RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 TAF1DQ9H5J8 278 aaPredicted RBP13.91□□□□□ -0.18
SHMT2-215ENST00000554656 TAF1P21675 1872 aa13.91□□□□□ -0.18
SHMT2-215ENST00000554656 HOXA10P31260 410 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-215ENST00000554656 IARSP41252 1262 aaKnown RBP13.9□□□□□ -0.18
SHMT2-215ENST00000554656 RALBP1Q15311 655 aa13.9□□□□□ -0.18
SHMT2-215ENST00000554656 RTKN2Q8IZC4 609 aa13.9□□□□□ -0.18
SHMT2-215ENST00000554656 MIER1Q8N108 512 aa13.9□□□□□ -0.18
SHMT2-215ENST00000554656 SYNE4Q8N205 404 aa13.9□□□□□ -0.18
SHMT2-215ENST00000554656 PNNQ9H307 717 aaKnown RBP13.9□□□□□ -0.18
SHMT2-215ENST00000554656 FZD9O00144 591 aa13.89□□□□□ -0.19
SHMT2-215ENST00000554656 ALDH1B1P30837 517 aa13.89□□□□□ -0.19
SHMT2-215ENST00000554656 KRT24Q2M2I5 525 aa13.89□□□□□ -0.19
SHMT2-215ENST00000554656 COL13A1Q5TAT6 717 aaPredicted RBP13.89□□□□□ -0.19
SHMT2-215ENST00000554656 CCDC146Q8IYE0 955 aa13.89□□□□□ -0.19
SHMT2-215ENST00000554656 PSMD1Q99460 953 aa13.89□□□□□ -0.19
SHMT2-215ENST00000554656 DDX60Q8IY21 1712 aaKnown RBP13.89□□□□□ -0.19
SHMT2-215ENST00000554656 PASKQ96RG2 1323 aa13.89□□□□□ -0.19
SHMT2-215ENST00000554656 MYBBP1AQ9BQG0 1328 aaKnown RBP13.89□□□□□ -0.19
SHMT2-215ENST00000554656 EIF2S2P20042 333 aaKnown RBP13.88□□□□□ -0.19
SHMT2-215ENST00000554656 IQCA1LA6NCM1 817 aa13.87□□□□□ -0.19
SHMT2-215ENST00000554656 ANP32CO43423 234 aa13.87□□□□□ -0.19
SHMT2-215ENST00000554656 LDHDQ86WU2 507 aa13.87□□□□□ -0.19
SHMT2-215ENST00000554656 NECTIN2Q92692 538 aa13.87□□□□□ -0.19
SHMT2-215ENST00000554656 RPGRQ92834 1020 aaKnown RBP13.87□□□□□ -0.19
SHMT2-215ENST00000554656 BABAM1Q9NWV8 329 aa13.87□□□□□ -0.19
SHMT2-215ENST00000554656 TRIM35Q9UPQ4 493 aa13.87□□□□□ -0.19
SHMT2-215ENST00000554656 RNF123Q5XPI4 1314 aa13.87□□□□□ -0.19
SHMT2-215ENST00000554656 COL4A1P02462 1669 aa13.86□□□□□ -0.19
SHMT2-215ENST00000554656 HSPA1AP0DMV8 641 aaKnown RBP13.86□□□□□ -0.19
SHMT2-215ENST00000554656 HSPA1BP0DMV9 641 aaKnown RBP13.86□□□□□ -0.19
SHMT2-215ENST00000554656 CRAMP1Q96RY5 1269 aa13.86□□□□□ -0.19
SHMT2-215ENST00000554656 CREBZFQ9NS37 354 aa13.86□□□□□ -0.19
SHMT2-215ENST00000554656 LRRC37AA6NMS7 1700 aa13.86□□□□□ -0.19
SHMT2-215ENST00000554656 CHL1O00533 1208 aa13.85□□□□□ -0.19
SHMT2-215ENST00000554656 PPEF1O14829 653 aaPredicted RBP13.85□□□□□ -0.19
SHMT2-215ENST00000554656 ITGBL1O95965 494 aaPredicted RBP13.85□□□□□ -0.19
SHMT2-215ENST00000554656 LMOD3Q0VAK6 560 aa13.85□□□□□ -0.19
SHMT2-215ENST00000554656 NEUROD2Q15784 382 aa13.85□□□□□ -0.19
SHMT2-215ENST00000554656 PARP10Q53GL7 1025 aa13.85□□□□□ -0.19
SHMT2-215ENST00000554656 PPP1R42Q7Z4L9 355 aa13.85□□□□□ -0.19
SHMT2-215ENST00000554656 XAGE3Q8WTP9 111 aa13.85□□□□□ -0.19
SHMT2-215ENST00000554656 HACL1Q9UJ83 578 aa13.85□□□□□ -0.19
SHMT2-215ENST00000554656 CNTNAP1P78357 1384 aa13.84□□□□□ -0.19
SHMT2-215ENST00000554656 DUOX1Q9NRD9 1551 aa13.84□□□□□ -0.19
SHMT2-215ENST00000554656 CCER2I3L3R5 266 aa13.84□□□□□ -0.19
SHMT2-215ENST00000554656 TCERG1O14776 1098 aaKnown RBP13.84□□□□□ -0.19
SHMT2-215ENST00000554656 EPHX2P34913 555 aa13.84□□□□□ -0.19
SHMT2-215ENST00000554656 EAPPQ56P03 285 aaPredicted RBP13.84□□□□□ -0.19
SHMT2-215ENST00000554656 SLC10A5Q5PT55 438 aa13.84□□□□□ -0.19
SHMT2-215ENST00000554656 CC2D2BQ6DHV5 1058 aa13.84□□□□□ -0.19
SHMT2-215ENST00000554656 COPS6Q7L5N1 327 aa13.84□□□□□ -0.19
SHMT2-215ENST00000554656 GPC2Q8N158 579 aa13.84□□□□□ -0.19
SHMT2-215ENST00000554656 RBM17Q96I25 401 aaKnown RBP13.84□□□□□ -0.19
SHMT2-215ENST00000554656 UTP14AQ9BVJ6 771 aaKnown RBP13.84□□□□□ -0.19
SHMT2-215ENST00000554656 MKRN1Q9UHC7 482 aaKnown RBP13.84□□□□□ -0.19
SHMT2-215ENST00000554656 ABCC4O15439 1325 aa13.84□□□□□ -0.19
SHMT2-215ENST00000554656 AIMP1Q12904 312 aaKnown RBP13.83□□□□□ -0.2
SHMT2-215ENST00000554656 NLRP10Q86W26 655 aa13.83□□□□□ -0.2
SHMT2-215ENST00000554656 RUNDC1Q96C34 613 aa13.83□□□□□ -0.2
SHMT2-215ENST00000554656 DDX21Q9NR30 783 aaKnown RBP eCLIP13.83□□□□□ -0.2
SHMT2-215ENST00000554656 TRPM7Q96QT4 1865 aa13.82□□□□□ -0.2
SHMT2-215ENST00000554656 HCLS1P14317 486 aaPredicted RBP13.82□□□□□ -0.2
SHMT2-215ENST00000554656 SCNN1DP51172 638 aa13.82□□□□□ -0.2
SHMT2-215ENST00000554656 JDP2Q8WYK2 163 aa13.82□□□□□ -0.2
SHMT2-215ENST00000554656 ZNF428Q96B54 188 aa13.82□□□□□ -0.2
SHMT2-215ENST00000554656 NLRP3Q96P20 1036 aa13.82□□□□□ -0.2
SHMT2-215ENST00000554656 CHPF2Q9P2E5 772 aa13.82□□□□□ -0.2
SHMT2-215ENST00000554656 ADAMTS8Q9UP79 889 aa13.82□□□□□ -0.2
SHMT2-215ENST00000554656 TCIRG1Q13488 830 aa13.81□□□□□ -0.2
SHMT2-215ENST00000554656 AOC3Q16853 763 aa13.81□□□□□ -0.2
SHMT2-215ENST00000554656 MAP1SQ66K74 1059 aaPredicted RBP13.81□□□□□ -0.2
SHMT2-215ENST00000554656 LARGE2Q8N3Y3 721 aa13.81□□□□□ -0.2
SHMT2-215ENST00000554656 ATP6V0A2Q9Y487 856 aa13.81□□□□□ -0.2
SHMT2-215ENST00000554656 LAS1LQ9Y4W2 734 aaKnown RBP13.81□□□□□ -0.2
SHMT2-215ENST00000554656 GJA3Q9Y6H8 435 aa13.81□□□□□ -0.2
SHMT2-215ENST00000554656 THSD7BQ9C0I4 1608 aa13.8□□□□□ -0.2
SHMT2-215ENST00000554656 EPS15P42566 896 aa13.8□□□□□ -0.2
SHMT2-215ENST00000554656 EIF6P56537 245 aaKnown RBP13.8□□□□□ -0.2
SHMT2-215ENST00000554656 GRIPAP1Q4V328 841 aa13.8□□□□□ -0.2
SHMT2-215ENST00000554656 CLEC11AQ9Y240 323 aa13.8□□□□□ -0.2
SHMT2-215ENST00000554656 TMEM88BA6NKF7 163 aa13.79□□□□□ -0.2
SHMT2-215ENST00000554656 PPIP5K2O43314 1243 aa13.79□□□□□ -0.2
SHMT2-215ENST00000554656 FMR1Q06787 632 aaKnown RBP eCLIP13.79□□□□□ -0.2
SHMT2-215ENST00000554656 WDR43Q15061 677 aaKnown RBP eCLIP13.79□□□□□ -0.2
SHMT2-215ENST00000554656 HSP90AB3PQ58FF7 597 aa13.79□□□□□ -0.2
SHMT2-215ENST00000554656 HDGFL1Q5TGJ6 251 aa13.79□□□□□ -0.2
SHMT2-215ENST00000554656 PNMA8AQ86V59 439 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-215ENST00000554656 CNTROBQ8N137 903 aa13.79□□□□□ -0.2
SHMT2-215ENST00000554656 RTFDC1Q9BY42 306 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-215ENST00000554656 HOXB7P09629 217 aa13.78□□□□□ -0.2
SHMT2-215ENST00000554656 VEGFBP49765 207 aa13.78□□□□□ -0.2
SHMT2-215ENST00000554656 NIM1KQ8IY84 436 aa13.78□□□□□ -0.2
SHMT2-215ENST00000554656 PRKRIP1Q9H875 184 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-215ENST00000554656 TRMT112Q9UI30 125 aaKnown RBP13.78□□□□□ -0.2
SHMT2-215ENST00000554656 SH3TC1Q8TE82 1336 aa13.78□□□□□ -0.2
SHMT2-215ENST00000554656 ZNF853P0CG23 659 aa13.77□□□□□ -0.21
SHMT2-215ENST00000554656 TNS4Q8IZW8 715 aa13.77□□□□□ -0.21
SHMT2-215ENST00000554656 PLBD2Q8NHP8 589 aa13.77□□□□□ -0.21
SHMT2-215ENST00000554656 CFAP44Q96MT7 982 aa13.77□□□□□ -0.21
SHMT2-215ENST00000554656 ISCA1Q9BUE6 129 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 111.8 ms