RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 CRY2Q49AN0 593 aa16.98■□□□□ 0.31
CPSF1-204ENST00000529288 PARP10Q53GL7 1025 aa16.98■□□□□ 0.31
CPSF1-204ENST00000529288 CHADLQ6NUI6 762 aa16.98■□□□□ 0.31
CPSF1-204ENST00000529288 NLRP3Q96P20 1036 aa16.98■□□□□ 0.31
CPSF1-204ENST00000529288 CACNA1SQ13698 1873 aa16.97■□□□□ 0.31
CPSF1-204ENST00000529288 CCDC88AQ3V6T2 1871 aa16.97■□□□□ 0.31
CPSF1-204ENST00000529288 IQCA1LA6NCM1 817 aa16.97■□□□□ 0.31
CPSF1-204ENST00000529288 EAPPQ56P03 285 aaPredicted RBP16.97■□□□□ 0.31
CPSF1-204ENST00000529288 C3orf67Q6ZVT6 689 aa16.97■□□□□ 0.31
CPSF1-204ENST00000529288 JDP2Q8WYK2 163 aa16.97■□□□□ 0.31
CPSF1-204ENST00000529288 TMX4Q9H1E5 349 aaPredicted RBP16.97■□□□□ 0.31
CPSF1-204ENST00000529288 TRIM35Q9UPQ4 493 aa16.97■□□□□ 0.31
CPSF1-204ENST00000529288 CLEC11AQ9Y240 323 aa16.97■□□□□ 0.31
CPSF1-204ENST00000529288 FER1L6Q2WGJ9 1857 aa16.97■□□□□ 0.31
CPSF1-204ENST00000529288 WDR90Q96KV7 1748 aa16.96■□□□□ 0.31
CPSF1-204ENST00000529288 CHL1O00533 1208 aa16.96■□□□□ 0.31
CPSF1-204ENST00000529288 PPEF1O14829 653 aaPredicted RBP16.96■□□□□ 0.31
CPSF1-204ENST00000529288 LRP10Q7Z4F1 713 aa16.96■□□□□ 0.31
CPSF1-204ENST00000529288 GJA3Q9Y6H8 435 aa16.96■□□□□ 0.31
CPSF1-204ENST00000529288 HOXA10P31260 410 aaPredicted RBP16.95■□□□□ 0.3
CPSF1-204ENST00000529288 HSP90AB3PQ58FF7 597 aa16.95■□□□□ 0.3
CPSF1-204ENST00000529288 CC2D2BQ6DHV5 1058 aa16.95■□□□□ 0.3
CPSF1-204ENST00000529288 SLC51AQ86UW1 340 aa16.95■□□□□ 0.3
CPSF1-204ENST00000529288 TAF1DQ9H5J8 278 aaPredicted RBP16.95■□□□□ 0.3
CPSF1-204ENST00000529288 IBTKQ9P2D0 1353 aaPredicted RBP16.94■□□□□ 0.3
CPSF1-204ENST00000529288 HCLS1P14317 486 aaPredicted RBP16.94■□□□□ 0.3
CPSF1-204ENST00000529288 HDGFL1Q5TGJ6 251 aa16.94■□□□□ 0.3
CPSF1-204ENST00000529288 LARGE2Q8N3Y3 721 aa16.94■□□□□ 0.3
CPSF1-204ENST00000529288 CRAMP1Q96RY5 1269 aa16.94■□□□□ 0.3
CPSF1-204ENST00000529288 PSMD1Q99460 953 aa16.94■□□□□ 0.3
CPSF1-204ENST00000529288 DDX21Q9NR30 783 aaKnown RBP eCLIP16.94■□□□□ 0.3
CPSF1-204ENST00000529288 CHPF2Q9P2E5 772 aa16.94■□□□□ 0.3
CPSF1-204ENST00000529288 HACL1Q9UJ83 578 aa16.94■□□□□ 0.3
CPSF1-204ENST00000529288 EIF6P56537 245 aaKnown RBP16.93■□□□□ 0.3
CPSF1-204ENST00000529288 LDHDQ86WU2 507 aa16.93■□□□□ 0.3
CPSF1-204ENST00000529288 L3MBTL3Q96JM7 780 aaPredicted RBP16.93■□□□□ 0.3
CPSF1-204ENST00000529288 PRKRIP1Q9H875 184 aaPredicted RBP16.93■□□□□ 0.3
CPSF1-204ENST00000529288 TRMT112Q9UI30 125 aaKnown RBP16.93■□□□□ 0.3
CPSF1-204ENST00000529288 RNF123Q5XPI4 1314 aa16.93■□□□□ 0.3
CPSF1-204ENST00000529288 FZD9O00144 591 aa16.92■□□□□ 0.3
CPSF1-204ENST00000529288 EPHX2P34913 555 aa16.92■□□□□ 0.3
CPSF1-204ENST00000529288 TCIRG1Q13488 830 aa16.92■□□□□ 0.3
CPSF1-204ENST00000529288 NLRP10Q86W26 655 aa16.92■□□□□ 0.3
CPSF1-204ENST00000529288 JMYQ8N9B5 988 aa16.92■□□□□ 0.3
CPSF1-204ENST00000529288 SLC10A5Q5PT55 438 aa16.91■□□□□ 0.3
CPSF1-204ENST00000529288 MKRN1Q9UHC7 482 aaKnown RBP16.91■□□□□ 0.3
CPSF1-204ENST00000529288 ARFGEF2Q9Y6D5 1785 aa16.91■□□□□ 0.3
CPSF1-204ENST00000529288 NUP98P52948 1817 aa16.91■□□□□ 0.3
CPSF1-204ENST00000529288 APAF1O14727 1248 aa16.9■□□□□ 0.3
CPSF1-204ENST00000529288 PPIP5K2O43314 1243 aa16.9■□□□□ 0.3
CPSF1-204ENST00000529288 GRIPAP1Q4V328 841 aa16.9■□□□□ 0.3
CPSF1-204ENST00000529288 DUSP27Q5VZP5 1158 aa16.9■□□□□ 0.3
CPSF1-204ENST00000529288 GPC2Q8N158 579 aa16.9■□□□□ 0.3
CPSF1-204ENST00000529288 ABCC4O15439 1325 aa16.9■□□□□ 0.3
CPSF1-204ENST00000529288 RIC1Q4ADV7 1423 aa16.89■□□□□ 0.29
CPSF1-204ENST00000529288 ATP5J2-PTCD1G3V325 749 aa16.89■□□□□ 0.29
CPSF1-204ENST00000529288 ELL2O00472 640 aaPredicted RBP16.89■□□□□ 0.29
CPSF1-204ENST00000529288 LMOD1P29536 600 aaPredicted RBP16.89■□□□□ 0.29
CPSF1-204ENST00000529288 ANKRD13DQ6ZTN6 518 aa16.89■□□□□ 0.29
CPSF1-204ENST00000529288 DDX46Q7L014 1031 aaKnown RBP16.89■□□□□ 0.29
CPSF1-204ENST00000529288 NIM1KQ8IY84 436 aa16.89■□□□□ 0.29
CPSF1-204ENST00000529288 CFAP44Q96MT7 982 aa16.89■□□□□ 0.29
CPSF1-204ENST00000529288 MBIPQ9NS73 344 aa16.89■□□□□ 0.29
CPSF1-204ENST00000529288 DBF4Q9UBU7 674 aaPredicted RBP16.89■□□□□ 0.29
CPSF1-204ENST00000529288 ATP6V0A2Q9Y487 856 aa16.89■□□□□ 0.29
CPSF1-204ENST00000529288 DICER1Q9UPY3 1922 aaKnown RBP16.89■□□□□ 0.29
CPSF1-204ENST00000529288 SH3TC1Q8TE82 1336 aa16.89■□□□□ 0.29
CPSF1-204ENST00000529288 AOC3Q16853 763 aa16.88■□□□□ 0.29
CPSF1-204ENST00000529288 RTL5Q5HYW3 569 aaPredicted RBP16.88■□□□□ 0.29
CPSF1-204ENST00000529288 PNMA8AQ86V59 439 aaPredicted RBP16.88■□□□□ 0.29
CPSF1-204ENST00000529288 PLBD2Q8NHP8 589 aa16.88■□□□□ 0.29
CPSF1-204ENST00000529288 CREBZFQ9NS37 354 aa16.88■□□□□ 0.29
CPSF1-204ENST00000529288 HSPA1AP0DMV8 641 aaKnown RBP16.87■□□□□ 0.29
CPSF1-204ENST00000529288 HSPA1BP0DMV9 641 aaKnown RBP16.87■□□□□ 0.29
CPSF1-204ENST00000529288 MAP1SQ66K74 1059 aaPredicted RBP16.87■□□□□ 0.29
CPSF1-204ENST00000529288 DPP8Q6V1X1 898 aaPredicted RBP16.87■□□□□ 0.29
CPSF1-204ENST00000529288 BBOX1O75936 387 aa16.86■□□□□ 0.29
CPSF1-204ENST00000529288 HOXB7P09629 217 aa16.86■□□□□ 0.29
CPSF1-204ENST00000529288 COL13A1Q5TAT6 717 aaPredicted RBP16.86■□□□□ 0.29
CPSF1-204ENST00000529288 RIC3Q7Z5B4 369 aa16.86■□□□□ 0.29
CPSF1-204ENST00000529288 MPNDQ8N594 471 aa16.86■□□□□ 0.29
CPSF1-204ENST00000529288 SUPT20HQ8NEM7 779 aa16.86■□□□□ 0.29
CPSF1-204ENST00000529288 FAM89AQ96GI7 184 aa16.86■□□□□ 0.29
CPSF1-204ENST00000529288 HYPKQ9NX55 129 aa16.86■□□□□ 0.29
CPSF1-204ENST00000529288 SNED1Q8TER0 1413 aa16.86■□□□□ 0.29
CPSF1-204ENST00000529288 EPS15P42566 896 aa16.85■□□□□ 0.29
CPSF1-204ENST00000529288 CALD1Q05682 793 aaKnown RBP16.85■□□□□ 0.29
CPSF1-204ENST00000529288 GRAPQ13588 217 aa16.85■□□□□ 0.29
CPSF1-204ENST00000529288 SP8Q8IXZ3 490 aa16.85■□□□□ 0.29
CPSF1-204ENST00000529288 CNTROBQ8N137 903 aa16.85■□□□□ 0.29
CPSF1-204ENST00000529288 GRAPLQ8TC17 118 aaPredicted RBP16.85■□□□□ 0.29
CPSF1-204ENST00000529288 TMEM88BA6NKF7 163 aa16.84■□□□□ 0.29
CPSF1-204ENST00000529288 GNAI1P63096 354 aa16.84■□□□□ 0.29
CPSF1-204ENST00000529288 IFT57Q9NWB7 429 aa16.84■□□□□ 0.29
CPSF1-204ENST00000529288 PASKQ96RG2 1323 aa16.84■□□□□ 0.29
CPSF1-204ENST00000529288 ITGBL1O95965 494 aaPredicted RBP16.83■□□□□ 0.28
CPSF1-204ENST00000529288 COL4A5P29400 1685 aa16.83■□□□□ 0.28
CPSF1-204ENST00000529288 GOLGA2Q08379 1002 aa16.83■□□□□ 0.28
CPSF1-204ENST00000529288 ISCA1Q9BUE6 129 aa16.83■□□□□ 0.28
CPSF1-204ENST00000529288 PHAXQ9H814 394 aaKnown RBP16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms