RNA–Protein interactions for RNA: ENST00000474088.1

PKD1-211, Transcript of polycystin 1, transient receptor potential channel interacting, human

TSL 5

Gene PKD1, Length 923 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PKD1-211	ENST00000474088	PSMD1	Q99460	953 aa		32.53	■■■□□ 2.8
PKD1-211	ENST00000474088	TAF1D	Q9H5J8	278 aa	Predicted RBP	32.53	■■■□□ 2.8
PKD1-211	ENST00000474088	PARP10	Q53GL7	1025 aa		32.52	■■■□□ 2.8
PKD1-211	ENST00000474088	SNED1	Q8TER0	1413 aa		32.51	■■■□□ 2.8
PKD1-211	ENST00000474088	FZD9	O00144	591 aa		32.51	■■■□□ 2.79
PKD1-211	ENST00000474088	PROSER3	Q2NL68	480 aa		32.51	■■■□□ 2.79
PKD1-211	ENST00000474088	CCDC146	Q8IYE0	955 aa		32.51	■■■□□ 2.79
PKD1-211	ENST00000474088	RBM17	Q96I25	401 aa	Known RBP	32.51	■■■□□ 2.79
PKD1-211	ENST00000474088	ANXA1	P04083	346 aa		32.5	■■■□□ 2.79
PKD1-211	ENST00000474088	NEUROD2	Q15784	382 aa		32.5	■■■□□ 2.79
PKD1-211	ENST00000474088	CRAMP1	Q96RY5	1269 aa		32.5	■■■□□ 2.79
PKD1-211	ENST00000474088	SCN4A	P35499	1836 aa		32.49	■■■□□ 2.79
PKD1-211	ENST00000474088	LDHD	Q86WU2	507 aa		32.49	■■■□□ 2.79
PKD1-211	ENST00000474088	GRIPAP1	Q4V328	841 aa		32.48	■■■□□ 2.79
PKD1-211	ENST00000474088	C3orf67	Q6ZVT6	689 aa		32.47	■■■□□ 2.79
PKD1-211	ENST00000474088	JDP2	Q8WYK2	163 aa		32.47	■■■□□ 2.79
PKD1-211	ENST00000474088	NECTIN2	Q92692	538 aa		32.47	■■■□□ 2.79
PKD1-211	ENST00000474088	NLRP3	Q96P20	1036 aa		32.47	■■■□□ 2.79
PKD1-211	ENST00000474088	UTP14A	Q9BVJ6	771 aa	Known RBP	32.47	■■■□□ 2.79
PKD1-211	ENST00000474088	CREBZF	Q9NS37	354 aa		32.47	■■■□□ 2.79
PKD1-211	ENST00000474088	HACL1	Q9UJ83	578 aa		32.47	■■■□□ 2.79
PKD1-211	ENST00000474088	CHL1	O00533	1208 aa		32.46	■■■□□ 2.79
PKD1-211	ENST00000474088	SLC10A5	Q5PT55	438 aa		32.46	■■■□□ 2.79
PKD1-211	ENST00000474088	COPS6	Q7L5N1	327 aa		32.46	■■■□□ 2.79
PKD1-211	ENST00000474088	RUNDC1	Q96C34	613 aa		32.46	■■■□□ 2.79
PKD1-211	ENST00000474088	PPEF1	O14829	653 aa	Predicted RBP	32.44	■■■□□ 2.78
PKD1-211	ENST00000474088	GPC2	Q8N158	579 aa		32.44	■■■□□ 2.78
PKD1-211	ENST00000474088	TRIM35	Q9UPQ4	493 aa		32.44	■■■□□ 2.78
PKD1-211	ENST00000474088	TCERG1	O14776	1098 aa	Known RBP	32.43	■■■□□ 2.78
PKD1-211	ENST00000474088	AIMP1	Q12904	312 aa	Known RBP	32.43	■■■□□ 2.78
PKD1-211	ENST00000474088	WDR43	Q15061	677 aa	Known RBP eCLIP	32.43	■■■□□ 2.78
PKD1-211	ENST00000474088	EAPP	Q56P03	285 aa	Predicted RBP	32.43	■■■□□ 2.78
PKD1-211	ENST00000474088	COL13A1	Q5TAT6	717 aa	Predicted RBP	32.43	■■■□□ 2.78
PKD1-211	ENST00000474088	XAGE3	Q8WTP9	111 aa		32.43	■■■□□ 2.78
PKD1-211	ENST00000474088	EPHX2	P34913	555 aa		32.42	■■■□□ 2.78
PKD1-211	ENST00000474088	HSP90AB3P	Q58FF7	597 aa		32.42	■■■□□ 2.78
PKD1-211	ENST00000474088	LAS1L	Q9Y4W2	734 aa	Known RBP	32.42	■■■□□ 2.78
PKD1-211	ENST00000474088	RNF123	Q5XPI4	1314 aa		32.42	■■■□□ 2.78
PKD1-211	ENST00000474088	PASK	Q96RG2	1323 aa		32.42	■■■□□ 2.78
PKD1-211	ENST00000474088	KRT24	Q2M2I5	525 aa		32.41	■■■□□ 2.78
PKD1-211	ENST00000474088	DDX21	Q9NR30	783 aa	Known RBP eCLIP	32.41	■■■□□ 2.78
PKD1-211	ENST00000474088	ADAMTS8	Q9UP79	889 aa		32.41	■■■□□ 2.78
PKD1-211	ENST00000474088	ITGBL1	O95965	494 aa	Predicted RBP	32.4	■■■□□ 2.78
PKD1-211	ENST00000474088	EIF6	P56537	245 aa	Known RBP	32.4	■■■□□ 2.78
PKD1-211	ENST00000474088	SLC51A	Q86UW1	340 aa		32.4	■■■□□ 2.78
PKD1-211	ENST00000474088	PNMA8A	Q86V59	439 aa	Predicted RBP	32.4	■■■□□ 2.78
PKD1-211	ENST00000474088	CLEC11A	Q9Y240	323 aa		32.4	■■■□□ 2.78
PKD1-211	ENST00000474088	TCIRG1	Q13488	830 aa		32.39	■■■□□ 2.78
PKD1-211	ENST00000474088	NLRP10	Q86W26	655 aa		32.39	■■■□□ 2.78
PKD1-211	ENST00000474088	COL4A5	P29400	1685 aa		32.38	■■■□□ 2.77
PKD1-211	ENST00000474088	HSPA1A	P0DMV8	641 aa	Known RBP	32.38	■■■□□ 2.77
PKD1-211	ENST00000474088	HSPA1B	P0DMV9	641 aa	Known RBP	32.38	■■■□□ 2.77
PKD1-211	ENST00000474088	LARGE2	Q8N3Y3	721 aa		32.38	■■■□□ 2.77
PKD1-211	ENST00000474088	MKRN1	Q9UHC7	482 aa	Known RBP	32.38	■■■□□ 2.77
PKD1-211	ENST00000474088	TMX4	Q9H1E5	349 aa	Predicted RBP	32.37	■■■□□ 2.77
PKD1-211	ENST00000474088	ATP6V0A2	Q9Y487	856 aa		32.37	■■■□□ 2.77
PKD1-211	ENST00000474088	GJA3	Q9Y6H8	435 aa		32.37	■■■□□ 2.77
PKD1-211	ENST00000474088	ABCC4	O15439	1325 aa		32.35	■■■□□ 2.77
PKD1-211	ENST00000474088	CHPF2	Q9P2E5	772 aa		32.35	■■■□□ 2.77
PKD1-211	ENST00000474088	TRMT112	Q9UI30	125 aa	Known RBP	32.34	■■■□□ 2.77
PKD1-211	ENST00000474088	ADAMTSL1	Q8N6G6	1762 aa		32.34	■■■□□ 2.77
PKD1-211	ENST00000474088	BBOX1	O75936	387 aa		32.33	■■■□□ 2.77
PKD1-211	ENST00000474088	HOXB7	P09629	217 aa		32.33	■■■□□ 2.77
PKD1-211	ENST00000474088	HCLS1	P14317	486 aa	Predicted RBP	32.33	■■■□□ 2.77
PKD1-211	ENST00000474088	ANKRD36C	Q5JPF3	1778 aa		32.32	■■■□□ 2.77
PKD1-211	ENST00000474088	TMEM88B	A6NKF7	163 aa		32.32	■■■□□ 2.76
PKD1-211	ENST00000474088	HDGFL1	Q5TGJ6	251 aa		32.32	■■■□□ 2.76
PKD1-211	ENST00000474088	NIM1K	Q8IY84	436 aa		32.32	■■■□□ 2.76
PKD1-211	ENST00000474088	CNTROB	Q8N137	903 aa		32.32	■■■□□ 2.76
PKD1-211	ENST00000474088	VPS33B	Q9H267	617 aa		32.32	■■■□□ 2.76
PKD1-211	ENST00000474088	SH3TC1	Q8TE82	1336 aa		32.31	■■■□□ 2.76
PKD1-211	ENST00000474088	PPIP5K2	O43314	1243 aa		32.31	■■■□□ 2.76
PKD1-211	ENST00000474088	MAP1S	Q66K74	1059 aa	Predicted RBP	32.31	■■■□□ 2.76
PKD1-211	ENST00000474088	CFAP44	Q96MT7	982 aa		32.31	■■■□□ 2.76
PKD1-211	ENST00000474088	PRKRIP1	Q9H875	184 aa	Predicted RBP	32.31	■■■□□ 2.76
PKD1-211	ENST00000474088	CNTNAP1	P78357	1384 aa		32.31	■■■□□ 2.76
PKD1-211	ENST00000474088	LMOD1	P29536	600 aa	Predicted RBP	32.3	■■■□□ 2.76
PKD1-211	ENST00000474088	SP8	Q8IXZ3	490 aa		32.3	■■■□□ 2.76
PKD1-211	ENST00000474088	SCNN1D	P51172	638 aa		32.29	■■■□□ 2.76
PKD1-211	ENST00000474088	AOC3	Q16853	763 aa		32.29	■■■□□ 2.76
PKD1-211	ENST00000474088	ANKRD13D	Q6ZTN6	518 aa		32.29	■■■□□ 2.76
PKD1-211	ENST00000474088	SUPT20H	Q8NEM7	779 aa		32.29	■■■□□ 2.76
PKD1-211	ENST00000474088	PLBD2	Q8NHP8	589 aa		32.29	■■■□□ 2.76
PKD1-211	ENST00000474088	RTFDC1	Q9BY42	306 aa	Predicted RBP	32.29	■■■□□ 2.76
PKD1-211	ENST00000474088	DBF4	Q9UBU7	674 aa	Predicted RBP	32.29	■■■□□ 2.76
PKD1-211	ENST00000474088	DDX46	Q7L014	1031 aa	Known RBP	32.28	■■■□□ 2.76
PKD1-211	ENST00000474088	EPS15	P42566	896 aa		32.27	■■■□□ 2.76
PKD1-211	ENST00000474088	DUSP27	Q5VZP5	1158 aa		32.26	■■■□□ 2.75
PKD1-211	ENST00000474088	LAMB2	P55268	1798 aa		32.26	■■■□□ 2.75
PKD1-211	ENST00000474088	LTBP1	Q14766	1721 aa		32.26	■■■□□ 2.75
PKD1-211	ENST00000474088	GRAP	Q13588	217 aa		32.25	■■■□□ 2.75
PKD1-211	ENST00000474088	DPP8	Q6V1X1	898 aa	Predicted RBP	32.25	■■■□□ 2.75
PKD1-211	ENST00000474088	TNS4	Q8IZW8	715 aa		32.25	■■■□□ 2.75
PKD1-211	ENST00000474088	MPND	Q8N594	471 aa		32.25	■■■□□ 2.75
PKD1-211	ENST00000474088	GRAPL	Q8TC17	118 aa	Predicted RBP	32.25	■■■□□ 2.75
PKD1-211	ENST00000474088	ZNF428	Q96B54	188 aa		32.25	■■■□□ 2.75
PKD1-211	ENST00000474088	ISCA1	Q9BUE6	129 aa		32.25	■■■□□ 2.75
PKD1-211	ENST00000474088	MBIP	Q9NS73	344 aa		32.25	■■■□□ 2.75
PKD1-211	ENST00000474088	HYPK	Q9NX55	129 aa		32.24	■■■□□ 2.75
PKD1-211	ENST00000474088	ZNRF3	Q9ULT6	936 aa		32.24	■■■□□ 2.75

Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms