RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 METP08581 1390 aa6.84□□□□□ -1.31
VTI1B-202ENST00000553619 SLC35F4A4IF30 521 aa6.84□□□□□ -1.31
VTI1B-202ENST00000553619 ERVH48-1M5A8F1 160 aa6.84□□□□□ -1.31
VTI1B-202ENST00000553619 ANP32CO43423 234 aa6.84□□□□□ -1.31
VTI1B-202ENST00000553619 LILRA1O75019 489 aa6.84□□□□□ -1.31
VTI1B-202ENST00000553619 ADH1AP07327 375 aa6.84□□□□□ -1.31
VTI1B-202ENST00000553619 ADD1P35611 737 aaKnown RBP6.84□□□□□ -1.31
VTI1B-202ENST00000553619 TMEM259Q4ZIN3 620 aa6.84□□□□□ -1.31
VTI1B-202ENST00000553619 DZIP3Q86Y13 1208 aaKnown RBP6.84□□□□□ -1.31
VTI1B-202ENST00000553619 IL27Q8NEV9 243 aa6.84□□□□□ -1.31
VTI1B-202ENST00000553619 RNF217Q8TC41 542 aa6.84□□□□□ -1.31
VTI1B-202ENST00000553619 POLMQ9NP87 494 aaPredicted RBP6.84□□□□□ -1.31
VTI1B-202ENST00000553619 ESPNB1AK53 854 aa6.83□□□□□ -1.32
VTI1B-202ENST00000553619 APBB1O00213 710 aa6.83□□□□□ -1.32
VTI1B-202ENST00000553619 SRPK2P78362 688 aaKnown RBP6.83□□□□□ -1.32
VTI1B-202ENST00000553619 SAFB2Q14151 953 aaKnown RBP eCLIP6.83□□□□□ -1.32
VTI1B-202ENST00000553619 RNFT1Q5M7Z0 435 aa6.83□□□□□ -1.32
VTI1B-202ENST00000553619 FOXD4L5Q5VV16 416 aaPredicted RBP6.83□□□□□ -1.32
VTI1B-202ENST00000553619 WAPLQ7Z5K2 1190 aa6.83□□□□□ -1.32
VTI1B-202ENST00000553619 KDF1Q8NAX2 398 aaPredicted RBP6.83□□□□□ -1.32
VTI1B-202ENST00000553619 NANOS1Q8WY41 292 aaKnown RBP6.83□□□□□ -1.32
VTI1B-202ENST00000553619 COL25A1Q9BXS0 654 aaPredicted RBP6.83□□□□□ -1.32
VTI1B-202ENST00000553619 TECPR2O15040 1411 aa6.83□□□□□ -1.32
VTI1B-202ENST00000553619 NRXN3Q9Y4C0 1643 aa6.83□□□□□ -1.32
VTI1B-202ENST00000553619 WASLO00401 505 aaPredicted RBP6.82□□□□□ -1.32
VTI1B-202ENST00000553619 ITGA6P23229 1130 aa6.82□□□□□ -1.32
VTI1B-202ENST00000553619 HSPA2P54652 639 aa6.82□□□□□ -1.32
VTI1B-202ENST00000553619 CDK19Q9BWU1 502 aa6.82□□□□□ -1.32
VTI1B-202ENST00000553619 KNSTRNQ9Y448 316 aa6.82□□□□□ -1.32
VTI1B-202ENST00000553619 ATAD2Q6PL18 1390 aa6.82□□□□□ -1.32
VTI1B-202ENST00000553619 NINLQ9Y2I6 1382 aa6.82□□□□□ -1.32
VTI1B-202ENST00000553619 SETD1AO15047 1707 aaKnown RBP6.81□□□□□ -1.32
VTI1B-202ENST00000553619 KNDC1Q76NI1 1749 aa6.81□□□□□ -1.32
VTI1B-202ENST00000553619 ARHGEF28Q8N1W1 1705 aaKnown RBP6.81□□□□□ -1.32
VTI1B-202ENST00000553619 CHD2O14647 1828 aaKnown RBP6.81□□□□□ -1.32
VTI1B-202ENST00000553619 SENP3-EIF4A1A0A087X0R7 540 aa6.81□□□□□ -1.32
VTI1B-202ENST00000553619 CDC14CA4D256 554 aa6.81□□□□□ -1.32
VTI1B-202ENST00000553619 PROSER2Q86WR7 435 aaPredicted RBP6.81□□□□□ -1.32
VTI1B-202ENST00000553619 VWA5B2Q8N398 1253 aa6.81□□□□□ -1.32
VTI1B-202ENST00000553619 TMC1Q8TDI8 760 aa6.81□□□□□ -1.32
VTI1B-202ENST00000553619 CYLDQ9NQC7 956 aa6.81□□□□□ -1.32
VTI1B-202ENST00000553619 QRICH2Q9H0J4 1663 aa6.81□□□□□ -1.32
VTI1B-202ENST00000553619 PTGIRP43119 386 aa6.8□□□□□ -1.32
VTI1B-202ENST00000553619 BRPF1P55201 1214 aaPredicted RBP6.8□□□□□ -1.32
VTI1B-202ENST00000553619 PTCH1Q13635 1447 aa6.8□□□□□ -1.32
VTI1B-202ENST00000553619 HDGFL2Q7Z4V5 671 aaPredicted RBP6.8□□□□□ -1.32
VTI1B-202ENST00000553619 C14orf37Q86TY3 774 aa6.8□□□□□ -1.32
VTI1B-202ENST00000553619 PANK3Q9H999 370 aa6.8□□□□□ -1.32
VTI1B-202ENST00000553619 TERF2IPQ9NYB0 399 aa6.8□□□□□ -1.32
VTI1B-202ENST00000553619 ASXL1Q8IXJ9 1541 aa6.8□□□□□ -1.32
VTI1B-202ENST00000553619 DISP3Q9P2K9 1392 aa6.8□□□□□ -1.32
VTI1B-202ENST00000553619 LMTK3Q96Q04 1460 aa6.79□□□□□ -1.32
VTI1B-202ENST00000553619 PTPRUQ92729 1446 aa6.79□□□□□ -1.32
VTI1B-202ENST00000553619 NCOA3Q9Y6Q9 1424 aa6.79□□□□□ -1.32
VTI1B-202ENST00000553619 GSK3AP49840 483 aa6.79□□□□□ -1.32
VTI1B-202ENST00000553619 RALBP1Q15311 655 aa6.79□□□□□ -1.32
VTI1B-202ENST00000553619 ZNF592Q92610 1267 aa6.79□□□□□ -1.32
VTI1B-202ENST00000553619 GJD4Q96KN9 370 aaPredicted RBP6.79□□□□□ -1.32
VTI1B-202ENST00000553619 CPS1P31327 1500 aa6.79□□□□□ -1.32
VTI1B-202ENST00000553619 GIGYF1O75420 1035 aaPredicted RBP6.78□□□□□ -1.32
VTI1B-202ENST00000553619 FBXO45P0C2W1 286 aa6.78□□□□□ -1.32
VTI1B-202ENST00000553619 ZNF385CQ66K41 422 aaPredicted RBP6.78□□□□□ -1.32
VTI1B-202ENST00000553619 NUDT16Q96DE0 195 aaKnown RBP6.78□□□□□ -1.32
VTI1B-202ENST00000553619 C19orf44Q9H6X5 657 aa6.78□□□□□ -1.32
VTI1B-202ENST00000553619 CUEDC1Q9NWM3 386 aaPredicted RBP6.78□□□□□ -1.32
VTI1B-202ENST00000553619 ZNF330Q9Y3S2 320 aaPredicted RBP6.78□□□□□ -1.32
VTI1B-202ENST00000553619 PCDHB9Q9Y5E1 797 aa6.78□□□□□ -1.32
VTI1B-202ENST00000553619 KTN1Q86UP2 1357 aaKnown RBP6.78□□□□□ -1.32
VTI1B-202ENST00000553619 ROBO2Q9HCK4 1378 aa6.78□□□□□ -1.32
VTI1B-202ENST00000553619 ZBBXA8MT70 800 aa6.77□□□□□ -1.33
VTI1B-202ENST00000553619 CCER2I3L3R5 266 aa6.77□□□□□ -1.33
VTI1B-202ENST00000553619 KCNMA1Q12791 1236 aa6.77□□□□□ -1.33
VTI1B-202ENST00000553619 SV2AQ7L0J3 742 aa6.77□□□□□ -1.33
VTI1B-202ENST00000553619 SEPT12Q8IYM1 358 aa6.77□□□□□ -1.33
VTI1B-202ENST00000553619 WHAMMQ8TF30 809 aa6.77□□□□□ -1.33
VTI1B-202ENST00000553619 SLC12A5Q9H2X9 1139 aa6.77□□□□□ -1.33
VTI1B-202ENST00000553619 CABP1Q9NZU7 370 aa6.77□□□□□ -1.33
VTI1B-202ENST00000553619 PLEKHH1Q9ULM0 1364 aa6.77□□□□□ -1.33
VTI1B-202ENST00000553619 ATF3P18847 181 aa6.76□□□□□ -1.33
VTI1B-202ENST00000553619 LYSMD3Q7Z3D4 306 aa6.76□□□□□ -1.33
VTI1B-202ENST00000553619 SVOPQ8N4V2 548 aa6.76□□□□□ -1.33
VTI1B-202ENST00000553619 PRM3Q9NNZ6 103 aa6.76□□□□□ -1.33
VTI1B-202ENST00000553619 ADAMTS8Q9UP79 889 aa6.76□□□□□ -1.33
VTI1B-202ENST00000553619 STRCQ7RTU9 1775 aa6.76□□□□□ -1.33
VTI1B-202ENST00000553619 XRN1Q8IZH2 1706 aaKnown RBP6.76□□□□□ -1.33
VTI1B-202ENST00000553619 CGNL1Q0VF96 1302 aa6.76□□□□□ -1.33
VTI1B-202ENST00000553619 NKTRP30414 1462 aaKnown RBP6.75□□□□□ -1.33
VTI1B-202ENST00000553619 ANKRD36BQ8N2N9 1353 aa6.75□□□□□ -1.33
VTI1B-202ENST00000553619 NPC1L1Q9UHC9 1359 aa6.75□□□□□ -1.33
VTI1B-202ENST00000553619 SLURP2P0DP57 97 aa6.75□□□□□ -1.33
VTI1B-202ENST00000553619 RHOQP17081 205 aa6.75□□□□□ -1.33
VTI1B-202ENST00000553619 PRICKLE2Q7Z3G6 844 aa6.75□□□□□ -1.33
VTI1B-202ENST00000553619 NGDNQ8NEJ9 315 aaKnown RBP6.75□□□□□ -1.33
VTI1B-202ENST00000553619 PRKRIP1Q9H875 184 aaPredicted RBP6.75□□□□□ -1.33
VTI1B-202ENST00000553619 NWD1Q149M9 1564 aa6.74□□□□□ -1.33
VTI1B-202ENST00000553619 SIPA1L2Q9P2F8 1722 aaPredicted RBP6.74□□□□□ -1.33
VTI1B-202ENST00000553619 ATP5J2-PTCD1G3V325 749 aa6.74□□□□□ -1.33
VTI1B-202ENST00000553619 GPR37L1O60883 481 aa6.74□□□□□ -1.33
VTI1B-202ENST00000553619 RNF144AP50876 292 aaPredicted RBP6.74□□□□□ -1.33
VTI1B-202ENST00000553619 TULP4Q9NRJ4 1543 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms