RNA–Protein interactions for RNA: ENST00000496363.5

USF1-207, Transcript of upstream transcription factor 1, humanhuman

TSL 2

Gene USF1, Length 990 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-207ENST00000496363 DDX10Q13206 875 aaKnown RBP17.13■□□□□ 0.33
USF1-207ENST00000496363 GIGYF2Q6Y7W6 1299 aaKnown RBP17.13■□□□□ 0.33
USF1-207ENST00000496363 RPGRQ92834 1020 aaKnown RBP17.13■□□□□ 0.33
USF1-207ENST00000496363 TAF1DQ9H5J8 278 aaPredicted RBP17.13■□□□□ 0.33
USF1-207ENST00000496363 LAMB2P55268 1798 aa17.12■□□□□ 0.33
USF1-207ENST00000496363 IQCA1LA6NCM1 817 aa17.12■□□□□ 0.33
USF1-207ENST00000496363 NECTIN2Q92692 538 aa17.12■□□□□ 0.33
USF1-207ENST00000496363 ADAMTSL1Q8N6G6 1762 aa17.11■□□□□ 0.33
USF1-207ENST00000496363 HOXA10P31260 410 aaPredicted RBP17.11■□□□□ 0.33
USF1-207ENST00000496363 NEUROD2Q15784 382 aa17.11■□□□□ 0.33
USF1-207ENST00000496363 COL13A1Q5TAT6 717 aaPredicted RBP17.11■□□□□ 0.33
USF1-207ENST00000496363 FZD9O00144 591 aa17.1■□□□□ 0.33
USF1-207ENST00000496363 TCERG1O14776 1098 aaKnown RBP17.1■□□□□ 0.33
USF1-207ENST00000496363 KRT24Q2M2I5 525 aa17.1■□□□□ 0.33
USF1-207ENST00000496363 EAPPQ56P03 285 aaPredicted RBP17.1■□□□□ 0.33
USF1-207ENST00000496363 LDHDQ86WU2 507 aa17.1■□□□□ 0.33
USF1-207ENST00000496363 PSMD1Q99460 953 aa17.1■□□□□ 0.33
USF1-207ENST00000496363 MYBBP1AQ9BQG0 1328 aaKnown RBP17.1■□□□□ 0.33
USF1-207ENST00000496363 PPEF1O14829 653 aaPredicted RBP17.09■□□□□ 0.33
USF1-207ENST00000496363 LMOD3Q0VAK6 560 aa17.09■□□□□ 0.33
USF1-207ENST00000496363 RBM17Q96I25 401 aaKnown RBP17.09■□□□□ 0.33
USF1-207ENST00000496363 BABAM1Q9NWV8 329 aa17.09■□□□□ 0.33
USF1-207ENST00000496363 MKRN1Q9UHC7 482 aaKnown RBP17.09■□□□□ 0.33
USF1-207ENST00000496363 HACL1Q9UJ83 578 aa17.09■□□□□ 0.33
USF1-207ENST00000496363 RNF123Q5XPI4 1314 aa17.09■□□□□ 0.33
USF1-207ENST00000496363 LTBP1Q14766 1721 aa17.09■□□□□ 0.33
USF1-207ENST00000496363 PASKQ96RG2 1323 aa17.08■□□□□ 0.32
USF1-207ENST00000496363 HSPA1AP0DMV8 641 aaKnown RBP17.08■□□□□ 0.32
USF1-207ENST00000496363 HSPA1BP0DMV9 641 aaKnown RBP17.08■□□□□ 0.32
USF1-207ENST00000496363 EPHX2P34913 555 aa17.08■□□□□ 0.32
USF1-207ENST00000496363 AIMP1Q12904 312 aaKnown RBP17.08■□□□□ 0.32
USF1-207ENST00000496363 PARP10Q53GL7 1025 aa17.08■□□□□ 0.32
USF1-207ENST00000496363 PPP1R42Q7Z4L9 355 aa17.08■□□□□ 0.32
USF1-207ENST00000496363 CRAMP1Q96RY5 1269 aa17.08■□□□□ 0.32
USF1-207ENST00000496363 CREBZFQ9NS37 354 aa17.08■□□□□ 0.32
USF1-207ENST00000496363 TAF1P21675 1872 aa17.07■□□□□ 0.32
USF1-207ENST00000496363 CC2D2BQ6DHV5 1058 aa17.07■□□□□ 0.32
USF1-207ENST00000496363 COPS6Q7L5N1 327 aa17.07■□□□□ 0.32
USF1-207ENST00000496363 XAGE3Q8WTP9 111 aa17.07■□□□□ 0.32
USF1-207ENST00000496363 JDP2Q8WYK2 163 aa17.07■□□□□ 0.32
USF1-207ENST00000496363 UTP14AQ9BVJ6 771 aaKnown RBP17.07■□□□□ 0.32
USF1-207ENST00000496363 TRIM35Q9UPQ4 493 aa17.07■□□□□ 0.32
USF1-207ENST00000496363 LAS1LQ9Y4W2 734 aaKnown RBP17.07■□□□□ 0.32
USF1-207ENST00000496363 GPC2Q8N158 579 aa17.06■□□□□ 0.32
USF1-207ENST00000496363 ZNF428Q96B54 188 aa17.06■□□□□ 0.32
USF1-207ENST00000496363 CLEC11AQ9Y240 323 aa17.06■□□□□ 0.32
USF1-207ENST00000496363 GJA3Q9Y6H8 435 aa17.06■□□□□ 0.32
USF1-207ENST00000496363 ABCC4O15439 1325 aa17.05■□□□□ 0.32
USF1-207ENST00000496363 CHL1O00533 1208 aa17.05■□□□□ 0.32
USF1-207ENST00000496363 ITGBL1O95965 494 aaPredicted RBP17.05■□□□□ 0.32
USF1-207ENST00000496363 SLC10A5Q5PT55 438 aa17.05■□□□□ 0.32
USF1-207ENST00000496363 LARGE2Q8N3Y3 721 aa17.05■□□□□ 0.32
USF1-207ENST00000496363 RUNDC1Q96C34 613 aa17.05■□□□□ 0.32
USF1-207ENST00000496363 NLRP3Q96P20 1036 aa17.05■□□□□ 0.32
USF1-207ENST00000496363 HCLS1P14317 486 aaPredicted RBP17.04■□□□□ 0.32
USF1-207ENST00000496363 EIF6P56537 245 aaKnown RBP17.04■□□□□ 0.32
USF1-207ENST00000496363 WDR43Q15061 677 aaKnown RBP eCLIP17.04■□□□□ 0.32
USF1-207ENST00000496363 MAP1SQ66K74 1059 aaPredicted RBP17.04■□□□□ 0.32
USF1-207ENST00000496363 NLRP10Q86W26 655 aa17.04■□□□□ 0.32
USF1-207ENST00000496363 DDX60Q8IY21 1712 aaKnown RBP17.04■□□□□ 0.32
USF1-207ENST00000496363 CNTNAP1P78357 1384 aa17.03■□□□□ 0.32
USF1-207ENST00000496363 DDX21Q9NR30 783 aaKnown RBP eCLIP17.03■□□□□ 0.32
USF1-207ENST00000496363 CHPF2Q9P2E5 772 aa17.03■□□□□ 0.32
USF1-207ENST00000496363 ADAMTS8Q9UP79 889 aa17.03■□□□□ 0.32
USF1-207ENST00000496363 ATP6V0A2Q9Y487 856 aa17.03■□□□□ 0.32
USF1-207ENST00000496363 PPIP5K2O43314 1243 aa17.02■□□□□ 0.32
USF1-207ENST00000496363 TCIRG1Q13488 830 aa17.02■□□□□ 0.32
USF1-207ENST00000496363 AOC3Q16853 763 aa17.02■□□□□ 0.32
USF1-207ENST00000496363 GRIPAP1Q4V328 841 aa17.02■□□□□ 0.32
USF1-207ENST00000496363 HSP90AB3PQ58FF7 597 aa17.02■□□□□ 0.32
USF1-207ENST00000496363 TMEM88BA6NKF7 163 aa17.01■□□□□ 0.31
USF1-207ENST00000496363 SCNN1DP51172 638 aa17.01■□□□□ 0.31
USF1-207ENST00000496363 PNMA8AQ86V59 439 aaPredicted RBP17.01■□□□□ 0.31
USF1-207ENST00000496363 NIM1KQ8IY84 436 aa17.01■□□□□ 0.31
USF1-207ENST00000496363 TNS4Q8IZW8 715 aa17.01■□□□□ 0.31
USF1-207ENST00000496363 CNTROBQ8N137 903 aa17.01■□□□□ 0.31
USF1-207ENST00000496363 TRMT112Q9UI30 125 aaKnown RBP17.01■□□□□ 0.31
USF1-207ENST00000496363 CAPN15O75808 1086 aa17■□□□□ 0.31
USF1-207ENST00000496363 EPS15P42566 896 aa17■□□□□ 0.31
USF1-207ENST00000496363 HDGFL1Q5TGJ6 251 aa17■□□□□ 0.31
USF1-207ENST00000496363 SH3TC1Q8TE82 1336 aa16.99■□□□□ 0.31
USF1-207ENST00000496363 LMOD1P29536 600 aaPredicted RBP16.99■□□□□ 0.31
USF1-207ENST00000496363 VEGFBP49765 207 aa16.99■□□□□ 0.31
USF1-207ENST00000496363 TMX4Q9H1E5 349 aaPredicted RBP16.99■□□□□ 0.31
USF1-207ENST00000496363 COL4A1P02462 1669 aa16.98■□□□□ 0.31
USF1-207ENST00000496363 FMR1Q06787 632 aaKnown RBP eCLIP16.98■□□□□ 0.31
USF1-207ENST00000496363 LRRC37AA6NMS7 1700 aa16.98■□□□□ 0.31
USF1-207ENST00000496363 DUOX1Q9NRD9 1551 aa16.98■□□□□ 0.31
USF1-207ENST00000496363 TRPM7Q96QT4 1865 aa16.97■□□□□ 0.31
USF1-207ENST00000496363 ATP5J2-PTCD1G3V325 749 aa16.97■□□□□ 0.31
USF1-207ENST00000496363 BBOX1O75936 387 aa16.97■□□□□ 0.31
USF1-207ENST00000496363 DUSP27Q5VZP5 1158 aa16.97■□□□□ 0.31
USF1-207ENST00000496363 DPP8Q6V1X1 898 aaPredicted RBP16.97■□□□□ 0.31
USF1-207ENST00000496363 DDX46Q7L014 1031 aaKnown RBP16.97■□□□□ 0.31
USF1-207ENST00000496363 SP8Q8IXZ3 490 aa16.97■□□□□ 0.31
USF1-207ENST00000496363 PLBD2Q8NHP8 589 aa16.97■□□□□ 0.31
USF1-207ENST00000496363 RTFDC1Q9BY42 306 aaPredicted RBP16.97■□□□□ 0.31
USF1-207ENST00000496363 PRKRIP1Q9H875 184 aaPredicted RBP16.97■□□□□ 0.31
USF1-207ENST00000496363 MBIPQ9NS73 344 aa16.97■□□□□ 0.31
USF1-207ENST00000496363 FOXN1O15353 648 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms