RNA–Protein interactions for RNA: ENST00000480956.1

LSM5-210, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 3

Gene LSM5, Length 1,736 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM5-210	ENST00000480956	SPG7	Q9UQ90	795 aa		10.49	□□□□□ -0.73
LSM5-210	ENST00000480956	FAM221B	A6H8Z2	402 aa		10.48	□□□□□ -0.73
LSM5-210	ENST00000480956	ZEB1	P37275	1124 aa	Predicted RBP	10.48	□□□□□ -0.73
LSM5-210	ENST00000480956	C16orf46	Q6P387	395 aa		10.48	□□□□□ -0.73
LSM5-210	ENST00000480956	LRP10	Q7Z4F1	713 aa		10.48	□□□□□ -0.73
LSM5-210	ENST00000480956	NAP1L4	Q99733	375 aa	Known RBP	10.48	□□□□□ -0.73
LSM5-210	ENST00000480956	OCSTAMP	Q9BR26	566 aa		10.48	□□□□□ -0.73
LSM5-210	ENST00000480956	TSR3	Q9UJK0	312 aa	Known RBP	10.48	□□□□□ -0.73
LSM5-210	ENST00000480956	ESYT3	A0FGR9	886 aa		10.47	□□□□□ -0.73
LSM5-210	ENST00000480956	CCDC85C	A6NKD9	419 aa		10.47	□□□□□ -0.73
LSM5-210	ENST00000480956	NOS2	P35228	1153 aa		10.47	□□□□□ -0.73
LSM5-210	ENST00000480956	PGBD3	Q8N328	593 aa		10.47	□□□□□ -0.73
LSM5-210	ENST00000480956	CFHR5	Q9BXR6	569 aa		10.47	□□□□□ -0.73
LSM5-210	ENST00000480956	FBXO9	Q9UK97	447 aa	Predicted RBP	10.47	□□□□□ -0.73
LSM5-210	ENST00000480956		V9GY48	417 aa	Predicted RBP	10.47	□□□□□ -0.73
LSM5-210	ENST00000480956	BDNF	P23560	247 aa		10.47	□□□□□ -0.73
LSM5-210	ENST00000480956	RAVER1	Q8IY67	606 aa	Known RBP	10.47	□□□□□ -0.73
LSM5-210	ENST00000480956	KLF4	O43474	513 aa		10.46	□□□□□ -0.74
LSM5-210	ENST00000480956	RNF40	O75150	1001 aa		10.46	□□□□□ -0.74
LSM5-210	ENST00000480956	KRT18	P05783	430 aa	Known RBP	10.46	□□□□□ -0.74
LSM5-210	ENST00000480956	AMOTL1	Q8IY63	956 aa		10.46	□□□□□ -0.74
LSM5-210	ENST00000480956	SWAP70	Q9UH65	585 aa		10.46	□□□□□ -0.74
LSM5-210	ENST00000480956	ESPN	B1AK53	854 aa		10.45	□□□□□ -0.74
LSM5-210	ENST00000480956	ETFB	P38117	255 aa		10.45	□□□□□ -0.74
LSM5-210	ENST00000480956	PPP4C	P60510	307 aa		10.45	□□□□□ -0.74
LSM5-210	ENST00000480956	BRD3	Q15059	726 aa		10.45	□□□□□ -0.74
LSM5-210	ENST00000480956	ZRSR2	Q15696	482 aa	Known RBP	10.45	□□□□□ -0.74
LSM5-210	ENST00000480956	SAMD3	Q8N6K7	520 aa		10.45	□□□□□ -0.74
LSM5-210	ENST00000480956	ADAM32	Q8TC27	787 aa		10.45	□□□□□ -0.74
LSM5-210	ENST00000480956	TRPM4	Q8TD43	1214 aa		10.45	□□□□□ -0.74
LSM5-210	ENST00000480956	FEZ1	Q99689	392 aa		10.45	□□□□□ -0.74
LSM5-210	ENST00000480956	SAP130	Q9H0E3	1048 aa		10.45	□□□□□ -0.74
LSM5-210	ENST00000480956	MRVI1	Q9Y6F6	885 aa		10.45	□□□□□ -0.74
LSM5-210	ENST00000480956	USP31	Q70CQ4	1352 aa		10.45	□□□□□ -0.74
LSM5-210	ENST00000480956	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	10.44	□□□□□ -0.74
LSM5-210	ENST00000480956	CNTN3	Q9P232	1028 aa		10.44	□□□□□ -0.74
LSM5-210	ENST00000480956	NASP	P49321	788 aa	Predicted RBP	10.44	□□□□□ -0.74
LSM5-210	ENST00000480956	LMOD3	Q0VAK6	560 aa		10.44	□□□□□ -0.74
LSM5-210	ENST00000480956	VPS72	Q15906	364 aa		10.44	□□□□□ -0.74
LSM5-210	ENST00000480956	CNPY4	Q8N129	248 aa		10.44	□□□□□ -0.74
LSM5-210	ENST00000480956	TMX4	Q9H1E5	349 aa	Predicted RBP	10.44	□□□□□ -0.74
LSM5-210	ENST00000480956	STIM2	Q9P246	746 aa		10.44	□□□□□ -0.74
LSM5-210	ENST00000480956	EXOC5	O00471	708 aa		10.43	□□□□□ -0.74
LSM5-210	ENST00000480956	LIG1	P18858	919 aa		10.43	□□□□□ -0.74
LSM5-210	ENST00000480956	CTH	P32929	405 aa		10.43	□□□□□ -0.74
LSM5-210	ENST00000480956	HDGF	P51858	240 aa	Known RBP	10.43	□□□□□ -0.74
LSM5-210	ENST00000480956	PPP2R5A	Q15172	486 aa		10.43	□□□□□ -0.74
LSM5-210	ENST00000480956		Q3C1V9	767 aa		10.43	□□□□□ -0.74
LSM5-210	ENST00000480956	BRDT	Q58F21	947 aa	Predicted RBP	10.43	□□□□□ -0.74
LSM5-210	ENST00000480956	HNRNPLL	Q8WVV9	542 aa	Known RBP	10.43	□□□□□ -0.74
LSM5-210	ENST00000480956	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	10.43	□□□□□ -0.74
LSM5-210	ENST00000480956	R3HCC1	Q9Y3T6	440 aa	Known RBP	10.43	□□□□□ -0.74
LSM5-210	ENST00000480956	IFRD1	O00458	451 aa	Predicted RBP	10.42	□□□□□ -0.74
LSM5-210	ENST00000480956	USP4	Q13107	963 aa		10.42	□□□□□ -0.74
LSM5-210	ENST00000480956	SYCP2L	Q5T4T6	812 aa		10.42	□□□□□ -0.74
LSM5-210	ENST00000480956	PPP4R4	Q6NUP7	873 aa		10.42	□□□□□ -0.74
LSM5-210	ENST00000480956	C16orf86	Q6ZW13	317 aa		10.42	□□□□□ -0.74
LSM5-210	ENST00000480956	LILRB2	Q8N423	598 aa		10.42	□□□□□ -0.74
LSM5-210	ENST00000480956	ARMC2	Q8NEN0	867 aa		10.42	□□□□□ -0.74
LSM5-210	ENST00000480956	PKNOX2	Q96KN3	472 aa		10.42	□□□□□ -0.74
LSM5-210	ENST00000480956	CSRNP1	Q96S65	589 aa		10.42	□□□□□ -0.74
LSM5-210	ENST00000480956	HCST	Q9UBK5	93 aa		10.42	□□□□□ -0.74
LSM5-210	ENST00000480956	CCER2	I3L3R5	266 aa		10.41	□□□□□ -0.74
LSM5-210	ENST00000480956	RGS20	O76081	388 aa		10.41	□□□□□ -0.74
LSM5-210	ENST00000480956	CFH	P08603	1231 aa		10.41	□□□□□ -0.74
LSM5-210	ENST00000480956	TAF1C	Q15572	869 aa	Predicted RBP	10.41	□□□□□ -0.74
LSM5-210	ENST00000480956	SCG3	Q8WXD2	468 aa	Known RBP	10.41	□□□□□ -0.74
LSM5-210	ENST00000480956	DNAJC7	Q99615	494 aa		10.41	□□□□□ -0.74
LSM5-210	ENST00000480956	JADE2	Q9NQC1	790 aa		10.41	□□□□□ -0.74
LSM5-210	ENST00000480956	TMEM260	Q9NX78	707 aa		10.41	□□□□□ -0.74
LSM5-210	ENST00000480956	TSPAN6	O43657	245 aa		10.41	□□□□□ -0.74
LSM5-210	ENST00000480956	HSP90AA1	P07900	732 aa	Known RBP	10.41	□□□□□ -0.74
LSM5-210	ENST00000480956	USP5	P45974	858 aa		10.41	□□□□□ -0.74
LSM5-210	ENST00000480956	SLC4A3	P48751	1232 aa		10.41	□□□□□ -0.74
LSM5-210	ENST00000480956	CDKN1C	P49918	316 aa	Predicted RBP	10.41	□□□□□ -0.74
LSM5-210	ENST00000480956	NFE2	Q16621	373 aa	Predicted RBP	10.41	□□□□□ -0.74
LSM5-210	ENST00000480956	DZIP3	Q86Y13	1208 aa	Known RBP	10.41	□□□□□ -0.74
LSM5-210	ENST00000480956	SERBP1	Q8NC51	408 aa	Known RBP eCLIP	10.41	□□□□□ -0.74
LSM5-210	ENST00000480956	NKX2-3	Q8TAU0	364 aa		10.41	□□□□□ -0.74
LSM5-210	ENST00000480956	SLC39A13	Q96H72	371 aa		10.41	□□□□□ -0.74
LSM5-210	ENST00000480956	ZNF512B	Q96KM6	892 aa	Predicted RBP	10.41	□□□□□ -0.74
LSM5-210	ENST00000480956	ARHGAP9	Q9BRR9	750 aa		10.41	□□□□□ -0.74
LSM5-210	ENST00000480956	ATP8A1	Q9Y2Q0	1164 aa		10.41	□□□□□ -0.74
LSM5-210	ENST00000480956	FOS	P01100	380 aa	Predicted RBP	10.4	□□□□□ -0.74
LSM5-210	ENST00000480956	MYL1	P05976	194 aa		10.4	□□□□□ -0.74
LSM5-210	ENST00000480956	CD53	P19397	219 aa		10.4	□□□□□ -0.74
LSM5-210	ENST00000480956	MCC	P23508	829 aa		10.4	□□□□□ -0.74
LSM5-210	ENST00000480956	POU5F1B	Q06416	359 aa		10.4	□□□□□ -0.74
LSM5-210	ENST00000480956	NBPF14	Q5TI25	921 aa		10.4	□□□□□ -0.74
LSM5-210	ENST00000480956	ERMP1	Q7Z2K6	904 aa		10.4	□□□□□ -0.74
LSM5-210	ENST00000480956	KRT26	Q7Z3Y9	468 aa		10.4	□□□□□ -0.74
LSM5-210	ENST00000480956	GJD3	Q8N144	294 aa		10.4	□□□□□ -0.74
LSM5-210	ENST00000480956	SPON2	Q9BUD6	331 aa		10.4	□□□□□ -0.74
LSM5-210	ENST00000480956	ARNT2	Q9HBZ2	717 aa		10.4	□□□□□ -0.74
LSM5-210	ENST00000480956	STRIP2	Q9ULQ0	834 aa		10.4	□□□□□ -0.74
LSM5-210	ENST00000480956	CNGA1	P29973	690 aa		10.39	□□□□□ -0.75
LSM5-210	ENST00000480956	MEI1	Q5TIA1	1274 aa		10.39	□□□□□ -0.75
LSM5-210	ENST00000480956	ZBTB33	Q86T24	672 aa		10.39	□□□□□ -0.75
LSM5-210	ENST00000480956	JAML	Q86YT9	394 aa		10.39	□□□□□ -0.75
LSM5-210	ENST00000480956	ABTB2	Q8N961	1025 aa		10.39	□□□□□ -0.75

Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms