RNA–Protein interactions for RNA: ENST00000534647.1

CTNND1-238, Transcript of catenin delta 1, human

TSL 5

Gene CTNND1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-238	ENST00000534647	PLEKHF1	Q96S99	279 aa		15.29	■□□□□ 0.04
CTNND1-238	ENST00000534647	NYX	Q9GZU5	481 aa		15.29	■□□□□ 0.04
CTNND1-238	ENST00000534647	MIS18A	Q9NYP9	233 aa		15.29	■□□□□ 0.04
CTNND1-238	ENST00000534647	ITGBL1	O95965	494 aa	Predicted RBP	15.28	■□□□□ 0.04
CTNND1-238	ENST00000534647	GTF2E1	P29083	439 aa	Predicted RBP	15.28	■□□□□ 0.04
CTNND1-238	ENST00000534647	EIF4A1	P60842	406 aa	Known RBP	15.28	■□□□□ 0.04
CTNND1-238	ENST00000534647	PSMD1	Q99460	953 aa		15.28	■□□□□ 0.04
CTNND1-238	ENST00000534647	ZNF277	Q9NRM2	450 aa	Predicted RBP	15.28	■□□□□ 0.04
CTNND1-238	ENST00000534647	SNED1	Q8TER0	1413 aa		15.27	■□□□□ 0.04
CTNND1-238	ENST00000534647	IBTK	Q9P2D0	1353 aa	Predicted RBP	15.27	■□□□□ 0.04
CTNND1-238	ENST00000534647	SCN4A	P35499	1836 aa		15.27	■□□□□ 0.04
CTNND1-238	ENST00000534647	MAP3K15	Q6ZN16	1313 aa		15.27	■□□□□ 0.04
CTNND1-238	ENST00000534647	HOXA10	P31260	410 aa	Predicted RBP	15.27	■□□□□ 0.04
CTNND1-238	ENST00000534647	IARS	P41252	1262 aa	Known RBP	15.27	■□□□□ 0.04
CTNND1-238	ENST00000534647	PNMA8A	Q86V59	439 aa	Predicted RBP	15.27	■□□□□ 0.04
CTNND1-238	ENST00000534647	SYNE4	Q8N205	404 aa		15.27	■□□□□ 0.04
CTNND1-238	ENST00000534647	PNN	Q9H307	717 aa	Known RBP	15.27	■□□□□ 0.04
CTNND1-238	ENST00000534647	HACL1	Q9UJ83	578 aa		15.27	■□□□□ 0.04
CTNND1-238	ENST00000534647	RIC1	Q4ADV7	1423 aa		15.26	■□□□□ 0.03
CTNND1-238	ENST00000534647	OLFM4	Q6UX06	510 aa		15.26	■□□□□ 0.03
CTNND1-238	ENST00000534647	GPC2	Q8N158	579 aa		15.26	■□□□□ 0.03
CTNND1-238	ENST00000534647	CNTNAP1	P78357	1384 aa		15.25	■□□□□ 0.03
CTNND1-238	ENST00000534647	ERBB4	Q15303	1308 aa		15.25	■□□□□ 0.03
CTNND1-238	ENST00000534647	ZNF541	Q9H0D2	1346 aa		15.25	■□□□□ 0.03
CTNND1-238	ENST00000534647	FAM177B	A6PVY3	158 aa		15.25	■□□□□ 0.03
CTNND1-238	ENST00000534647	NFE2L2	Q16236	605 aa		15.25	■□□□□ 0.03
CTNND1-238	ENST00000534647	ZNF34	Q8IZ26	560 aa		15.25	■□□□□ 0.03
CTNND1-238	ENST00000534647	TMEM88B	A6NKF7	163 aa		15.24	■□□□□ 0.03
CTNND1-238	ENST00000534647	EPHX2	P34913	555 aa		15.24	■□□□□ 0.03
CTNND1-238	ENST00000534647	KIF6	Q6ZMV9	814 aa		15.24	■□□□□ 0.03
CTNND1-238	ENST00000534647	TTLL7	Q6ZT98	887 aa		15.24	■□□□□ 0.03
CTNND1-238	ENST00000534647	JDP2	Q8WYK2	163 aa		15.24	■□□□□ 0.03
CTNND1-238	ENST00000534647	CRAMP1	Q96RY5	1269 aa		15.24	■□□□□ 0.03
CTNND1-238	ENST00000534647	MKRN1	Q9UHC7	482 aa	Known RBP	15.24	■□□□□ 0.03
CTNND1-238	ENST00000534647	RRP7A	Q9Y3A4	280 aa	Known RBP	15.24	■□□□□ 0.03
CTNND1-238	ENST00000534647	PCNT	O95613	3336 aa		15.24	■□□□□ 0.03
CTNND1-238	ENST00000534647	GIGYF2	Q6Y7W6	1299 aa	Known RBP	15.23	■□□□□ 0.03
CTNND1-238	ENST00000534647	NUTM1	Q86Y26	1132 aa		15.23	■□□□□ 0.03
CTNND1-238	ENST00000534647	BABAM1	Q9NWV8	329 aa		15.23	■□□□□ 0.03
CTNND1-238	ENST00000534647	LAMB4	A4D0S4	1761 aa		15.23	■□□□□ 0.03
CTNND1-238	ENST00000534647	ABCC12	Q96J65	1359 aa		15.23	■□□□□ 0.03
CTNND1-238	ENST00000534647	KDM3B	Q7LBC6	1761 aa		15.22	■□□□□ 0.03
CTNND1-238	ENST00000534647	SLC10A5	Q5PT55	438 aa		15.22	■□□□□ 0.03
CTNND1-238	ENST00000534647	SUSD4	Q5VX71	490 aa		15.22	■□□□□ 0.03
CTNND1-238	ENST00000534647	NGEF	Q8N5V2	710 aa		15.22	■□□□□ 0.03
CTNND1-238	ENST00000534647	CACNA1S	Q13698	1873 aa		15.22	■□□□□ 0.03
CTNND1-238	ENST00000534647	UBN2	Q6ZU65	1347 aa		15.21	■□□□□ 0.03
CTNND1-238	ENST00000534647	NTSR2	O95665	410 aa		15.21	■□□□□ 0.03
CTNND1-238	ENST00000534647	PARP10	Q53GL7	1025 aa		15.21	■□□□□ 0.03
CTNND1-238	ENST00000534647	EAPP	Q56P03	285 aa	Predicted RBP	15.21	■□□□□ 0.03
CTNND1-238	ENST00000534647	LRP10	Q7Z4F1	713 aa		15.21	■□□□□ 0.03
CTNND1-238	ENST00000534647	HS6ST3	Q8IZP7	471 aa		15.21	■□□□□ 0.03
CTNND1-238	ENST00000534647	CNTROB	Q8N137	903 aa		15.21	■□□□□ 0.03
CTNND1-238	ENST00000534647	RPGR	Q92834	1020 aa	Known RBP	15.21	■□□□□ 0.03
CTNND1-238	ENST00000534647	RBM17	Q96I25	401 aa	Known RBP	15.21	■□□□□ 0.03
CTNND1-238	ENST00000534647	VPS33B	Q9H267	617 aa		15.21	■□□□□ 0.03
CTNND1-238	ENST00000534647	ADAMTSL1	Q8N6G6	1762 aa		15.21	■□□□□ 0.02
CTNND1-238	ENST00000534647	MYL6B	P14649	208 aa		15.2	■□□□□ 0.02
CTNND1-238	ENST00000534647	VEGFB	P49765	207 aa		15.2	■□□□□ 0.02
CTNND1-238	ENST00000534647	EIF6	P56537	245 aa	Known RBP	15.2	■□□□□ 0.02
CTNND1-238	ENST00000534647	PDIA6	Q15084	440 aa		15.2	■□□□□ 0.02
CTNND1-238	ENST00000534647	PPP1R42	Q7Z4L9	355 aa		15.2	■□□□□ 0.02
CTNND1-238	ENST00000534647	THUMPD2	Q9BTF0	503 aa	Known RBP	15.2	■□□□□ 0.02
CTNND1-238	ENST00000534647	PRDM10	Q9NQV6	1147 aa		15.2	■□□□□ 0.02
CTNND1-238	ENST00000534647	CLEC11A	Q9Y240	323 aa		15.2	■□□□□ 0.02
CTNND1-238	ENST00000534647	RNF123	Q5XPI4	1314 aa		15.19	■□□□□ 0.02
CTNND1-238	ENST00000534647	RASSF10	A6NK89	507 aa		15.19	■□□□□ 0.02
CTNND1-238	ENST00000534647	GPT	P24298	496 aa		15.19	■□□□□ 0.02
CTNND1-238	ENST00000534647	ZBTB3	Q9H5J0	574 aa		15.19	■□□□□ 0.02
CTNND1-238	ENST00000534647	NUP98	P52948	1817 aa		15.19	■□□□□ 0.02
CTNND1-238	ENST00000534647	MAPK8IP3	Q9UPT6	1336 aa		15.18	■□□□□ 0.02
CTNND1-238	ENST00000534647	FOXN1	O15353	648 aa		15.18	■□□□□ 0.02
CTNND1-238	ENST00000534647	NLRP3	Q96P20	1036 aa		15.18	■□□□□ 0.02
CTNND1-238	ENST00000534647	WBP1L	Q9NX94	342 aa		15.18	■□□□□ 0.02
CTNND1-238	ENST00000534647	DLG5	Q8TDM6	1919 aa		15.17	■□□□□ 0.02
CTNND1-238	ENST00000534647	PPEF1	O14829	653 aa	Predicted RBP	15.17	■□□□□ 0.02
CTNND1-238	ENST00000534647	CAPN15	O75808	1086 aa		15.17	■□□□□ 0.02
CTNND1-238	ENST00000534647	DEFB115	Q30KQ5	88 aa		15.17	■□□□□ 0.02
CTNND1-238	ENST00000534647	MAP1S	Q66K74	1059 aa	Predicted RBP	15.17	■□□□□ 0.02
CTNND1-238	ENST00000534647	LARGE2	Q8N3Y3	721 aa		15.17	■□□□□ 0.02
CTNND1-238	ENST00000534647	RTFDC1	Q9BY42	306 aa	Predicted RBP	15.17	■□□□□ 0.02
CTNND1-238	ENST00000534647	TSPYL4	Q9UJ04	414 aa		15.17	■□□□□ 0.02
CTNND1-238	ENST00000534647	ATP6V0A2	Q9Y487	856 aa		15.17	■□□□□ 0.02
CTNND1-238	ENST00000534647	COL4A5	P29400	1685 aa		15.16	■□□□□ 0.02
CTNND1-238	ENST00000534647	LMOD1	P29536	600 aa	Predicted RBP	15.16	■□□□□ 0.02
CTNND1-238	ENST00000534647	CTCF	P49711	727 aa	Predicted RBP	15.16	■□□□□ 0.02
CTNND1-238	ENST00000534647	SCNN1D	P51172	638 aa		15.16	■□□□□ 0.02
CTNND1-238	ENST00000534647	RIPK4	P57078	832 aa		15.16	■□□□□ 0.02
CTNND1-238	ENST00000534647	USP50	Q70EL3	339 aa	Predicted RBP	15.16	■□□□□ 0.02
CTNND1-238	ENST00000534647	UTP14A	Q9BVJ6	771 aa	Known RBP	15.16	■□□□□ 0.02
CTNND1-238	ENST00000534647	BBOX1	O75936	387 aa		15.15	■□□□□ 0.02
CTNND1-238	ENST00000534647	C3orf67	Q6ZVT6	689 aa		15.15	■□□□□ 0.02
CTNND1-238	ENST00000534647	AIDA	Q96BJ3	306 aa		15.15	■□□□□ 0.02
CTNND1-238	ENST00000534647	TMX4	Q9H1E5	349 aa	Predicted RBP	15.15	■□□□□ 0.02
CTNND1-238	ENST00000534647	DDX21	Q9NR30	783 aa	Known RBP eCLIP	15.15	■□□□□ 0.02	4e-6	■□□□□ 11.2
CTNND1-238	ENST00000534647	GJA3	Q9Y6H8	435 aa		15.15	■□□□□ 0.02
CTNND1-238	ENST00000534647	EPS15	P42566	896 aa		15.14	■□□□□ 0.01
CTNND1-238	ENST00000534647	LMOD3	Q0VAK6	560 aa		15.14	■□□□□ 0.01
CTNND1-238	ENST00000534647	RALBP1	Q15311	655 aa		15.14	■□□□□ 0.01
CTNND1-238	ENST00000534647	HSP90AB3P	Q58FF7	597 aa		15.14	■□□□□ 0.01

Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms