RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 XAGE3Q8WTP9 111 aa14.82□□□□□ -0.04
PTPRF-212ENST00000477970 LSG1Q9H089 658 aaKnown RBP14.82□□□□□ -0.04
PTPRF-212ENST00000477970 PLEKHG5O94827 1062 aa14.82□□□□□ -0.04
PTPRF-212ENST00000477970 BAG4O95429 457 aaKnown RBP14.82□□□□□ -0.04
PTPRF-212ENST00000477970 RABL6Q3YEC7 729 aaPredicted RBP14.82□□□□□ -0.04
PTPRF-212ENST00000477970 KCNB2Q92953 911 aa14.82□□□□□ -0.04
PTPRF-212ENST00000477970 TNS1Q9HBL0 1735 aaKnown RBP14.82□□□□□ -0.04
PTPRF-212ENST00000477970 SBF2Q86WG5 1849 aa14.82□□□□□ -0.04
PTPRF-212ENST00000477970 GOLGA6L3A6NEY3 463 aa14.82□□□□□ -0.04
PTPRF-212ENST00000477970 RUFY2Q8WXA3 655 aa14.82□□□□□ -0.04
PTPRF-212ENST00000477970 PALD1Q9ULE6 856 aa14.82□□□□□ -0.04
PTPRF-212ENST00000477970 HIP1O00291 1037 aa14.81□□□□□ -0.04
PTPRF-212ENST00000477970 NEK4P51957 841 aa14.81□□□□□ -0.04
PTPRF-212ENST00000477970 CABP4P57796 275 aa14.81□□□□□ -0.04
PTPRF-212ENST00000477970 OS9Q13438 667 aaPredicted RBP14.81□□□□□ -0.04
PTPRF-212ENST00000477970 ANKRD13DQ6ZTN6 518 aa14.81□□□□□ -0.04
PTPRF-212ENST00000477970 EVI5LQ96CN4 794 aa14.81□□□□□ -0.04
PTPRF-212ENST00000477970 RGPD3A6NKT7 1758 aaPredicted RBP14.81□□□□□ -0.04
PTPRF-212ENST00000477970 RGPD4Q7Z3J3 1758 aa14.81□□□□□ -0.04
PTPRF-212ENST00000477970 COPS6Q7L5N1 327 aa14.81□□□□□ -0.04
PTPRF-212ENST00000477970 TMX3Q96JJ7 454 aa14.81□□□□□ -0.04
PTPRF-212ENST00000477970 CARD10Q9BWT7 1032 aa14.81□□□□□ -0.04
PTPRF-212ENST00000477970 TOGARAM1Q9Y4F4 1720 aa14.81□□□□□ -0.04
PTPRF-212ENST00000477970 RFX7Q2KHR2 1363 aa14.81□□□□□ -0.04
PTPRF-212ENST00000477970 COPRSQ9NQ92 184 aa14.81□□□□□ -0.04
PTPRF-212ENST00000477970 SASH1O94885 1247 aa14.8□□□□□ -0.04
PTPRF-212ENST00000477970 IFIT2P09913 472 aaKnown RBP14.8□□□□□ -0.04
PTPRF-212ENST00000477970 PLBD2Q8NHP8 589 aa14.8□□□□□ -0.04
PTPRF-212ENST00000477970 G3BP1Q13283 466 aaKnown RBP eCLIP14.8□□□□□ -0.04
PTPRF-212ENST00000477970 IL25Q9H293 177 aa14.8□□□□□ -0.04
PTPRF-212ENST00000477970 FOXD4L1Q9NU39 408 aa14.8□□□□□ -0.04
PTPRF-212ENST00000477970 KLHL40Q2TBA0 621 aa14.79□□□□□ -0.04
PTPRF-212ENST00000477970 USP16Q9Y5T5 823 aa14.79□□□□□ -0.04
PTPRF-212ENST00000477970 ZCRB1Q8TBF4 217 aaKnown RBP14.79□□□□□ -0.04
PTPRF-212ENST00000477970 AIMP1Q12904 312 aaKnown RBP14.79□□□□□ -0.04
PTPRF-212ENST00000477970 TICAM2Q86XR7 235 aa14.79□□□□□ -0.04
PTPRF-212ENST00000477970 MRE11P49959 708 aa14.78□□□□□ -0.04
PTPRF-212ENST00000477970 MYD88Q99836 296 aa14.78□□□□□ -0.04
PTPRF-212ENST00000477970 BCL9O00512 1426 aa14.78□□□□□ -0.04
PTPRF-212ENST00000477970 RFX5P48382 616 aaPredicted RBP14.78□□□□□ -0.04
PTPRF-212ENST00000477970 CASP7P55210 303 aa14.78□□□□□ -0.04
PTPRF-212ENST00000477970 EVA1CP58658 441 aa14.78□□□□□ -0.04
PTPRF-212ENST00000477970 SEPT12Q8IYM1 358 aa14.78□□□□□ -0.04
PTPRF-212ENST00000477970 CDCA7Q9BWT1 371 aaPredicted RBP14.78□□□□□ -0.04
PTPRF-212ENST00000477970 PA2G4Q9UQ80 394 aaKnown RBP14.78□□□□□ -0.04
PTPRF-212ENST00000477970 MYL6BP14649 208 aa14.77□□□□□ -0.04
PTPRF-212ENST00000477970 TTC14Q96N46 770 aa14.77□□□□□ -0.04
PTPRF-212ENST00000477970 AACSQ86V21 672 aa14.77□□□□□ -0.04
PTPRF-212ENST00000477970 ZGPATQ8N5A5 531 aaKnown RBP14.77□□□□□ -0.04
PTPRF-212ENST00000477970 TM6SF1Q9BZW5 370 aa14.77□□□□□ -0.04
PTPRF-212ENST00000477970 ZDHHC9Q9Y397 364 aa14.77□□□□□ -0.04
PTPRF-212ENST00000477970 BRPF3Q9ULD4 1205 aa14.77□□□□□ -0.05
PTPRF-212ENST00000477970 SNX14Q9Y5W7 946 aa14.77□□□□□ -0.05
PTPRF-212ENST00000477970 IL2RBP14784 551 aa14.76□□□□□ -0.05
PTPRF-212ENST00000477970 KIAA1211Q6ZU35 1233 aa14.76□□□□□ -0.05
PTPRF-212ENST00000477970 EAF2Q96CJ1 260 aaPredicted RBP14.76□□□□□ -0.05
PTPRF-212ENST00000477970 DIAPH3Q9NSV4 1193 aa14.76□□□□□ -0.05
PTPRF-212ENST00000477970 BRD1O95696 1058 aa14.76□□□□□ -0.05
PTPRF-212ENST00000477970 CCDC125Q86Z20 511 aa14.76□□□□□ -0.05
PTPRF-212ENST00000477970 STRN4Q9NRL3 753 aa14.75□□□□□ -0.05
PTPRF-212ENST00000477970 SPEF2Q9C093 1822 aa14.75□□□□□ -0.05
PTPRF-212ENST00000477970 TOM1L2Q6ZVM7 507 aa14.75□□□□□ -0.05
PTPRF-212ENST00000477970 UPF1Q92900 1129 aaKnown RBP eCLIP14.75□□□□□ -0.053e-7■■■■■ 28
PTPRF-212ENST00000477970 H7C1W4 665 aa14.74□□□□□ -0.05
PTPRF-212ENST00000477970 MAP4K4O95819 1239 aaPredicted RBP14.74□□□□□ -0.05
PTPRF-212ENST00000477970 XRCC6P12956 609 aaKnown RBP eCLIP14.74□□□□□ -0.05
PTPRF-212ENST00000477970 LMBRD1Q9NUN5 540 aa14.74□□□□□ -0.05
PTPRF-212ENST00000477970 CCDC9Q9Y3X0 531 aaKnown RBP14.74□□□□□ -0.05
PTPRF-212ENST00000477970 EPHA10Q5JZY3 1008 aa14.74□□□□□ -0.05
PTPRF-212ENST00000477970 MED23Q9ULK4 1368 aa14.74□□□□□ -0.05
PTPRF-212ENST00000477970 PTPN12Q05209 780 aaKnown RBP14.74□□□□□ -0.05
PTPRF-212ENST00000477970 FAM98CQ17RN3 349 aaKnown RBP14.74□□□□□ -0.05
PTPRF-212ENST00000477970 NHSQ6T4R5 1651 aa14.73□□□□□ -0.05
PTPRF-212ENST00000477970 CWC27Q6UX04 472 aaKnown RBP14.73□□□□□ -0.05
PTPRF-212ENST00000477970 KRT27Q7Z3Y8 459 aa14.73□□□□□ -0.05
PTPRF-212ENST00000477970 NBPF26B4DH59 902 aa14.73□□□□□ -0.05
PTPRF-212ENST00000477970 ATP5JP18859 108 aa14.73□□□□□ -0.05
PTPRF-212ENST00000477970 NBPF14Q5TI25 921 aa14.73□□□□□ -0.05
PTPRF-212ENST00000477970 NBPF10Q6P3W6 841 aaKnown RBP14.73□□□□□ -0.05
PTPRF-212ENST00000477970 NBPF15Q8N660 670 aa14.73□□□□□ -0.05
PTPRF-212ENST00000477970 RREB1Q92766 1687 aa14.73□□□□□ -0.05
PTPRF-212ENST00000477970 CCDC171Q6TFL3 1326 aa14.73□□□□□ -0.05
PTPRF-212ENST00000477970 PKP1Q13835 747 aa14.72□□□□□ -0.05
PTPRF-212ENST00000477970 GPR108Q9NPR9 543 aa14.72□□□□□ -0.05
PTPRF-212ENST00000477970 NECTIN1Q15223 517 aa14.72□□□□□ -0.05
PTPRF-212ENST00000477970 ALDH8A1Q9H2A2 487 aaPredicted RBP14.72□□□□□ -0.05
PTPRF-212ENST00000477970 GRPEL1Q9HAV7 217 aa14.72□□□□□ -0.05
PTPRF-212ENST00000477970 ITGB4P16144 1822 aa14.72□□□□□ -0.05
PTPRF-212ENST00000477970 ZNF445P59923 1031 aa14.72□□□□□ -0.05
PTPRF-212ENST00000477970 VPS53Q5VIR6 699 aa14.72□□□□□ -0.05
PTPRF-212ENST00000477970 VSIG10Q8N0Z9 540 aa14.72□□□□□ -0.05
PTPRF-212ENST00000477970 MAP4K1Q92918 833 aa14.72□□□□□ -0.05
PTPRF-212ENST00000477970 GZF1Q9H116 711 aaPredicted RBP14.72□□□□□ -0.05
PTPRF-212ENST00000477970 ATG3Q9NT62 314 aa14.72□□□□□ -0.05
PTPRF-212ENST00000477970 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.72□□□□□ -0.05
PTPRF-212ENST00000477970 RPAP1Q9BWH6 1393 aaPredicted RBP14.71□□□□□ -0.05
PTPRF-212ENST00000477970 ZSWIM6Q9HCJ5 1215 aa14.71□□□□□ -0.05
PTPRF-212ENST00000477970 FOXO4P98177 505 aa14.71□□□□□ -0.06
PTPRF-212ENST00000477970 TNNI3KQ59H18 835 aa14.71□□□□□ -0.06
PTPRF-212ENST00000477970 MCTP1Q6DN14 999 aa14.71□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms