RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 DHX8Q14562 1220 aaKnown RBP13.66□□□□□ -0.22
SYNPO-204ENST00000519664 KDM5CP41229 1560 aa13.66□□□□□ -0.22
SYNPO-204ENST00000519664 ATP10AO60312 1499 aa13.66□□□□□ -0.22
SYNPO-204ENST00000519664 KCNQ3O43525 872 aa13.66□□□□□ -0.22
SYNPO-204ENST00000519664 SYT1P21579 422 aa13.66□□□□□ -0.22
SYNPO-204ENST00000519664 HELBQ8NG08 1087 aaPredicted RBP13.66□□□□□ -0.22
SYNPO-204ENST00000519664 ZHX3Q9H4I2 956 aa13.66□□□□□ -0.22
SYNPO-204ENST00000519664 SLC3A2P08195 630 aaKnown RBP13.66□□□□□ -0.22
SYNPO-204ENST00000519664 TEX35Q5T0J7 233 aa13.66□□□□□ -0.22
SYNPO-204ENST00000519664 Q6ZUG5 572 aa13.66□□□□□ -0.22
SYNPO-204ENST00000519664 PLEKHF1Q96S99 279 aa13.66□□□□□ -0.22
SYNPO-204ENST00000519664 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.65□□□□□ -0.22
SYNPO-204ENST00000519664 TXLNAP40222 546 aa13.65□□□□□ -0.22
SYNPO-204ENST00000519664 TMX1Q9H3N1 280 aa13.65□□□□□ -0.22
SYNPO-204ENST00000519664 F13A1P00488 732 aa13.65□□□□□ -0.22
SYNPO-204ENST00000519664 PPFIBP1Q86W92 1011 aa13.65□□□□□ -0.22
SYNPO-204ENST00000519664 CCAR1Q8IX12 1150 aaKnown RBP13.65□□□□□ -0.22
SYNPO-204ENST00000519664 ANKRD18BA2A2Z9 1011 aa13.65□□□□□ -0.22
SYNPO-204ENST00000519664 ALDH1L1O75891 902 aa13.65□□□□□ -0.22
SYNPO-204ENST00000519664 NBPF6Q5VWK0 638 aa13.65□□□□□ -0.22
SYNPO-204ENST00000519664 CCDC70Q6NSX1 233 aa13.65□□□□□ -0.22
SYNPO-204ENST00000519664 NBPF4Q96M43 638 aa13.65□□□□□ -0.22
SYNPO-204ENST00000519664 SFPQP23246 707 aaKnown RBP eCLIP13.64□□□□□ -0.23
SYNPO-204ENST00000519664 LTKP29376 864 aa13.64□□□□□ -0.23
SYNPO-204ENST00000519664 TFCP2Q12800 502 aa13.64□□□□□ -0.23
SYNPO-204ENST00000519664 KLHL34Q8N239 644 aa13.64□□□□□ -0.23
SYNPO-204ENST00000519664 DDX17Q92841 729 aaKnown RBP13.64□□□□□ -0.23
SYNPO-204ENST00000519664 MAP3K5Q99683 1374 aa13.64□□□□□ -0.23
SYNPO-204ENST00000519664 ANO10Q9NW15 660 aa13.64□□□□□ -0.23
SYNPO-204ENST00000519664 SSBP05455 408 aaKnown RBP eCLIP13.64□□□□□ -0.23
SYNPO-204ENST00000519664 HMGB1P09429 215 aaKnown RBP13.64□□□□□ -0.23
SYNPO-204ENST00000519664 CBX1P83916 185 aa13.64□□□□□ -0.23
SYNPO-204ENST00000519664 CREB3L3Q68CJ9 461 aa13.64□□□□□ -0.23
SYNPO-204ENST00000519664 CCDC129Q6ZRS4 1044 aa13.64□□□□□ -0.23
SYNPO-204ENST00000519664 FAM227BQ96M60 508 aa13.64□□□□□ -0.23
SYNPO-204ENST00000519664 ZFYVE9O95405 1425 aa13.64□□□□□ -0.23
SYNPO-204ENST00000519664 KLF18A0A0U1RQI7 1052 aa13.64□□□□□ -0.23
SYNPO-204ENST00000519664 MAP3K12Q12852 859 aa13.64□□□□□ -0.23
SYNPO-204ENST00000519664 CPLX3Q8WVH0 158 aa13.64□□□□□ -0.23
SYNPO-204ENST00000519664 RBSNQ9H1K0 784 aa13.64□□□□□ -0.23
SYNPO-204ENST00000519664 SLC12A7Q9Y666 1083 aa13.64□□□□□ -0.23
SYNPO-204ENST00000519664 ERVK-7P63135 1459 aa13.64□□□□□ -0.23
SYNPO-204ENST00000519664 PTPN14Q15678 1187 aa13.64□□□□□ -0.23
SYNPO-204ENST00000519664 CAGE1Q8TC20 777 aa13.64□□□□□ -0.23
SYNPO-204ENST00000519664 EDC3Q96F86 508 aaKnown RBP13.64□□□□□ -0.23
SYNPO-204ENST00000519664 CDK5RAP3Q96JB5 506 aa13.63□□□□□ -0.23
SYNPO-204ENST00000519664 TCEAL9Q9UHQ7 104 aa13.63□□□□□ -0.23
SYNPO-204ENST00000519664 CD2BP2O95400 341 aaKnown RBP13.63□□□□□ -0.23
SYNPO-204ENST00000519664 DDX19AQ9NUU7 478 aaKnown RBP13.63□□□□□ -0.23
SYNPO-204ENST00000519664 GOLGA8AA7E2F4 631 aa13.63□□□□□ -0.23
SYNPO-204ENST00000519664 TNNT1P13805 278 aa13.63□□□□□ -0.23
SYNPO-204ENST00000519664 PDCL2Q8N4E4 241 aa13.63□□□□□ -0.23
SYNPO-204ENST00000519664 RNMTO43148 476 aaKnown RBP13.63□□□□□ -0.23
SYNPO-204ENST00000519664 ANO6Q4KMQ2 910 aa13.63□□□□□ -0.23
SYNPO-204ENST00000519664 IL17REQ8NFR9 667 aa13.63□□□□□ -0.23
SYNPO-204ENST00000519664 IP6K1Q92551 441 aa13.63□□□□□ -0.23
SYNPO-204ENST00000519664 DNAJC25Q9H1X3 360 aa13.63□□□□□ -0.23
SYNPO-204ENST00000519664 MCMDC2Q4G0Z9 681 aa13.62□□□□□ -0.23
SYNPO-204ENST00000519664 CCDC186Q7Z3E2 898 aa13.62□□□□□ -0.23
SYNPO-204ENST00000519664 ZCRB1Q8TBF4 217 aaKnown RBP13.62□□□□□ -0.23
SYNPO-204ENST00000519664 EXOC5O00471 708 aa13.62□□□□□ -0.23
SYNPO-204ENST00000519664 PDIA4P13667 645 aaKnown RBP13.62□□□□□ -0.23
SYNPO-204ENST00000519664 RXRAP19793 462 aa13.62□□□□□ -0.23
SYNPO-204ENST00000519664 MARCKSP29966 332 aaPredicted RBP13.62□□□□□ -0.23
SYNPO-204ENST00000519664 HSPA2P54652 639 aa13.62□□□□□ -0.23
SYNPO-204ENST00000519664 APOBRQ0VD83 1088 aa13.62□□□□□ -0.23
SYNPO-204ENST00000519664 HSP90B2PQ58FF3 399 aa13.62□□□□□ -0.23
SYNPO-204ENST00000519664 DYNC1I1O14576 645 aa13.62□□□□□ -0.23
SYNPO-204ENST00000519664 TMEM67Q5HYA8 995 aa13.62□□□□□ -0.23
SYNPO-204ENST00000519664 USP44Q9H0E7 712 aa13.62□□□□□ -0.23
SYNPO-204ENST00000519664 PALD1Q9ULE6 856 aa13.62□□□□□ -0.23
SYNPO-204ENST00000519664 IARSP41252 1262 aaKnown RBP13.61□□□□□ -0.23
SYNPO-204ENST00000519664 USP5P45974 858 aa13.61□□□□□ -0.23
SYNPO-204ENST00000519664 EPS15P42566 896 aa13.61□□□□□ -0.23
SYNPO-204ENST00000519664 MAGEC2Q9UBF1 373 aaPredicted RBP13.61□□□□□ -0.23
SYNPO-204ENST00000519664 SBNO2Q9Y2G9 1366 aa13.61□□□□□ -0.23
SYNPO-204ENST00000519664 EDC4Q6P2E9 1401 aaKnown RBP13.61□□□□□ -0.23
SYNPO-204ENST00000519664 CNNM3Q8NE01 707 aa13.61□□□□□ -0.23
SYNPO-204ENST00000519664 HMG20BQ9P0W2 317 aa13.61□□□□□ -0.23
SYNPO-204ENST00000519664 SLC9C2Q5TAH2 1124 aa13.61□□□□□ -0.23
SYNPO-204ENST00000519664 SLC26A6Q9BXS9 759 aa13.61□□□□□ -0.23
SYNPO-204ENST00000519664 NOL7Q9UMY1 257 aaKnown RBP13.61□□□□□ -0.23
SYNPO-204ENST00000519664 CADPS2Q86UW7 1296 aa13.6□□□□□ -0.23
SYNPO-204ENST00000519664 ACSBG1Q96GR2 724 aa13.6□□□□□ -0.23
SYNPO-204ENST00000519664 DBNDD2Q9BQY9 259 aa13.6□□□□□ -0.23
SYNPO-204ENST00000519664 TBX22Q9Y458 520 aa13.6□□□□□ -0.23
SYNPO-204ENST00000519664 CTDP1Q9Y5B0 961 aaPredicted RBP13.6□□□□□ -0.23
SYNPO-204ENST00000519664 GADD45BO75293 160 aaPredicted RBP13.6□□□□□ -0.23
SYNPO-204ENST00000519664 SMARCE1Q969G3 411 aa13.6□□□□□ -0.23
SYNPO-204ENST00000519664 CCDC43Q96MW1 224 aaKnown RBP13.6□□□□□ -0.23
SYNPO-204ENST00000519664 DDX21Q9NR30 783 aaKnown RBP eCLIP13.6□□□□□ -0.23
SYNPO-204ENST00000519664 YEATS2Q9ULM3 1422 aa13.6□□□□□ -0.23
SYNPO-204ENST00000519664 SMTNL1A8MU46 457 aa13.6□□□□□ -0.23
SYNPO-204ENST00000519664 KRT18P05783 430 aaKnown RBP13.6□□□□□ -0.23
SYNPO-204ENST00000519664 ATP2B3Q16720 1220 aa13.6□□□□□ -0.23
SYNPO-204ENST00000519664 TMC6Q7Z403 805 aa13.6□□□□□ -0.23
SYNPO-204ENST00000519664 SAMD9LQ8IVG5 1584 aa13.6□□□□□ -0.23
SYNPO-204ENST00000519664 URI1O94763 535 aaPredicted RBP13.59□□□□□ -0.23
SYNPO-204ENST00000519664 FAM89AQ96GI7 184 aa13.59□□□□□ -0.23
SYNPO-204ENST00000519664 ZNF594Q96JF6 807 aaPredicted RBP13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms