RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 CLEC11AQ9Y240 323 aa22.19■■□□□ 1.14
CLN3-211ENST00000564091 ERBB4Q15303 1308 aa22.19■■□□□ 1.14
CLN3-211ENST00000564091 RNF123Q5XPI4 1314 aa22.19■■□□□ 1.14
CLN3-211ENST00000564091 PASKQ96RG2 1323 aa22.19■■□□□ 1.14
CLN3-211ENST00000564091 CC2D2BQ6DHV5 1058 aa22.18■■□□□ 1.14
CLN3-211ENST00000564091 TNS4Q8IZW8 715 aa22.18■■□□□ 1.14
CLN3-211ENST00000564091 JDP2Q8WYK2 163 aa22.18■■□□□ 1.14
CLN3-211ENST00000564091 SNED1Q8TER0 1413 aa22.17■■□□□ 1.14
CLN3-211ENST00000564091 ITGBL1O95965 494 aaPredicted RBP22.17■■□□□ 1.14
CLN3-211ENST00000564091 RBM17Q96I25 401 aaKnown RBP22.17■■□□□ 1.14
CLN3-211ENST00000564091 IBTKQ9P2D0 1353 aaPredicted RBP22.16■■□□□ 1.14
CLN3-211ENST00000564091 TMPOP42166 694 aaKnown RBP22.16■■□□□ 1.14
CLN3-211ENST00000564091 RALBP1Q15311 655 aa22.16■■□□□ 1.14
CLN3-211ENST00000564091 PPP1R42Q7Z4L9 355 aa22.16■■□□□ 1.14
CLN3-211ENST00000564091 NECTIN2Q92692 538 aa22.16■■□□□ 1.14
CLN3-211ENST00000564091 CRAMP1Q96RY5 1269 aa22.16■■□□□ 1.14
CLN3-211ENST00000564091 GJA3Q9Y6H8 435 aa22.16■■□□□ 1.14
CLN3-211ENST00000564091 PPEF1O14829 653 aaPredicted RBP22.15■■□□□ 1.14
CLN3-211ENST00000564091 CAPN15O75808 1086 aa22.15■■□□□ 1.14
CLN3-211ENST00000564091 PARP10Q53GL7 1025 aa22.15■■□□□ 1.14
CLN3-211ENST00000564091 GPC2Q8N158 579 aa22.15■■□□□ 1.14
CLN3-211ENST00000564091 DICER1Q9UPY3 1922 aaKnown RBP22.14■■□□□ 1.14
CLN3-211ENST00000564091 EIF6P56537 245 aaKnown RBP22.14■■□□□ 1.13
CLN3-211ENST00000564091 NEUROD2Q15784 382 aa22.14■■□□□ 1.13
CLN3-211ENST00000564091 MAP1SQ66K74 1059 aaPredicted RBP22.14■■□□□ 1.13
CLN3-211ENST00000564091 LARGE2Q8N3Y3 721 aa22.14■■□□□ 1.13
CLN3-211ENST00000564091 NLRP3Q96P20 1036 aa22.14■■□□□ 1.13
CLN3-211ENST00000564091 UTP14AQ9BVJ6 771 aaKnown RBP22.14■■□□□ 1.13
CLN3-211ENST00000564091 TMEM88BA6NKF7 163 aa22.13■■□□□ 1.13
CLN3-211ENST00000564091 PNMA8AQ86V59 439 aaPredicted RBP22.13■■□□□ 1.13
CLN3-211ENST00000564091 CCDC146Q8IYE0 955 aa22.13■■□□□ 1.13
CLN3-211ENST00000564091 BABAM1Q9NWV8 329 aa22.13■■□□□ 1.13
CLN3-211ENST00000564091 CNTNAP1P78357 1384 aa22.12■■□□□ 1.13
CLN3-211ENST00000564091 KDM3BQ7LBC6 1761 aa22.12■■□□□ 1.13
CLN3-211ENST00000564091 ARFGEF2Q9Y6D5 1785 aa22.12■■□□□ 1.13
CLN3-211ENST00000564091 AIMP1Q12904 312 aaKnown RBP22.12■■□□□ 1.13
CLN3-211ENST00000564091 SLC10A5Q5PT55 438 aa22.12■■□□□ 1.13
CLN3-211ENST00000564091 COPS6Q7L5N1 327 aa22.12■■□□□ 1.13
CLN3-211ENST00000564091 CNTROBQ8N137 903 aa22.12■■□□□ 1.13
CLN3-211ENST00000564091 RIC1Q4ADV7 1423 aa22.12■■□□□ 1.13
CLN3-211ENST00000564091 CACNA1SQ13698 1873 aa22.11■■□□□ 1.13
CLN3-211ENST00000564091 LMOD3Q0VAK6 560 aa22.11■■□□□ 1.13
CLN3-211ENST00000564091 DDX10Q13206 875 aaKnown RBP22.11■■□□□ 1.13
CLN3-211ENST00000564091 KRT24Q2M2I5 525 aa22.11■■□□□ 1.13
CLN3-211ENST00000564091 GRIPAP1Q4V328 841 aa22.11■■□□□ 1.13
CLN3-211ENST00000564091 XAGE3Q8WTP9 111 aa22.11■■□□□ 1.13
CLN3-211ENST00000564091 LAMB4A4D0S4 1761 aa22.11■■□□□ 1.13
CLN3-211ENST00000564091 COL4A5P29400 1685 aa22.1■■□□□ 1.13
CLN3-211ENST00000564091 EPS15P42566 896 aa22.09■■□□□ 1.13
CLN3-211ENST00000564091 VEGFBP49765 207 aa22.09■■□□□ 1.13
CLN3-211ENST00000564091 ATP6V0A2Q9Y487 856 aa22.09■■□□□ 1.13
CLN3-211ENST00000564091 LAS1LQ9Y4W2 734 aaKnown RBP22.09■■□□□ 1.13
CLN3-211ENST00000564091 PPIP5K2O43314 1243 aa22.08■■□□□ 1.13
CLN3-211ENST00000564091 HCLS1P14317 486 aaPredicted RBP22.08■■□□□ 1.13
CLN3-211ENST00000564091 LMOD1P29536 600 aaPredicted RBP22.08■■□□□ 1.13
CLN3-211ENST00000564091 SCNN1DP51172 638 aa22.08■■□□□ 1.13
CLN3-211ENST00000564091 NLRP10Q86W26 655 aa22.08■■□□□ 1.13
CLN3-211ENST00000564091 NIM1KQ8IY84 436 aa22.08■■□□□ 1.13
CLN3-211ENST00000564091 ZNF428Q96B54 188 aa22.08■■□□□ 1.13
CLN3-211ENST00000564091 TMX4Q9H1E5 349 aaPredicted RBP22.08■■□□□ 1.13
CLN3-211ENST00000564091 ABCC4O15439 1325 aa22.07■■□□□ 1.12
CLN3-211ENST00000564091 CHL1O00533 1208 aa22.07■■□□□ 1.12
CLN3-211ENST00000564091 AOC3Q16853 763 aa22.07■■□□□ 1.12
CLN3-211ENST00000564091 HSP90AB3PQ58FF7 597 aa22.07■■□□□ 1.12
CLN3-211ENST00000564091 DLG5Q8TDM6 1919 aa22.07■■□□□ 1.12
CLN3-211ENST00000564091 MYBBP1AQ9BQG0 1328 aaKnown RBP22.06■■□□□ 1.12
CLN3-211ENST00000564091 FOXN1O15353 648 aa22.06■■□□□ 1.12
CLN3-211ENST00000564091 TCIRG1Q13488 830 aa22.06■■□□□ 1.12
CLN3-211ENST00000564091 DDX21Q9NR30 783 aaKnown RBP eCLIP22.06■■□□□ 1.12
CLN3-211ENST00000564091 TRIM35Q9UPQ4 493 aa22.06■■□□□ 1.12
CLN3-211ENST00000564091 TRMT112Q9UI30 125 aaKnown RBP22.05■■□□□ 1.12
CLN3-211ENST00000564091 FMR1Q06787 632 aaKnown RBP eCLIP22.04■■□□□ 1.12
CLN3-211ENST00000564091 RUNDC1Q96C34 613 aa22.04■■□□□ 1.12
CLN3-211ENST00000564091 CHPF2Q9P2E5 772 aa22.04■■□□□ 1.12
CLN3-211ENST00000564091 BBOX1O75936 387 aa22.03■■□□□ 1.12
CLN3-211ENST00000564091 WDR43Q15061 677 aaKnown RBP eCLIP22.03■■□□□ 1.12
CLN3-211ENST00000564091 DEFB115Q30KQ5 88 aa22.03■■□□□ 1.12
CLN3-211ENST00000564091 DPP8Q6V1X1 898 aaPredicted RBP22.03■■□□□ 1.12
CLN3-211ENST00000564091 SP8Q8IXZ3 490 aa22.03■■□□□ 1.12
CLN3-211ENST00000564091 SCN4AP35499 1836 aa22.03■■□□□ 1.12
CLN3-211ENST00000564091 NUP98P52948 1817 aa22.03■■□□□ 1.12
CLN3-211ENST00000564091 RASSF10A6NK89 507 aa22.02■■□□□ 1.12
CLN3-211ENST00000564091 DDX46Q7L014 1031 aaKnown RBP22.02■■□□□ 1.12
CLN3-211ENST00000564091 MPNDQ8N594 471 aa22.02■■□□□ 1.12
CLN3-211ENST00000564091 RTFDC1Q9BY42 306 aaPredicted RBP22.02■■□□□ 1.12
CLN3-211ENST00000564091 ZNRF3Q9ULT6 936 aa22.02■■□□□ 1.12
CLN3-211ENST00000564091 ABT1Q9ULW3 272 aaKnown RBP22.02■■□□□ 1.12
CLN3-211ENST00000564091 ADAMTS8Q9UP79 889 aa22.02■■□□□ 1.12
CLN3-211ENST00000564091 SH3TC1Q8TE82 1336 aa22.02■■□□□ 1.12
CLN3-211ENST00000564091 CXCL9Q07325 125 aa22.01■■□□□ 1.11
CLN3-211ENST00000564091 HDGFL1Q5TGJ6 251 aa22.01■■□□□ 1.11
CLN3-211ENST00000564091 SUPT20HQ8NEM7 779 aa22.01■■□□□ 1.11
CLN3-211ENST00000564091 VPS33BQ9H267 617 aa22.01■■□□□ 1.11
CLN3-211ENST00000564091 GRAPQ13588 217 aa22■■□□□ 1.11
CLN3-211ENST00000564091 USP50Q70EL3 339 aaPredicted RBP22■■□□□ 1.11
CLN3-211ENST00000564091 GRAPLQ8TC17 118 aaPredicted RBP22■■□□□ 1.11
CLN3-211ENST00000564091 AIDAQ96BJ3 306 aa22■■□□□ 1.11
CLN3-211ENST00000564091 TRAF5O00463 557 aa21.99■■□□□ 1.11
CLN3-211ENST00000564091 WBP1LQ9NX94 342 aa21.99■■□□□ 1.11
CLN3-211ENST00000564091 GPRC5DQ9NZD1 345 aa21.99■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms