RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 ALDH1B1P30837 517 aa16.67■□□□□ 0.26
SKA1-205ENST00000494518 IARSP41252 1262 aaKnown RBP16.67■□□□□ 0.26
SKA1-205ENST00000494518 SUSD4Q5VX71 490 aa16.67■□□□□ 0.26
SKA1-205ENST00000494518 RTKN2Q8IZC4 609 aa16.67■□□□□ 0.26
SKA1-205ENST00000494518 ANKRD36CQ5JPF3 1778 aa16.66■□□□□ 0.26
SKA1-205ENST00000494518 RPGRQ92834 1020 aaKnown RBP16.66■□□□□ 0.26
SKA1-205ENST00000494518 L3MBTL3Q96JM7 780 aaPredicted RBP16.66■□□□□ 0.26
SKA1-205ENST00000494518 CLEC11AQ9Y240 323 aa16.66■□□□□ 0.26
SKA1-205ENST00000494518 LAMB2P55268 1798 aa16.66■□□□□ 0.26
SKA1-205ENST00000494518 RNF123Q5XPI4 1314 aa16.66■□□□□ 0.26
SKA1-205ENST00000494518 SNED1Q8TER0 1413 aa16.65■□□□□ 0.26
SKA1-205ENST00000494518 ADAMTSL1Q8N6G6 1762 aa16.65■□□□□ 0.26
SKA1-205ENST00000494518 SLC4A2P04920 1241 aa16.65■□□□□ 0.26
SKA1-205ENST00000494518 RIPK4P57078 832 aa16.65■□□□□ 0.26
SKA1-205ENST00000494518 CRY2Q49AN0 593 aa16.65■□□□□ 0.26
SKA1-205ENST00000494518 C3orf67Q6ZVT6 689 aa16.65■□□□□ 0.26
SKA1-205ENST00000494518 LDHDQ86WU2 507 aa16.65■□□□□ 0.26
SKA1-205ENST00000494518 NECTIN2Q92692 538 aa16.65■□□□□ 0.26
SKA1-205ENST00000494518 CREBZFQ9NS37 354 aa16.65■□□□□ 0.26
SKA1-205ENST00000494518 TAF1P21675 1872 aa16.65■□□□□ 0.26
SKA1-205ENST00000494518 NTSR2O95665 410 aa16.64■□□□□ 0.25
SKA1-205ENST00000494518 PROSER3Q2NL68 480 aa16.64■□□□□ 0.25
SKA1-205ENST00000494518 TNS4Q8IZW8 715 aa16.64■□□□□ 0.25
SKA1-205ENST00000494518 PNNQ9H307 717 aaKnown RBP16.64■□□□□ 0.25
SKA1-205ENST00000494518 HACL1Q9UJ83 578 aa16.64■□□□□ 0.25
SKA1-205ENST00000494518 LTBP1Q14766 1721 aa16.64■□□□□ 0.25
SKA1-205ENST00000494518 EPHX2P34913 555 aa16.63■□□□□ 0.25
SKA1-205ENST00000494518 CCDC146Q8IYE0 955 aa16.63■□□□□ 0.25
SKA1-205ENST00000494518 ZNF34Q8IZ26 560 aa16.63■□□□□ 0.25
SKA1-205ENST00000494518 GJA3Q9Y6H8 435 aa16.63■□□□□ 0.25
SKA1-205ENST00000494518 IBTKQ9P2D0 1353 aaPredicted RBP16.63■□□□□ 0.25
SKA1-205ENST00000494518 FZD9O00144 591 aa16.62■□□□□ 0.25
SKA1-205ENST00000494518 PPEF1O14829 653 aaPredicted RBP16.62■□□□□ 0.25
SKA1-205ENST00000494518 NEUROD2Q15784 382 aa16.62■□□□□ 0.25
SKA1-205ENST00000494518 GIGYF2Q6Y7W6 1299 aaKnown RBP16.62■□□□□ 0.25
SKA1-205ENST00000494518 ZNF428Q96B54 188 aa16.62■□□□□ 0.25
SKA1-205ENST00000494518 PSMD1Q99460 953 aa16.62■□□□□ 0.25
SKA1-205ENST00000494518 PASKQ96RG2 1323 aa16.62■□□□□ 0.25
SKA1-205ENST00000494518 RIC1Q4ADV7 1423 aa16.62■□□□□ 0.25
SKA1-205ENST00000494518 AIMP1Q12904 312 aaKnown RBP16.61■□□□□ 0.25
SKA1-205ENST00000494518 PDIA6Q15084 440 aa16.61■□□□□ 0.25
SKA1-205ENST00000494518 MAP1SQ66K74 1059 aaPredicted RBP16.61■□□□□ 0.25
SKA1-205ENST00000494518 LRP10Q7Z4F1 713 aa16.61■□□□□ 0.25
SKA1-205ENST00000494518 JDP2Q8WYK2 163 aa16.61■□□□□ 0.25
SKA1-205ENST00000494518 RBM17Q96I25 401 aaKnown RBP16.61■□□□□ 0.25
SKA1-205ENST00000494518 ERBB4Q15303 1308 aa16.61■□□□□ 0.25
SKA1-205ENST00000494518 HOXA10P31260 410 aaPredicted RBP16.6■□□□□ 0.25
SKA1-205ENST00000494518 TMPOP42166 694 aaKnown RBP16.6■□□□□ 0.25
SKA1-205ENST00000494518 KRT24Q2M2I5 525 aa16.6■□□□□ 0.25
SKA1-205ENST00000494518 PPP1R42Q7Z4L9 355 aa16.6■□□□□ 0.25
SKA1-205ENST00000494518 LARGE2Q8N3Y3 721 aa16.6■□□□□ 0.25
SKA1-205ENST00000494518 CNTNAP1P78357 1384 aa16.6■□□□□ 0.25
SKA1-205ENST00000494518 ITGBL1O95965 494 aaPredicted RBP16.59■□□□□ 0.25
SKA1-205ENST00000494518 EIF6P56537 245 aaKnown RBP16.59■□□□□ 0.25
SKA1-205ENST00000494518 GPC2Q8N158 579 aa16.59■□□□□ 0.25
SKA1-205ENST00000494518 LAS1LQ9Y4W2 734 aaKnown RBP16.59■□□□□ 0.25
SKA1-205ENST00000494518 TMEM88BA6NKF7 163 aa16.58■□□□□ 0.24
SKA1-205ENST00000494518 DDX10Q13206 875 aaKnown RBP16.58■□□□□ 0.24
SKA1-205ENST00000494518 RALBP1Q15311 655 aa16.58■□□□□ 0.24
SKA1-205ENST00000494518 PARP10Q53GL7 1025 aa16.58■□□□□ 0.24
SKA1-205ENST00000494518 CC2D2BQ6DHV5 1058 aa16.58■□□□□ 0.24
SKA1-205ENST00000494518 XAGE3Q8WTP9 111 aa16.58■□□□□ 0.24
SKA1-205ENST00000494518 CRAMP1Q96RY5 1269 aa16.58■□□□□ 0.24
SKA1-205ENST00000494518 UTP14AQ9BVJ6 771 aaKnown RBP16.58■□□□□ 0.24
SKA1-205ENST00000494518 ABCC4O15439 1325 aa16.57■□□□□ 0.24
SKA1-205ENST00000494518 HCLS1P14317 486 aaPredicted RBP16.57■□□□□ 0.24
SKA1-205ENST00000494518 POTEHQ6S545 545 aa16.57■□□□□ 0.24
SKA1-205ENST00000494518 COPS6Q7L5N1 327 aa16.57■□□□□ 0.24
SKA1-205ENST00000494518 CNTROBQ8N137 903 aa16.57■□□□□ 0.24
SKA1-205ENST00000494518 NLRP3Q96P20 1036 aa16.57■□□□□ 0.24
SKA1-205ENST00000494518 TRPM7Q96QT4 1865 aa16.56■□□□□ 0.24
SKA1-205ENST00000494518 PPIP5K2O43314 1243 aa16.56■□□□□ 0.24
SKA1-205ENST00000494518 LMOD1P29536 600 aaPredicted RBP16.56■□□□□ 0.24
SKA1-205ENST00000494518 VEGFBP49765 207 aa16.56■□□□□ 0.24
SKA1-205ENST00000494518 FMR1Q06787 632 aaKnown RBP eCLIP16.56■□□□□ 0.24
SKA1-205ENST00000494518 LMOD3Q0VAK6 560 aa16.56■□□□□ 0.24
SKA1-205ENST00000494518 AOC3Q16853 763 aa16.56■□□□□ 0.24
SKA1-205ENST00000494518 PNMA8AQ86V59 439 aaPredicted RBP16.56■□□□□ 0.24
SKA1-205ENST00000494518 NIM1KQ8IY84 436 aa16.56■□□□□ 0.24
SKA1-205ENST00000494518 U3KPZ7 1027 aaPredicted RBP16.56■□□□□ 0.24
SKA1-205ENST00000494518 DDX60Q8IY21 1712 aaKnown RBP16.56■□□□□ 0.24
SKA1-205ENST00000494518 FOXN1O15353 648 aa16.55■□□□□ 0.24
SKA1-205ENST00000494518 EPS15P42566 896 aa16.55■□□□□ 0.24
SKA1-205ENST00000494518 SCNN1DP51172 638 aa16.55■□□□□ 0.24
SKA1-205ENST00000494518 MYBBP1AQ9BQG0 1328 aaKnown RBP16.54■□□□□ 0.24
SKA1-205ENST00000494518 NLRP10Q86W26 655 aa16.54■□□□□ 0.24
SKA1-205ENST00000494518 TMX4Q9H1E5 349 aaPredicted RBP16.54■□□□□ 0.24
SKA1-205ENST00000494518 CHPF2Q9P2E5 772 aa16.54■□□□□ 0.24
SKA1-205ENST00000494518 SLC10A5Q5PT55 438 aa16.53■□□□□ 0.24
SKA1-205ENST00000494518 BABAM1Q9NWV8 329 aa16.53■□□□□ 0.24
SKA1-205ENST00000494518 TRMT112Q9UI30 125 aaKnown RBP16.53■□□□□ 0.24
SKA1-205ENST00000494518 ABT1Q9ULW3 272 aaKnown RBP16.53■□□□□ 0.24
SKA1-205ENST00000494518 TRIM35Q9UPQ4 493 aa16.53■□□□□ 0.24
SKA1-205ENST00000494518 ATP6V0A2Q9Y487 856 aa16.53■□□□□ 0.24
SKA1-205ENST00000494518 WDR43Q15061 677 aaKnown RBP eCLIP16.52■□□□□ 0.24
SKA1-205ENST00000494518 GRIPAP1Q4V328 841 aa16.52■□□□□ 0.24
SKA1-205ENST00000494518 HSP90AB3PQ58FF7 597 aa16.52■□□□□ 0.24
SKA1-205ENST00000494518 DDX21Q9NR30 783 aaKnown RBP eCLIP16.52■□□□□ 0.24
SKA1-205ENST00000494518 TRAF5O00463 557 aa16.51■□□□□ 0.23
SKA1-205ENST00000494518 CHL1O00533 1208 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms