RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 CEP63Q96MT8 703 aa7.74□□□□□ -1.17
NUP54-206ENST00000508465 ZFP64Q9NPA5 681 aa7.74□□□□□ -1.17
NUP54-206ENST00000508465 STARD13Q9Y3M8 1113 aa7.74□□□□□ -1.17
NUP54-206ENST00000508465 TOP2BQ02880 1626 aa7.74□□□□□ -1.17
NUP54-206ENST00000508465 LILRB5O75023 590 aa7.73□□□□□ -1.17
NUP54-206ENST00000508465 ALBP02768 609 aa7.73□□□□□ -1.17
NUP54-206ENST00000508465 GRIK4Q16099 956 aa7.73□□□□□ -1.17
NUP54-206ENST00000508465 TBCELQ5QJ74 424 aa7.73□□□□□ -1.17
NUP54-206ENST00000508465 C1orf53Q5VUE5 145 aa7.73□□□□□ -1.17
NUP54-206ENST00000508465 C7orf43Q8WVR3 580 aa7.73□□□□□ -1.17
NUP54-206ENST00000508465 BRD7Q9NPI1 651 aa7.73□□□□□ -1.17
NUP54-206ENST00000508465 CHD1O14646 1710 aa7.72□□□□□ -1.17
NUP54-206ENST00000508465 NID1P14543 1247 aa7.72□□□□□ -1.17
NUP54-206ENST00000508465 EPHA4P54764 986 aa7.72□□□□□ -1.17
NUP54-206ENST00000508465 PSMA6P60900 246 aaKnown RBP7.72□□□□□ -1.17
NUP54-206ENST00000508465 ARTNQ5T4W7 220 aa7.72□□□□□ -1.17
NUP54-206ENST00000508465 C8orf86Q6ZUL3 223 aa7.72□□□□□ -1.17
NUP54-206ENST00000508465 NBPF11Q86T75 865 aa7.72□□□□□ -1.17
NUP54-206ENST00000508465 ALG2Q9H553 416 aa7.72□□□□□ -1.17
NUP54-206ENST00000508465 KCNH4Q9UQ05 1017 aa7.72□□□□□ -1.17
NUP54-206ENST00000508465 BIVM-ERCC5R4GMW8 1640 aa7.71□□□□□ -1.17
NUP54-206ENST00000508465 MAGI1Q96QZ7 1491 aaPredicted RBP7.71□□□□□ -1.18
NUP54-206ENST00000508465 SFI1A8K8P3 1242 aa7.71□□□□□ -1.18
NUP54-206ENST00000508465 ATP1A2P50993 1020 aa7.71□□□□□ -1.18
NUP54-206ENST00000508465 PRSS36Q5K4E3 855 aa7.71□□□□□ -1.18
NUP54-206ENST00000508465 SYNJ2O15056 1496 aa7.7□□□□□ -1.18
NUP54-206ENST00000508465 KCNQ4P56696 695 aa7.7□□□□□ -1.18
NUP54-206ENST00000508465 NRG1Q02297 640 aaPredicted RBP7.7□□□□□ -1.18
NUP54-206ENST00000508465 C20orf204Q6ZNR8 217 aa7.7□□□□□ -1.18
NUP54-206ENST00000508465 DEPDC4Q8N2C3 294 aa7.7□□□□□ -1.18
NUP54-206ENST00000508465 HCN4Q9Y3Q4 1203 aa7.7□□□□□ -1.18
NUP54-206ENST00000508465 WDR97A6NE52 1622 aa7.7□□□□□ -1.18
NUP54-206ENST00000508465 USP17L5A8MUK1 530 aa7.69□□□□□ -1.18
NUP54-206ENST00000508465 H2AFB1P0C5Y9 115 aa7.69□□□□□ -1.18
NUP54-206ENST00000508465 H2AFB2P0C5Z0 115 aa7.69□□□□□ -1.18
NUP54-206ENST00000508465 ELNP15502 786 aa7.69□□□□□ -1.18
NUP54-206ENST00000508465 RAC1P63000 192 aa7.69□□□□□ -1.18
NUP54-206ENST00000508465 MCM6Q14566 821 aa7.69□□□□□ -1.18
NUP54-206ENST00000508465 FOXD4L6Q3SYB3 417 aaPredicted RBP7.69□□□□□ -1.18
NUP54-206ENST00000508465 FOXD4L3Q6VB84 417 aaPredicted RBP7.69□□□□□ -1.18
NUP54-206ENST00000508465 RAB44Q7Z6P3 723 aaPredicted RBP7.69□□□□□ -1.18
NUP54-206ENST00000508465 TPCN2Q8NHX9 752 aa7.69□□□□□ -1.18
NUP54-206ENST00000508465 BHMTQ93088 406 aa7.69□□□□□ -1.18
NUP54-206ENST00000508465 KRTAP9-2Q9BYQ4 174 aa7.69□□□□□ -1.18
NUP54-206ENST00000508465 RIMBP3CA6NJZ7 1639 aa7.69□□□□□ -1.18
NUP54-206ENST00000508465 RIMBP3BA6NNM3 1639 aa7.69□□□□□ -1.18
NUP54-206ENST00000508465 RIMBP3Q9UFD9 1639 aa7.69□□□□□ -1.18
NUP54-206ENST00000508465 ARHGEF11O15085 1522 aa7.68□□□□□ -1.18
NUP54-206ENST00000508465 ABCA5Q8WWZ7 1642 aa7.68□□□□□ -1.18
NUP54-206ENST00000508465 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.68□□□□□ -1.18
NUP54-206ENST00000508465 HIRAP54198 1017 aaPredicted RBP7.68□□□□□ -1.18
NUP54-206ENST00000508465 SH3PXD2AQ5TCZ1 1133 aa7.68□□□□□ -1.18
NUP54-206ENST00000508465 CCDC102BQ68D86 513 aa7.68□□□□□ -1.18
NUP54-206ENST00000508465 UBE2OQ9C0C9 1292 aaKnown RBP7.68□□□□□ -1.18
NUP54-206ENST00000508465 PHACTR1Q9C0D0 580 aa7.68□□□□□ -1.18
NUP54-206ENST00000508465 EFCC1Q9HA90 598 aa7.68□□□□□ -1.18
NUP54-206ENST00000508465 COG6Q9Y2V7 657 aa7.68□□□□□ -1.18
NUP54-206ENST00000508465 RBM19Q9Y4C8 960 aaKnown RBP7.68□□□□□ -1.18
NUP54-206ENST00000508465 PBRM1Q86U86 1689 aa7.67□□□□□ -1.18
NUP54-206ENST00000508465 TBC1D8BQ0IIM8 1120 aa7.67□□□□□ -1.18
NUP54-206ENST00000508465 ADGRE1Q14246 886 aa7.67□□□□□ -1.18
NUP54-206ENST00000508465 HIF1AQ16665 826 aa7.67□□□□□ -1.18
NUP54-206ENST00000508465 LENG1Q96BZ8 264 aaPredicted RBP7.67□□□□□ -1.18
NUP54-206ENST00000508465 HSH2DQ96JZ2 352 aa7.67□□□□□ -1.18
NUP54-206ENST00000508465 SUSD3Q96L08 255 aa7.67□□□□□ -1.18
NUP54-206ENST00000508465 TSPAN10Q9H1Z9 355 aaPredicted RBP7.67□□□□□ -1.18
NUP54-206ENST00000508465 IGFLR1Q9H665 355 aa7.67□□□□□ -1.18
NUP54-206ENST00000508465 FHAD1B1AJZ9 1412 aa7.67□□□□□ -1.18
NUP54-206ENST00000508465 A0A0A0MRY4 1105 aa7.66□□□□□ -1.18
NUP54-206ENST00000508465 ZBTB7BO15156 539 aaPredicted RBP7.66□□□□□ -1.18
NUP54-206ENST00000508465 TYRO3Q06418 890 aa7.66□□□□□ -1.18
NUP54-206ENST00000508465 TXNRD3Q86VQ6 643 aa7.66□□□□□ -1.18
NUP54-206ENST00000508465 JPH1Q9HDC5 661 aaPredicted RBP7.66□□□□□ -1.18
NUP54-206ENST00000508465 KRTAP9-6A0A140TA67 174 aa7.65□□□□□ -1.18
NUP54-206ENST00000508465 M0R2N6 131 aa7.65□□□□□ -1.18
NUP54-206ENST00000508465 SELPP16109 830 aa7.65□□□□□ -1.18
NUP54-206ENST00000508465 GRIN2AQ12879 1464 aa7.65□□□□□ -1.18
NUP54-206ENST00000508465 MBTPS1Q14703 1052 aa7.65□□□□□ -1.18
NUP54-206ENST00000508465 KIF27Q86VH2 1401 aa7.65□□□□□ -1.18
NUP54-206ENST00000508465 LARGE2Q8N3Y3 721 aa7.65□□□□□ -1.18
NUP54-206ENST00000508465 PALM3A6NDB9 673 aaPredicted RBP7.64□□□□□ -1.19
NUP54-206ENST00000508465 RAD21O60216 631 aa7.64□□□□□ -1.19
NUP54-206ENST00000508465 PPP1R12BO60237 982 aaPredicted RBP7.64□□□□□ -1.19
NUP54-206ENST00000508465 POTEAQ6S8J7 498 aa7.64□□□□□ -1.19
NUP54-206ENST00000508465 PLEKHM2Q8IWE5 1019 aa7.64□□□□□ -1.19
NUP54-206ENST00000508465 ZNF280CQ8ND82 737 aa7.64□□□□□ -1.19
NUP54-206ENST00000508465 NUDT8Q8WV74 236 aa7.64□□□□□ -1.19
NUP54-206ENST00000508465 PNMA5Q96PV4 448 aa7.64□□□□□ -1.19
NUP54-206ENST00000508465 USP21Q9UK80 565 aa7.64□□□□□ -1.19
NUP54-206ENST00000508465 ERICH3Q5RHP9 1530 aa7.63□□□□□ -1.19
NUP54-206ENST00000508465 CLASP1Q7Z460 1538 aa7.63□□□□□ -1.19
NUP54-206ENST00000508465 RUSC2Q8N2Y8 1516 aa7.63□□□□□ -1.19
NUP54-206ENST00000508465 ARAP1Q96P48 1450 aa7.63□□□□□ -1.19
NUP54-206ENST00000508465 LRP8Q14114 963 aa7.63□□□□□ -1.19
NUP54-206ENST00000508465 BTLAQ7Z6A9 289 aa7.63□□□□□ -1.19
NUP54-206ENST00000508465 TP53INP1Q96A56 240 aa7.63□□□□□ -1.19
NUP54-206ENST00000508465 SLC6A14Q9UN76 642 aa7.63□□□□□ -1.19
NUP54-206ENST00000508465 CARMIL1Q5VZK9 1371 aa7.62□□□□□ -1.19
NUP54-206ENST00000508465 TTBK1Q5TCY1 1321 aaPredicted RBP7.62□□□□□ -1.19
NUP54-206ENST00000508465 RGS9O75916 674 aaPredicted RBP7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms