RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 SCAMP3O14828 347 aaKnown RBP6.78□□□□□ -1.32
LDLR-209ENST00000558528 SMARCA5O60264 1052 aaPredicted RBP6.78□□□□□ -1.32
LDLR-209ENST00000558528 F12P00748 615 aaPredicted RBP6.78□□□□□ -1.32
LDLR-209ENST00000558528 CENPBP07199 599 aaPredicted RBP6.78□□□□□ -1.32
LDLR-209ENST00000558528 ERCC5P28715 1186 aaPredicted RBP6.78□□□□□ -1.32
LDLR-209ENST00000558528 BAG6P46379 1132 aa6.78□□□□□ -1.32
LDLR-209ENST00000558528 SEC13P55735 322 aa6.78□□□□□ -1.32
LDLR-209ENST00000558528 SAFB2Q14151 953 aaKnown RBP eCLIP6.78□□□□□ -1.32
LDLR-209ENST00000558528 PDXDC2PQ6P474 469 aa6.78□□□□□ -1.32
LDLR-209ENST00000558528 RGL4Q8IZJ4 473 aa6.78□□□□□ -1.32
LDLR-209ENST00000558528 PHTF2Q8N3S3 785 aa6.78□□□□□ -1.32
LDLR-209ENST00000558528 SYMPKQ92797 1274 aaKnown RBP6.78□□□□□ -1.32
LDLR-209ENST00000558528 PRR14Q9BWN1 585 aa6.78□□□□□ -1.32
LDLR-209ENST00000558528 CFAP65Q6ZU64 1925 aaKnown RBP6.78□□□□□ -1.32
LDLR-209ENST00000558528 DCCP43146 1447 aa6.77□□□□□ -1.33
LDLR-209ENST00000558528 PTCD1O75127 700 aaKnown RBP6.77□□□□□ -1.33
LDLR-209ENST00000558528 PTPRNQ16849 979 aa6.77□□□□□ -1.33
LDLR-209ENST00000558528 TSNAXIP1Q2TAA8 658 aa6.77□□□□□ -1.33
LDLR-209ENST00000558528 PROX2Q3B8N5 592 aa6.77□□□□□ -1.33
LDLR-209ENST00000558528 NBPF14Q5TI25 921 aa6.77□□□□□ -1.33
LDLR-209ENST00000558528 ANKRD13AQ8IZ07 590 aa6.77□□□□□ -1.33
LDLR-209ENST00000558528 KHSRPQ92945 711 aaKnown RBP eCLIP6.77□□□□□ -1.33
LDLR-209ENST00000558528 ZNF594Q96JF6 807 aaPredicted RBP6.77□□□□□ -1.33
LDLR-209ENST00000558528 RABGEF1Q9UJ41 708 aa6.77□□□□□ -1.33
LDLR-209ENST00000558528 SALL2Q9Y467 1007 aaPredicted RBP6.77□□□□□ -1.33
LDLR-209ENST00000558528 ANKRD36BQ8N2N9 1353 aa6.77□□□□□ -1.33
LDLR-209ENST00000558528 MYBBP1AQ9BQG0 1328 aaKnown RBP6.76□□□□□ -1.33
LDLR-209ENST00000558528 DISP2A7MBM2 1401 aa6.76□□□□□ -1.33
LDLR-209ENST00000558528 MST1RQ04912 1400 aa6.76□□□□□ -1.33
LDLR-209ENST00000558528 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.76□□□□□ -1.33
LDLR-209ENST00000558528 FKBP4Q02790 459 aaKnown RBP eCLIP6.76□□□□□ -1.33
LDLR-209ENST00000558528 OCLNQ16625 522 aa6.76□□□□□ -1.33
LDLR-209ENST00000558528 FAM98CQ17RN3 349 aaKnown RBP6.76□□□□□ -1.33
LDLR-209ENST00000558528 MORN1Q5T089 497 aa6.76□□□□□ -1.33
LDLR-209ENST00000558528 NLRP13Q86W25 1043 aa6.76□□□□□ -1.33
LDLR-209ENST00000558528 NUDT16Q96DE0 195 aaKnown RBP6.76□□□□□ -1.33
LDLR-209ENST00000558528 SLC12A5Q9H2X9 1139 aa6.76□□□□□ -1.33
LDLR-209ENST00000558528 PCDHB9Q9Y5E1 797 aa6.76□□□□□ -1.33
LDLR-209ENST00000558528 NSD2O96028 1365 aa6.76□□□□□ -1.33
LDLR-209ENST00000558528 PRMT3O60678 531 aa6.75□□□□□ -1.33
LDLR-209ENST00000558528 HOXB3P14651 431 aaPredicted RBP6.75□□□□□ -1.33
LDLR-209ENST00000558528 CLDN10P78369 228 aa6.75□□□□□ -1.33
LDLR-209ENST00000558528 TRAF7Q6Q0C0 670 aa6.75□□□□□ -1.33
LDLR-209ENST00000558528 USB1Q9BQ65 265 aaKnown RBP6.75□□□□□ -1.33
LDLR-209ENST00000558528 CABP1Q9NZU7 370 aa6.75□□□□□ -1.33
LDLR-209ENST00000558528 PPP1R1BQ9UD71 204 aaPredicted RBP6.75□□□□□ -1.33
LDLR-209ENST00000558528 COL22A1Q8NFW1 1626 aaPredicted RBP6.75□□□□□ -1.33
LDLR-209ENST00000558528 CHD4Q14839 1912 aa6.74□□□□□ -1.33
LDLR-209ENST00000558528 BRD4O60885 1362 aaPredicted RBP6.74□□□□□ -1.33
LDLR-209ENST00000558528 ROBO2Q9HCK4 1378 aa6.74□□□□□ -1.33
LDLR-209ENST00000558528 ZNF211Q13398 564 aaPredicted RBP6.74□□□□□ -1.33
LDLR-209ENST00000558528 MORC1Q86VD1 984 aa6.74□□□□□ -1.33
LDLR-209ENST00000558528 DDX17Q92841 729 aaKnown RBP6.74□□□□□ -1.33
LDLR-209ENST00000558528 COL26A1Q96A83 441 aa6.74□□□□□ -1.33
LDLR-209ENST00000558528 KCNK17Q96T54 332 aa6.74□□□□□ -1.33
LDLR-209ENST00000558528 ZBED2Q9BTP6 218 aa6.74□□□□□ -1.33
LDLR-209ENST00000558528 SLC4A5Q9BY07 1137 aa6.74□□□□□ -1.33
LDLR-209ENST00000558528 MRS2Q9HD23 443 aa6.74□□□□□ -1.33
LDLR-209ENST00000558528 PLEKHH1Q9ULM0 1364 aa6.73□□□□□ -1.33
LDLR-209ENST00000558528 ACTN4O43707 911 aaKnown RBP6.73□□□□□ -1.33
LDLR-209ENST00000558528 GIGYF1O75420 1035 aaPredicted RBP6.73□□□□□ -1.33
LDLR-209ENST00000558528 MRPL58Q14197 206 aaKnown RBP6.73□□□□□ -1.33
LDLR-209ENST00000558528 CC2D1BQ5T0F9 858 aaKnown RBP6.73□□□□□ -1.33
LDLR-209ENST00000558528 NOP9Q86U38 636 aaKnown RBP6.73□□□□□ -1.33
LDLR-209ENST00000558528 LAPTM4BQ86VI4 370 aa6.73□□□□□ -1.33
LDLR-209ENST00000558528 GTF3C2Q8WUA4 911 aaPredicted RBP6.73□□□□□ -1.33
LDLR-209ENST00000558528 CFAP53Q96M91 514 aa6.73□□□□□ -1.33
LDLR-209ENST00000558528 DOLKQ9UPQ8 538 aa6.73□□□□□ -1.33
LDLR-209ENST00000558528 SLC27A5Q9Y2P5 690 aa6.73□□□□□ -1.33
LDLR-209ENST00000558528 ANKARQ7Z5J8 1434 aa6.73□□□□□ -1.33
LDLR-209ENST00000558528 PTPRUQ92729 1446 aa6.73□□□□□ -1.33
LDLR-209ENST00000558528 MARF1Q9Y4F3 1742 aaKnown RBP6.73□□□□□ -1.33
LDLR-209ENST00000558528 PARD3Q8TEW0 1356 aa6.72□□□□□ -1.33
LDLR-209ENST00000558528 M0R2N6 131 aa6.72□□□□□ -1.33
LDLR-209ENST00000558528 JUNDP17535 347 aa6.72□□□□□ -1.33
LDLR-209ENST00000558528 GTF2IP78347 998 aa6.72□□□□□ -1.33
LDLR-209ENST00000558528 KCNH2Q12809 1159 aa6.72□□□□□ -1.33
LDLR-209ENST00000558528 RNF20Q5VTR2 975 aa6.72□□□□□ -1.33
LDLR-209ENST00000558528 SEPT12Q8IYM1 358 aa6.72□□□□□ -1.33
LDLR-209ENST00000558528 NGDNQ8NEJ9 315 aaKnown RBP6.72□□□□□ -1.33
LDLR-209ENST00000558528 ARMC5Q96C12 935 aa6.72□□□□□ -1.33
LDLR-209ENST00000558528 CITED4Q96RK1 184 aa6.72□□□□□ -1.33
LDLR-209ENST00000558528 CARD14Q9BXL6 1004 aa6.72□□□□□ -1.33
LDLR-209ENST00000558528 RBCK1Q9BYM8 510 aa6.72□□□□□ -1.33
LDLR-209ENST00000558528 METTL5Q9NRN9 209 aaKnown RBP6.72□□□□□ -1.33
LDLR-209ENST00000558528 RGPD1P0DJD0 1748 aa6.72□□□□□ -1.33
LDLR-209ENST00000558528 SOS2Q07890 1332 aaPredicted RBP6.72□□□□□ -1.33
LDLR-209ENST00000558528 ATP7BP35670 1465 aa6.72□□□□□ -1.33
LDLR-209ENST00000558528 SLIT2O94813 1529 aa6.71□□□□□ -1.33
LDLR-209ENST00000558528 GABBR2O75899 941 aa6.71□□□□□ -1.34
LDLR-209ENST00000558528 DKK1O94907 266 aa6.71□□□□□ -1.34
LDLR-209ENST00000558528 FAM13AO94988 1023 aa6.71□□□□□ -1.34
LDLR-209ENST00000558528 FMNL1O95466 1100 aaPredicted RBP6.71□□□□□ -1.34
LDLR-209ENST00000558528 CTHP32929 405 aa6.71□□□□□ -1.34
LDLR-209ENST00000558528 ARHGAP4P98171 946 aa6.71□□□□□ -1.34
LDLR-209ENST00000558528 CCDC102BQ68D86 513 aa6.71□□□□□ -1.34
LDLR-209ENST00000558528 KRT27Q7Z3Y8 459 aa6.71□□□□□ -1.34
LDLR-209ENST00000558528 BACH2Q9BYV9 841 aa6.71□□□□□ -1.34
LDLR-209ENST00000558528 PNNQ9H307 717 aaKnown RBP6.71□□□□□ -1.34
LDLR-209ENST00000558528 CUEDC1Q9NWM3 386 aaPredicted RBP6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 119 ms