCM1 817 aa11.29□□□□□ -0.6
CAPN3-213ENST00000565173 ANXA1P04083 346 aa11.29□□□□□ -0.6
CAPN3-213ENST00000565173 EIF2S2P20042 333 aaKnown RBP11.29□□□□□ -0.6
CAPN3-213ENST00000565173 DDX10Q13206 875 aaKnown RBP11.29□□□□□ -0.6
CAPN3-213ENST00000565173 SLC10A5Q5PT55 438 aa11.29□□□□□ -0.6
CAPN3-213ENST00000565173 CRAMP1Q96RY5 1269 aa11.29□□□□□ -0.6
CAPN3-213ENST00000565173 SCN4AP35499 1836 aa11.28□□□□□ -0.6
CAPN3-213ENST00000565173 COL4A5P29400 1685 aa11.28□□□□□ -0.6
CAPN3-213ENST00000565173 CHL1O00533 1208 aa11.28□□□□□ -0.6
CAPN3-213ENST00000565173 ITGBL1O95965 494 aaPredicted RBP11.28□□□□□ -0.6
CAPN3-213ENST00000565173 CC2D2BQ6DHV5 1058 aa11.28□□□□□ -0.6
CAPN3-213ENST00000565173 LDHDQ86WU2 507 aa11.28□□□□□ -0.6
CAPN3-213ENST00000565173 CCDC146Q8IYE0 955 aa11.28□□□□□ -0.6
CAPN3-213ENST00000565173 RPGRQ92834 1020 aaKnown RBP11.28□□□□□ -0.6
CAPN3-213ENST00000565173 CREBZFQ9NS37 354 aa11.28□□□□□ -0.6
CAPN3-213ENST00000565173 TRIM35Q9UPQ4 493 aa11.28□□□□□ -0.6
CAPN3-213ENST00000565173 PASKQ96RG2 1323 aa11.28□□□□□ -0.6
CAPN3-213ENST00000565173 LMOD3Q0VAK6 560 aa11.27□□□□□ -0.61
CAPN3-213ENST00000565173 KRT24Q2M2I5 525 aa11.27□□□□□ -0.61
CAPN3-213ENST00000565173 PARP10Q53GL7 1025 aa11.27□□□□□ -0.61
CAPN3-213ENST00000565173 COPS6Q7L5N1 327 aa11.27□□□□□ -0.61
CAPN3-213ENST00000565173 PPP1R42Q7Z4L9 355 aa11.27□□□□□ -0.61
CAPN3-213ENST00000565173 GPC2Q8N158 579 aa11.27□□□□□ -0.61
CAPN3-213ENST00000565173 RBM17Q96I25 401 aaKnown RBP11.27□□□□□ -0.61
CAPN3-213ENST00000565173 HACL1Q9UJ83 578 aa11.27□□□□□ -0.61
CAPN3-213ENST00000565173 MYBBP1AQ9BQG0 1328 aaKnown RBP11.27□□□□□ -0.61
CAPN3-213ENST00000565173 ADAMTSL1Q8N6G6 1762 aa11.26□□□□□ -0.61
CAPN3-213ENST00000565173 PPEF1O14829 653 aaPredicted RBP11.26□□□□□ -0.61
CAPN3-213ENST00000565173 EPHX2P34913 555 aa11.26□□□□□ -0.61
CAPN3-213ENST00000565173 GRIPAP1Q4V328 841 aa11.26□□□□□ -0.61
CAPN3-213ENST00000565173 XAGE3Q8WTP9 111 aa11.26□□□□□ -0.61
CAPN3-213ENST00000565173 NECTIN2Q92692 538 aa11.26□□□□□ -0.61
CAPN3-213ENST00000565173 UTP14AQ9BVJ6 771 aaKnown RBP11.26□□□□□ -0.61
CAPN3-213ENST00000565173 RNF123Q5XPI4 1314 aa11.26□□□□□ -0.61
CAPN3-213ENST00000565173 HSPA1AP0DMV8 641 aaKnown RBP11.25□□□□□ -0.61
CAPN3-213ENST00000565173 HSPA1BP0DMV9 641 aaKnown RBP11.25□□□□□ -0.61
CAPN3-213ENST00000565173 TCIRG1Q13488 830 aa11.25□□□□□ -0.61
CAPN3-213ENST00000565173 NEUROD2Q15784 382 aa11.25□□□□□ -0.61
CAPN3-213ENST00000565173 NLRP10Q86W26 655 aa11.25□□□□□ -0.61
CAPN3-213ENST00000565173 JDP2Q8WYK2 163 aa11.25□□□□□ -0.61
CAPN3-213ENST00000565173 RUNDC1Q96C34 613 aa11.25□□□□□ -0.61
CAPN3-213ENST00000565173 NLRP3Q96P20 1036 aa11.25□□□□□ -0.61
CAPN3-213ENST00000565173 DDX21Q9NR30 783 aaKnown RBP eCLIP11.25□□□□□ -0.61
CAPN3-213ENST00000565173 ADAMTS8Q9UP79 889 aa11.25□□□□□ -0.61
CAPN3-213ENST00000565173 ATP6V0A2Q9Y487 856 aa11.25□□□□□ -0.61
CAPN3-213ENST00000565173 TCERG1O14776 1098 aaKnown RBP11.24□□□□□ -0.61
CAPN3-213ENST00000565173 AIMP1Q12904 312 aaKnown RBP11.24□□□□□ -0.61
CAPN3-213ENST00000565173 EAPPQ56P03 285 aaPredicted RBP11.24□□□□□ -0.61
CAPN3-213ENST00000565173 PNMA8AQ86V59 439 aaPredicted RBP11.24□□□□□ -0.61
CAPN3-213ENST00000565173 MKRN1Q9UHC7 482 aaKnown RBP11.24□□□□□ -0.61
CAPN3-213ENST00000565173 LTBP1Q14766 1721 aa11.23□□□□□ -0.61
CAPN3-213ENST00000565173 HCLS1P14317 486 aaPredicted RBP11.23□□□□□ -0.61
CAPN3-213ENST00000565173 SCNN1DP51172 638 aa11.23□□□□□ -0.61
CAPN3-213ENST00000565173 MAP1SQ66K74 1059 aaPredicted RBP11.23□□□□□ -0.61
CAPN3-213ENST00000565173 CNTROBQ8N137 903 aa11.23□□□□□ -0.61
CAPN3-213ENST00000565173 LARGE2Q8N3Y3 721 aa11.23□□□□□ -0.61
CAPN3-213ENST00000565173 CHPF2Q9P2E5 772 aa11.23□□□□□ -0.61
CAPN3-213ENST00000565173 GJA3Q9Y6H8 435 aa11.23□□□□□ -0.61
CAPN3-213ENST00000565173 ABCC4O15439 1325 aa11.23□□□□□ -0.61
CAPN3-213ENST00000565173 CNTNAP1P78357 1384 aa11.23□□□□□ -0.61
CAPN3-213ENST00000565173 TMEM88BA6NKF7 163 aa11.22□□□□□ -0.61
CAPN3-213ENST00000565173 BBOX1O75936 387 aa11.22□□□□□ -0.61
CAPN3-213ENST00000565173 EPS15P42566 896 aa11.22□□□□□ -0.61
CAPN3-213ENST00000565173 EIF6P56537 245 aaKnown RBP11.22□□□□□ -0.61
CAPN3-213ENST00000565173 HSP90AB3PQ58FF7 597 aa11.22□□□□□ -0.61
CAPN3-213ENST00000565173 RTFDC1Q9BY42 306 aaPredicted RBP11.22□□□□□ -0.61
CAPN3-213ENST00000565173 VPS33BQ9H267 617 aa11.22□□□□□ -0.61
CAPN3-213ENST00000565173 TRMT112Q9UI30 125 aaKnown RBP11.22□□□□□ -0.61
CAPN3-213ENST00000565173 CLEC11AQ9Y240 323 aa11.22□□□□□ -0.61
CAPN3-213ENST00000565173 LAS1LQ9Y4W2 734 aaKnown RBP11.22□□□□□ -0.61
CAPN3-213ENST00000565173 LAMB2P55268 1798 aa11.21□□□□□ -0.61
CAPN3-213ENST00000565173 ANKRD36CQ5JPF3 1778 aa11.21□□□□□ -0.61
CAPN3-213ENST00000565173 HOXB7P09629 217 aa11.21□□□□□ -0.61
CAPN3-213ENST00000565173 VEGFBP49765 207 aa11.21□□□□□ -0.61
CAPN3-213ENST00000565173 WDR43Q15061 677 aaKnown RBP eCLIP11.21□□□□□ -0.61
CAPN3-213ENST00000565173 AOC3Q16853 763 aa11.21□□□□□ -0.61
CAPN3-213ENST00000565173 SP8Q8IXZ3 490 aa11.21□□□□□ -0.61
CAPN3-213ENST00000565173 ZNF428Q96B54 188 aa11.21□□□□□ -0.61
CAPN3-213ENST00000565173 CFAP44Q96MT7 982 aa11.21□□□□□ -0.61
CAPN3-213ENST00000565173 PRKRIP1Q9H875 184 aaPredicted RBP11.21□□□□□ -0.61
CAPN3-213ENST00000565173 SH3TC1Q8TE82 1336 aa11.2□□□□□ -0.62
CAPN3-213ENST00000565173 PPIP5K2O43314 1243 aa11.2□□□□□ -0.62
CAPN3-213ENST00000565173 ZNF853P0CG23 659 aa11.2□□□□□ -0.62
CAPN3-213ENST00000565173 CXCL9Q07325 125 aa11.2□□□□□ -0.62
CAPN3-213ENST00000565173 HDGFL1Q5TGJ6 251 aa11.2□□□□□ -0.62
CAPN3-213ENST00000565173 DUSP27Q5VZP5 1158 aa11.2□□□□□ -0.62
CAPN3-213ENST00000565173 ANKRD13DQ6ZTN6 518 aa11.2□□□□□ -0.62
CAPN3-213ENST00000565173 PLBD2Q8NHP8 589 aa11.2□□□□□ -0.62
CAPN3-213ENST00000565173 ISCA1Q9BUE6 129 aa11.2□□□□□ -0.62
CAPN3-213ENST00000565173 RASSF10A6NK89 507 aa11.19□□□□□ -0.62
CAPN3-213ENST00000565173 FMR1Q06787 632 aaKnown RBP eCLIP11.19□□□□□ -0.62
CAPN3-213ENST00000565173 USP50Q70EL3 339 aaPredicted RBP11.19□□□□□ -0.62
CAPN3-213ENST00000565173 DDX46Q7L014 1031 aaKnown RBP11.19□□□□□ -0.62
CAPN3-213ENST00000565173 NIM1KQ8IY84 436 aa11.19□□□□□ -0.62
CAPN3-213ENST00000565173 TNS4Q8IZW8 715 aa11.19□□□□□ -0.62
CAPN3-213ENST00000565173 MBIPQ9NS73 344 aa11.19□□□□□ -0.62
CAPN3-213ENST00000565173 GPRC5DQ9NZD1 345 aa11.19□□□□□ -0.62
CAPN3-213ENST00000565173 DBF4Q9UBU7 674 aaPredicted RBP11.19□□□□□ -0.62
CAPN3-213ENST00000565173 ZNRF3Q9ULT6 936 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms