RNA–Protein interactions for RNA: ENST00000559399.5

LRRC28-213, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-213ENST00000559399 SYNE4Q8N205 404 aa19.52■□□□□ 0.72
LRRC28-213ENST00000559399 NECTIN2Q92692 538 aa19.52■□□□□ 0.72
LRRC28-213ENST00000559399 PSMD1Q99460 953 aa19.52■□□□□ 0.72
LRRC28-213ENST00000559399 ZNF541Q9H0D2 1346 aa19.51■□□□□ 0.71
LRRC28-213ENST00000559399 SNED1Q8TER0 1413 aa19.51■□□□□ 0.71
LRRC28-213ENST00000559399 HSP90AB3PQ58FF7 597 aa19.51■□□□□ 0.71
LRRC28-213ENST00000559399 CHADLQ6NUI6 762 aa19.51■□□□□ 0.71
LRRC28-213ENST00000559399 COPS6Q7L5N1 327 aa19.51■□□□□ 0.71
LRRC28-213ENST00000559399 JMYQ8N9B5 988 aa19.51■□□□□ 0.71
LRRC28-213ENST00000559399 RBM17Q96I25 401 aaKnown RBP19.51■□□□□ 0.71
LRRC28-213ENST00000559399 CRAMP1Q96RY5 1269 aa19.51■□□□□ 0.71
LRRC28-213ENST00000559399 UTP14AQ9BVJ6 771 aaKnown RBP19.51■□□□□ 0.71
LRRC28-213ENST00000559399 LAS1LQ9Y4W2 734 aaKnown RBP19.51■□□□□ 0.71
LRRC28-213ENST00000559399 RNF123Q5XPI4 1314 aa19.51■□□□□ 0.71
LRRC28-213ENST00000559399 PPEF1O14829 653 aaPredicted RBP19.5■□□□□ 0.71
LRRC28-213ENST00000559399 AIMP1Q12904 312 aaKnown RBP19.5■□□□□ 0.71
LRRC28-213ENST00000559399 KRT24Q2M2I5 525 aa19.5■□□□□ 0.71
LRRC28-213ENST00000559399 GRIPAP1Q4V328 841 aa19.5■□□□□ 0.71
LRRC28-213ENST00000559399 C3orf67Q6ZVT6 689 aa19.5■□□□□ 0.71
LRRC28-213ENST00000559399 XAGE3Q8WTP9 111 aa19.5■□□□□ 0.71
LRRC28-213ENST00000559399 NLRP3Q96P20 1036 aa19.5■□□□□ 0.71
LRRC28-213ENST00000559399 PRKRIP1Q9H875 184 aaPredicted RBP19.5■□□□□ 0.71
LRRC28-213ENST00000559399 DDX21Q9NR30 783 aaKnown RBP eCLIP19.5■□□□□ 0.71
LRRC28-213ENST00000559399 POTEIP0CG38 1075 aa19.49■□□□□ 0.71
LRRC28-213ENST00000559399 POTEJP0CG39 1038 aa19.49■□□□□ 0.71
LRRC28-213ENST00000559399 TAF1DQ9H5J8 278 aaPredicted RBP19.49■□□□□ 0.71
LRRC28-213ENST00000559399 FZD9O00144 591 aa19.48■□□□□ 0.71
LRRC28-213ENST00000559399 HOXB7P09629 217 aa19.48■□□□□ 0.71
LRRC28-213ENST00000559399 SLC10A5Q5PT55 438 aa19.48■□□□□ 0.71
LRRC28-213ENST00000559399 LDHDQ86WU2 507 aa19.48■□□□□ 0.71
LRRC28-213ENST00000559399 JDP2Q8WYK2 163 aa19.48■□□□□ 0.71
LRRC28-213ENST00000559399 HDGFL1Q5TGJ6 251 aa19.47■□□□□ 0.71
LRRC28-213ENST00000559399 NLRP10Q86W26 655 aa19.47■□□□□ 0.71
LRRC28-213ENST00000559399 CHPF2Q9P2E5 772 aa19.47■□□□□ 0.71
LRRC28-213ENST00000559399 CACNA1SQ13698 1873 aa19.46■□□□□ 0.71
LRRC28-213ENST00000559399 TCIRG1Q13488 830 aa19.46■□□□□ 0.71
LRRC28-213ENST00000559399 GPC2Q8N158 579 aa19.46■□□□□ 0.71
LRRC28-213ENST00000559399 CFAP44Q96MT7 982 aa19.46■□□□□ 0.71
LRRC28-213ENST00000559399 TMX4Q9H1E5 349 aaPredicted RBP19.46■□□□□ 0.71
LRRC28-213ENST00000559399 HACL1Q9UJ83 578 aa19.46■□□□□ 0.71
LRRC28-213ENST00000559399 TCERG1O14776 1098 aaKnown RBP19.45■□□□□ 0.7
LRRC28-213ENST00000559399 DICER1Q9UPY3 1922 aaKnown RBP19.45■□□□□ 0.7
LRRC28-213ENST00000559399 EPHX2P34913 555 aa19.44■□□□□ 0.7
LRRC28-213ENST00000559399 EIF6P56537 245 aaKnown RBP19.44■□□□□ 0.7
LRRC28-213ENST00000559399 EAPPQ56P03 285 aaPredicted RBP19.44■□□□□ 0.7
LRRC28-213ENST00000559399 SLC51AQ86UW1 340 aa19.44■□□□□ 0.7
LRRC28-213ENST00000559399 LARGE2Q8N3Y3 721 aa19.44■□□□□ 0.7
LRRC28-213ENST00000559399 CREBZFQ9NS37 354 aa19.44■□□□□ 0.7
LRRC28-213ENST00000559399 DBF4Q9UBU7 674 aaPredicted RBP19.44■□□□□ 0.7
LRRC28-213ENST00000559399 ATP6V0A2Q9Y487 856 aa19.44■□□□□ 0.7
LRRC28-213ENST00000559399 ABCC4O15439 1325 aa19.44■□□□□ 0.7
LRRC28-213ENST00000559399 SH3TC1Q8TE82 1336 aa19.44■□□□□ 0.7
LRRC28-213ENST00000559399 NUP98P52948 1817 aa19.44■□□□□ 0.7
LRRC28-213ENST00000559399 CCDC88AQ3V6T2 1871 aa19.43■□□□□ 0.7
LRRC28-213ENST00000559399 TRMT112Q9UI30 125 aaKnown RBP19.43■□□□□ 0.7
LRRC28-213ENST00000559399 HCLS1P14317 486 aaPredicted RBP19.42■□□□□ 0.7
LRRC28-213ENST00000559399 DUSP27Q5VZP5 1158 aa19.42■□□□□ 0.7
LRRC28-213ENST00000559399 PNMA8AQ86V59 439 aaPredicted RBP19.42■□□□□ 0.7
LRRC28-213ENST00000559399 PLBD2Q8NHP8 589 aa19.42■□□□□ 0.7
LRRC28-213ENST00000559399 MBIPQ9NS73 344 aa19.42■□□□□ 0.7
LRRC28-213ENST00000559399 COL4A5P29400 1685 aa19.41■□□□□ 0.7
LRRC28-213ENST00000559399 APAF1O14727 1248 aa19.41■□□□□ 0.7
LRRC28-213ENST00000559399 CALD1Q05682 793 aaKnown RBP19.41■□□□□ 0.7
LRRC28-213ENST00000559399 NIM1KQ8IY84 436 aa19.41■□□□□ 0.7
LRRC28-213ENST00000559399 GJA3Q9Y6H8 435 aa19.41■□□□□ 0.7
LRRC28-213ENST00000559399 PASKQ96RG2 1323 aa19.41■□□□□ 0.7
LRRC28-213ENST00000559399 PPIP5K2O43314 1243 aa19.4■□□□□ 0.7
LRRC28-213ENST00000559399 BBOX1O75936 387 aa19.4■□□□□ 0.7
LRRC28-213ENST00000559399 ANKRD13DQ6ZTN6 518 aa19.4■□□□□ 0.7
LRRC28-213ENST00000559399 DDX46Q7L014 1031 aaKnown RBP19.4■□□□□ 0.7
LRRC28-213ENST00000559399 IFT57Q9NWB7 429 aa19.4■□□□□ 0.7
LRRC28-213ENST00000559399 HYPKQ9NX55 129 aa19.4■□□□□ 0.7
LRRC28-213ENST00000559399 CLEC11AQ9Y240 323 aa19.4■□□□□ 0.7
LRRC28-213ENST00000559399 ZNF853P0CG23 659 aa19.39■□□□□ 0.69
LRRC28-213ENST00000559399 LMOD1P29536 600 aaPredicted RBP19.39■□□□□ 0.69
LRRC28-213ENST00000559399 SUPT20HQ8NEM7 779 aa19.39■□□□□ 0.69
LRRC28-213ENST00000559399 VPS33BQ9H267 617 aa19.39■□□□□ 0.69
LRRC28-213ENST00000559399 GRAPQ13588 217 aa19.38■□□□□ 0.69
LRRC28-213ENST00000559399 AOC3Q16853 763 aa19.38■□□□□ 0.69
LRRC28-213ENST00000559399 DPP8Q6V1X1 898 aaPredicted RBP19.38■□□□□ 0.69
LRRC28-213ENST00000559399 SP8Q8IXZ3 490 aa19.38■□□□□ 0.69
LRRC28-213ENST00000559399 GRAPLQ8TC17 118 aaPredicted RBP19.38■□□□□ 0.69
LRRC28-213ENST00000559399 ISCA1Q9BUE6 129 aa19.38■□□□□ 0.69
LRRC28-213ENST00000559399 RTFDC1Q9BY42 306 aaPredicted RBP19.38■□□□□ 0.69
LRRC28-213ENST00000559399 ITGBL1O95965 494 aaPredicted RBP19.37■□□□□ 0.69
LRRC28-213ENST00000559399 SCNN1DP51172 638 aa19.37■□□□□ 0.69
LRRC28-213ENST00000559399 GNAI1P63096 354 aa19.37■□□□□ 0.69
LRRC28-213ENST00000559399 ZNF428Q96B54 188 aa19.37■□□□□ 0.69
LRRC28-213ENST00000559399 MKRN1Q9UHC7 482 aaKnown RBP19.37■□□□□ 0.69
LRRC28-213ENST00000559399 SCN4AP35499 1836 aa19.37■□□□□ 0.69
LRRC28-213ENST00000559399 ATP5J2-PTCD1G3V325 749 aa19.36■□□□□ 0.69
LRRC28-213ENST00000559399 HSPA1AP0DMV8 641 aaKnown RBP19.36■□□□□ 0.69
LRRC28-213ENST00000559399 HSPA1BP0DMV9 641 aaKnown RBP19.36■□□□□ 0.69
LRRC28-213ENST00000559399 MPNDQ8N594 471 aa19.36■□□□□ 0.69
LRRC28-213ENST00000559399 TMEM88BA6NKF7 163 aa19.35■□□□□ 0.69
LRRC28-213ENST00000559399 GOLGA2Q08379 1002 aa19.35■□□□□ 0.69
LRRC28-213ENST00000559399 MAP1SQ66K74 1059 aaPredicted RBP19.35■□□□□ 0.69
LRRC28-213ENST00000559399 TMC4Q7Z404 712 aa19.35■□□□□ 0.69
LRRC28-213ENST00000559399 CNTROBQ8N137 903 aa19.35■□□□□ 0.69
LRRC28-213ENST00000559399 FAM89AQ96GI7 184 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms