RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 TMEM87AQ8NBN3 555 aa13.03□□□□□ -0.32
USP3-206ENST00000558157 DCAF5Q96JK2 942 aa13.03□□□□□ -0.32
USP3-206ENST00000558157 CCDC9Q9Y3X0 531 aaKnown RBP13.03□□□□□ -0.32
USP3-206ENST00000558157 BTBD11A6QL63 1104 aa13.02□□□□□ -0.32
USP3-206ENST00000558157 SMTNL1A8MU46 457 aa13.02□□□□□ -0.32
USP3-206ENST00000558157 TULP2O00295 520 aa13.02□□□□□ -0.32
USP3-206ENST00000558157 GSPT1P15170 499 aaKnown RBP13.02□□□□□ -0.32
USP3-206ENST00000558157 TTC22Q5TAA0 569 aa13.02□□□□□ -0.32
USP3-206ENST00000558157 DDX54Q8TDD1 881 aaKnown RBP13.02□□□□□ -0.32
USP3-206ENST00000558157 SLC52A2Q9HAB3 445 aa13.02□□□□□ -0.32
USP3-206ENST00000558157 KCNJ4P48050 445 aa13.02□□□□□ -0.33
USP3-206ENST00000558157 CUL4AQ13619 759 aa13.02□□□□□ -0.33
USP3-206ENST00000558157 FNBP4Q8N3X1 1017 aaPredicted RBP13.02□□□□□ -0.33
USP3-206ENST00000558157 KCNQ3O43525 872 aa13.01□□□□□ -0.33
USP3-206ENST00000558157 KRT222Q8N1A0 295 aa13.01□□□□□ -0.33
USP3-206ENST00000558157 THRAP3Q9Y2W1 955 aaKnown RBP13.01□□□□□ -0.33
USP3-206ENST00000558157 PAXBP1Q9Y5B6 917 aa13.01□□□□□ -0.33
USP3-206ENST00000558157 FAM177BA6PVY3 158 aa13.01□□□□□ -0.33
USP3-206ENST00000558157 PLEKHM2Q8IWE5 1019 aa13.01□□□□□ -0.33
USP3-206ENST00000558157 VPS72Q15906 364 aa13□□□□□ -0.33
USP3-206ENST00000558157 VGLL3A8MV65 326 aa13□□□□□ -0.33
USP3-206ENST00000558157 EIF4A1P60842 406 aaKnown RBP13□□□□□ -0.33
USP3-206ENST00000558157 NKX1-1Q15270 411 aaPredicted RBP13□□□□□ -0.33
USP3-206ENST00000558157 MRPL50Q8N5N7 158 aaKnown RBP13□□□□□ -0.33
USP3-206ENST00000558157 USP21Q9UK80 565 aa13□□□□□ -0.33
USP3-206ENST00000558157 PAPPAQ13219 1627 aa12.99□□□□□ -0.33
USP3-206ENST00000558157 MX1P20591 662 aa12.99□□□□□ -0.33
USP3-206ENST00000558157 NFATC2IPQ8NCF5 419 aa12.99□□□□□ -0.33
USP3-206ENST00000558157 CABP4P57796 275 aa12.99□□□□□ -0.33
USP3-206ENST00000558157 C17orf53Q8N3J3 647 aaPredicted RBP12.99□□□□□ -0.33
USP3-206ENST00000558157 KIF18AQ8NI77 898 aa12.99□□□□□ -0.33
USP3-206ENST00000558157 CDCA7Q9BWT1 371 aaPredicted RBP12.99□□□□□ -0.33
USP3-206ENST00000558157 C5P01031 1676 aa12.98□□□□□ -0.33
USP3-206ENST00000558157 AFF2P51816 1311 aa12.98□□□□□ -0.33
USP3-206ENST00000558157 IGSF3O75054 1194 aa12.98□□□□□ -0.33
USP3-206ENST00000558157 BARGINQ6ZT62 677 aa12.98□□□□□ -0.33
USP3-206ENST00000558157 TMX3Q96JJ7 454 aa12.98□□□□□ -0.33
USP3-206ENST00000558157 FAM53CQ9NYF3 392 aa12.98□□□□□ -0.33
USP3-206ENST00000558157 DOT1LQ8TEK3 1739 aa12.98□□□□□ -0.33
USP3-206ENST00000558157 WDR33Q9C0J8 1336 aaKnown RBP12.98□□□□□ -0.33
USP3-206ENST00000558157 EXOC5O00471 708 aa12.98□□□□□ -0.33
USP3-206ENST00000558157 SLC39A6Q13433 755 aa12.98□□□□□ -0.33
USP3-206ENST00000558157 ITGB4P16144 1822 aa12.97□□□□□ -0.33
USP3-206ENST00000558157 GLI3P10071 1580 aa12.97□□□□□ -0.33
USP3-206ENST00000558157 KCNF1Q9H3M0 494 aa12.97□□□□□ -0.33
USP3-206ENST00000558157 FAM98CQ17RN3 349 aaKnown RBP12.97□□□□□ -0.33
USP3-206ENST00000558157 SIRT2Q8IXJ6 389 aa12.97□□□□□ -0.33
USP3-206ENST00000558157 DCTPP1Q9H773 170 aa12.97□□□□□ -0.33
USP3-206ENST00000558157 PYCARDQ9ULZ3 195 aa12.97□□□□□ -0.33
USP3-206ENST00000558157 THSD7AQ9UPZ6 1657 aa12.96□□□□□ -0.33
USP3-206ENST00000558157 SOS1Q07889 1333 aaPredicted RBP12.96□□□□□ -0.33
USP3-206ENST00000558157 UBR2Q8IWV8 1755 aa12.96□□□□□ -0.33
USP3-206ENST00000558157 ERVV-2B6SEH9 535 aa12.96□□□□□ -0.33
USP3-206ENST00000558157 ERC2O15083 957 aa12.96□□□□□ -0.33
USP3-206ENST00000558157 DDB1Q16531 1140 aa12.96□□□□□ -0.33
USP3-206ENST00000558157 ZNF790Q6PG37 636 aa12.96□□□□□ -0.33
USP3-206ENST00000558157 ZNF397Q8NF99 534 aaPredicted RBP12.96□□□□□ -0.33
USP3-206ENST00000558157 NECTIN2Q92692 538 aa12.96□□□□□ -0.33
USP3-206ENST00000558157 ABCC4O15439 1325 aa12.96□□□□□ -0.34
USP3-206ENST00000558157 ZBTB22O15209 634 aa12.96□□□□□ -0.34
USP3-206ENST00000558157 ANAPC15P60006 121 aa12.96□□□□□ -0.34
USP3-206ENST00000558157 SLFNL1Q499Z3 407 aa12.96□□□□□ -0.34
USP3-206ENST00000558157 HEG1Q9ULI3 1381 aa12.95□□□□□ -0.34
USP3-206ENST00000558157 ATRNO75882 1429 aa12.95□□□□□ -0.34
USP3-206ENST00000558157 HCLS1P14317 486 aaPredicted RBP12.95□□□□□ -0.34
USP3-206ENST00000558157 UBE2HP62256 183 aa12.95□□□□□ -0.34
USP3-206ENST00000558157 USP48Q86UV5 1035 aa12.95□□□□□ -0.34
USP3-206ENST00000558157 IL17RAQ96F46 866 aa12.95□□□□□ -0.34
USP3-206ENST00000558157 FUCA2Q9BTY2 467 aa12.94□□□□□ -0.34
USP3-206ENST00000558157 HOXB7P09629 217 aa12.94□□□□□ -0.34
USP3-206ENST00000558157 HDGFL1Q5TGJ6 251 aa12.94□□□□□ -0.34
USP3-206ENST00000558157 CCDC112Q8NEF3 446 aa12.94□□□□□ -0.34
USP3-206ENST00000558157 KCPQ6ZWJ8 1503 aa12.94□□□□□ -0.34
USP3-206ENST00000558157 LAMB4A4D0S4 1761 aa12.94□□□□□ -0.34
USP3-206ENST00000558157 PRAMEF22A3QJZ6 481 aa12.93□□□□□ -0.34
USP3-206ENST00000558157 IRX3P78415 501 aaPredicted RBP12.93□□□□□ -0.34
USP3-206ENST00000558157 CCDC30Q5VVM6 783 aa12.93□□□□□ -0.34
USP3-206ENST00000558157 TTC5Q8N0Z6 440 aa12.93□□□□□ -0.34
USP3-206ENST00000558157 GADD45BO75293 160 aaPredicted RBP12.93□□□□□ -0.34
USP3-206ENST00000558157 GIGYF1O75420 1035 aaPredicted RBP12.93□□□□□ -0.34
USP3-206ENST00000558157 EIF2S2P20042 333 aaKnown RBP12.93□□□□□ -0.34
USP3-206ENST00000558157 SDSP20132 328 aa12.93□□□□□ -0.34
USP3-206ENST00000558157 MCCP23508 829 aa12.93□□□□□ -0.34
USP3-206ENST00000558157 RNF20Q5VTR2 975 aa12.93□□□□□ -0.34
USP3-206ENST00000558157 TMOD3Q9NYL9 352 aa12.93□□□□□ -0.34
USP3-206ENST00000558157 CACNA1FO60840 1977 aa12.93□□□□□ -0.34
USP3-206ENST00000558157 RGS12O14924 1447 aa12.93□□□□□ -0.34
USP3-206ENST00000558157 SLC4A2P04920 1241 aa12.92□□□□□ -0.34
USP3-206ENST00000558157 NEK4P51957 841 aa12.92□□□□□ -0.34
USP3-206ENST00000558157 MPNDQ8N594 471 aa12.92□□□□□ -0.34
USP3-206ENST00000558157 MARCH10Q8NA82 808 aaPredicted RBP12.92□□□□□ -0.34
USP3-206ENST00000558157 ZNF496Q96IT1 587 aaPredicted RBP12.92□□□□□ -0.34
USP3-206ENST00000558157 CHAMP1Q96JM3 812 aa12.92□□□□□ -0.34
USP3-206ENST00000558157 STK31Q9BXU1 1019 aa12.92□□□□□ -0.34
USP3-206ENST00000558157 EFCC1Q9HA90 598 aa12.92□□□□□ -0.34
USP3-206ENST00000558157 ATP6V1DQ9Y5K8 247 aa12.92□□□□□ -0.34
USP3-206ENST00000558157 RPAP1Q9BWH6 1393 aaPredicted RBP12.91□□□□□ -0.34
USP3-206ENST00000558157 A0A0G2JS52 829 aa12.91□□□□□ -0.34
USP3-206ENST00000558157 EPB41L2O43491 1005 aaKnown RBP12.91□□□□□ -0.34
USP3-206ENST00000558157 G2E3Q7L622 706 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms