RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 CHADLQ6NUI6 762 aa15.14■□□□□ 0.01
HMGCS1-204ENST00000507293 SYNE4Q8N205 404 aa15.14■□□□□ 0.01
HMGCS1-204ENST00000507293 RPGRQ92834 1020 aaKnown RBP15.14■□□□□ 0.01
HMGCS1-204ENST00000507293 ADAMTSL1Q8N6G6 1762 aa15.13■□□□□ 0.01
HMGCS1-204ENST00000507293 COL4A5P29400 1685 aa15.13■□□□□ 0.01
HMGCS1-204ENST00000507293 IQCA1LA6NCM1 817 aa15.13■□□□□ 0.01
HMGCS1-204ENST00000507293 NECTIN2Q92692 538 aa15.13■□□□□ 0.01
HMGCS1-204ENST00000507293 L3MBTL3Q96JM7 780 aaPredicted RBP15.13■□□□□ 0.01
HMGCS1-204ENST00000507293 HOXA10P31260 410 aaPredicted RBP15.12■□□□□ 0.01
HMGCS1-204ENST00000507293 WDR43Q15061 677 aaKnown RBP eCLIP15.12■□□□□ 0.01
HMGCS1-204ENST00000507293 PARP10Q53GL7 1025 aa15.12■□□□□ 0.01
HMGCS1-204ENST00000507293 C3orf67Q6ZVT6 689 aa15.12■□□□□ 0.01
HMGCS1-204ENST00000507293 PPP1R42Q7Z4L9 355 aa15.12■□□□□ 0.01
HMGCS1-204ENST00000507293 KRT24Q2M2I5 525 aa15.11■□□□□ 0.01
HMGCS1-204ENST00000507293 CC2D2BQ6DHV5 1058 aa15.11■□□□□ 0.01
HMGCS1-204ENST00000507293 SLC51AQ86UW1 340 aa15.11■□□□□ 0.01
HMGCS1-204ENST00000507293 RUNDC1Q96C34 613 aa15.11■□□□□ 0.01
HMGCS1-204ENST00000507293 RBM17Q96I25 401 aaKnown RBP15.11■□□□□ 0.01
HMGCS1-204ENST00000507293 CRAMP1Q96RY5 1269 aa15.11■□□□□ 0.01
HMGCS1-204ENST00000507293 PSMD1Q99460 953 aa15.11■□□□□ 0.01
HMGCS1-204ENST00000507293 TAF1DQ9H5J8 278 aaPredicted RBP15.11■□□□□ 0.01
HMGCS1-204ENST00000507293 LAS1LQ9Y4W2 734 aaKnown RBP15.11■□□□□ 0.01
HMGCS1-204ENST00000507293 FZD9O00144 591 aa15.1■□□□□ 0.01
HMGCS1-204ENST00000507293 PPEF1O14829 653 aaPredicted RBP15.1■□□□□ 0.01
HMGCS1-204ENST00000507293 AIMP1Q12904 312 aaKnown RBP15.1■□□□□ 0.01
HMGCS1-204ENST00000507293 COPS6Q7L5N1 327 aa15.1■□□□□ 0.01
HMGCS1-204ENST00000507293 LDHDQ86WU2 507 aa15.1■□□□□ 0.01
HMGCS1-204ENST00000507293 XAGE3Q8WTP9 111 aa15.1■□□□□ 0.01
HMGCS1-204ENST00000507293 UTP14AQ9BVJ6 771 aaKnown RBP15.1■□□□□ 0.01
HMGCS1-204ENST00000507293 TRIM35Q9UPQ4 493 aa15.1■□□□□ 0.01
HMGCS1-204ENST00000507293 TAF1P21675 1872 aa15.1■□□□□ 0.01
HMGCS1-204ENST00000507293 LTBP1Q14766 1721 aa15.09■□□□□ 0.01
HMGCS1-204ENST00000507293 DDX60Q8IY21 1712 aaKnown RBP15.09■□□□□ 0.01
HMGCS1-204ENST00000507293 CHL1O00533 1208 aa15.09■□□□□ 0.01
HMGCS1-204ENST00000507293 TCERG1O14776 1098 aaKnown RBP15.09■□□□□ 0.01
HMGCS1-204ENST00000507293 HACL1Q9UJ83 578 aa15.09■□□□□ 0.01
HMGCS1-204ENST00000507293 RNF123Q5XPI4 1314 aa15.09■□□□□ 0.01
HMGCS1-204ENST00000507293 EAPPQ56P03 285 aaPredicted RBP15.08■□□□□ 0
HMGCS1-204ENST00000507293 HSP90AB3PQ58FF7 597 aa15.08■□□□□ 0
HMGCS1-204ENST00000507293 JDP2Q8WYK2 163 aa15.08■□□□□ 0
HMGCS1-204ENST00000507293 NLRP3Q96P20 1036 aa15.08■□□□□ 0
HMGCS1-204ENST00000507293 DDX21Q9NR30 783 aaKnown RBP eCLIP15.08■□□□□ 0
HMGCS1-204ENST00000507293 ADAMTS8Q9UP79 889 aa15.08■□□□□ 0
HMGCS1-204ENST00000507293 EPHX2P34913 555 aa15.07■□□□□ 0
HMGCS1-204ENST00000507293 GRIPAP1Q4V328 841 aa15.07■□□□□ 0
HMGCS1-204ENST00000507293 SLC10A5Q5PT55 438 aa15.07■□□□□ 0
HMGCS1-204ENST00000507293 NLRP10Q86W26 655 aa15.07■□□□□ 0
HMGCS1-204ENST00000507293 GPC2Q8N158 579 aa15.07■□□□□ 0
HMGCS1-204ENST00000507293 CREBZFQ9NS37 354 aa15.07■□□□□ 0
HMGCS1-204ENST00000507293 CHPF2Q9P2E5 772 aa15.07■□□□□ 0
HMGCS1-204ENST00000507293 ABCC4O15439 1325 aa15.07■□□□□ 0
HMGCS1-204ENST00000507293 PASKQ96RG2 1323 aa15.07■□□□□ 0
HMGCS1-204ENST00000507293 EIF6P56537 245 aaKnown RBP15.06■□□□□ 0
HMGCS1-204ENST00000507293 TCIRG1Q13488 830 aa15.06■□□□□ 0
HMGCS1-204ENST00000507293 HDGFL1Q5TGJ6 251 aa15.06■□□□□ 0
HMGCS1-204ENST00000507293 LARGE2Q8N3Y3 721 aa15.06■□□□□ 0
HMGCS1-204ENST00000507293 GJA3Q9Y6H8 435 aa15.06■□□□□ 0
HMGCS1-204ENST00000507293 LRRC37AA6NMS7 1700 aa15.06■□□□□ 0
HMGCS1-204ENST00000507293 HSPA1AP0DMV8 641 aaKnown RBP15.05■□□□□ -0
HMGCS1-204ENST00000507293 HSPA1BP0DMV9 641 aaKnown RBP15.05■□□□□ -0
HMGCS1-204ENST00000507293 HCLS1P14317 486 aaPredicted RBP15.05■□□□□ -0
HMGCS1-204ENST00000507293 PRKRIP1Q9H875 184 aaPredicted RBP15.05■□□□□ -0
HMGCS1-204ENST00000507293 MKRN1Q9UHC7 482 aaKnown RBP15.05■□□□□ -0
HMGCS1-204ENST00000507293 CLEC11AQ9Y240 323 aa15.05■□□□□ -0
HMGCS1-204ENST00000507293 ATP6V0A2Q9Y487 856 aa15.05■□□□□ -0
HMGCS1-204ENST00000507293 SH3TC1Q8TE82 1336 aa15.04■□□□□ -0
HMGCS1-204ENST00000507293 PPIP5K2O43314 1243 aa15.04■□□□□ -0
HMGCS1-204ENST00000507293 HOXB7P09629 217 aa15.04■□□□□ -0
HMGCS1-204ENST00000507293 COL13A1Q5TAT6 717 aaPredicted RBP15.04■□□□□ -0
HMGCS1-204ENST00000507293 PNMA8AQ86V59 439 aaPredicted RBP15.04■□□□□ -0
HMGCS1-204ENST00000507293 ZNF428Q96B54 188 aa15.04■□□□□ -0
HMGCS1-204ENST00000507293 TMX4Q9H1E5 349 aaPredicted RBP15.04■□□□□ -0
HMGCS1-204ENST00000507293 TRMT112Q9UI30 125 aaKnown RBP15.04■□□□□ -0
HMGCS1-204ENST00000507293 ITGBL1O95965 494 aaPredicted RBP15.03■□□□□ -0
HMGCS1-204ENST00000507293 AOC3Q16853 763 aa15.03■□□□□ -0
HMGCS1-204ENST00000507293 NIM1KQ8IY84 436 aa15.03■□□□□ -0
HMGCS1-204ENST00000507293 PLBD2Q8NHP8 589 aa15.03■□□□□ -0
HMGCS1-204ENST00000507293 CFAP44Q96MT7 982 aa15.03■□□□□ -0
HMGCS1-204ENST00000507293 CNTNAP1P78357 1384 aa15.02■□□□□ -0
HMGCS1-204ENST00000507293 TRPM7Q96QT4 1865 aa15.02■□□□□ -0
HMGCS1-204ENST00000507293 LMOD1P29536 600 aaPredicted RBP15.02■□□□□ -0
HMGCS1-204ENST00000507293 DUSP27Q5VZP5 1158 aa15.02■□□□□ -0
HMGCS1-204ENST00000507293 MAP1SQ66K74 1059 aaPredicted RBP15.02■□□□□ -0
HMGCS1-204ENST00000507293 MBIPQ9NS73 344 aa15.02■□□□□ -0
HMGCS1-204ENST00000507293 DBF4Q9UBU7 674 aaPredicted RBP15.02■□□□□ -0
HMGCS1-204ENST00000507293 DUOX1Q9NRD9 1551 aa15.02□□□□□ -0.01
HMGCS1-204ENST00000507293 SCNN1DP51172 638 aa15.01□□□□□ -0.01
HMGCS1-204ENST00000507293 DDX46Q7L014 1031 aaKnown RBP15.01□□□□□ -0.01
HMGCS1-204ENST00000507293 SUPT20HQ8NEM7 779 aa15.01□□□□□ -0.01
HMGCS1-204ENST00000507293 COL4A1P02462 1669 aa15□□□□□ -0.01
HMGCS1-204ENST00000507293 TMEM88BA6NKF7 163 aa15□□□□□ -0.01
HMGCS1-204ENST00000507293 ATP5J2-PTCD1G3V325 749 aa15□□□□□ -0.01
HMGCS1-204ENST00000507293 APAF1O14727 1248 aa15□□□□□ -0.01
HMGCS1-204ENST00000507293 BBOX1O75936 387 aa15□□□□□ -0.01
HMGCS1-204ENST00000507293 EPS15P42566 896 aa15□□□□□ -0.01
HMGCS1-204ENST00000507293 GRAPQ13588 217 aa15□□□□□ -0.01
HMGCS1-204ENST00000507293 DPP8Q6V1X1 898 aaPredicted RBP15□□□□□ -0.01
HMGCS1-204ENST00000507293 ANKRD13DQ6ZTN6 518 aa15□□□□□ -0.01
HMGCS1-204ENST00000507293 SP8Q8IXZ3 490 aa15□□□□□ -0.01
HMGCS1-204ENST00000507293 CNTROBQ8N137 903 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms