RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 TBC1D2Q9BYX2 928 aa15.21■□□□□ 0.02
COL6A3-209ENST00000472056 VCX3BQ9H321 246 aa15.21■□□□□ 0.02
COL6A3-209ENST00000472056 SARNPP82979 210 aaKnown RBP15.2■□□□□ 0.02
COL6A3-209ENST00000472056 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.2■□□□□ 0.02
COL6A3-209ENST00000472056 PIBF1Q8WXW3 757 aa15.2■□□□□ 0.02
COL6A3-209ENST00000472056 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.2■□□□□ 0.02
COL6A3-209ENST00000472056 CCDC14Q49A88 953 aa15.2■□□□□ 0.02
COL6A3-209ENST00000472056 FAM76AQ8TAV0 307 aa15.2■□□□□ 0.02
COL6A3-209ENST00000472056 PPP1R2P41236 205 aa15.2■□□□□ 0.02
COL6A3-209ENST00000472056 CAMK4Q16566 473 aa15.2■□□□□ 0.02
COL6A3-209ENST00000472056 NUP133Q8WUM0 1156 aa15.2■□□□□ 0.02
COL6A3-209ENST00000472056 GBP1P32455 592 aa15.2■□□□□ 0.02
COL6A3-209ENST00000472056 TDRD12Q587J7 1177 aaKnown RBP15.2■□□□□ 0.02
COL6A3-209ENST00000472056 RBM27Q9P2N5 1060 aaKnown RBP15.19■□□□□ 0.02
COL6A3-209ENST00000472056 TSNAXIP1Q2TAA8 658 aa15.19■□□□□ 0.02
COL6A3-209ENST00000472056 PRDM10Q9NQV6 1147 aa15.19■□□□□ 0.02
COL6A3-209ENST00000472056 SSRP1Q08945 709 aaKnown RBP15.19■□□□□ 0.02
COL6A3-209ENST00000472056 ARHGAP24Q8N264 748 aa15.19■□□□□ 0.02
COL6A3-209ENST00000472056 FSIP1Q8NA03 581 aa15.19■□□□□ 0.02
COL6A3-209ENST00000472056 PPFIBP2Q8ND30 876 aa15.19■□□□□ 0.02
COL6A3-209ENST00000472056 FAM184BQ9ULE4 1060 aa15.19■□□□□ 0.02
COL6A3-209ENST00000472056 SPG7Q9UQ90 795 aa15.19■□□□□ 0.02
COL6A3-209ENST00000472056 UBASH3AP57075 661 aa15.19■□□□□ 0.02
COL6A3-209ENST00000472056 CATIPQ7Z7H3 387 aa15.19■□□□□ 0.02
COL6A3-209ENST00000472056 SLC52A1Q9NWF4 448 aa15.19■□□□□ 0.02
COL6A3-209ENST00000472056 ZHX1Q9UKY1 873 aaPredicted RBP15.19■□□□□ 0.02
COL6A3-209ENST00000472056 PPFIA3O75145 1194 aa15.19■□□□□ 0.02
COL6A3-209ENST00000472056 DHX37Q8IY37 1157 aaKnown RBP15.19■□□□□ 0.02
COL6A3-209ENST00000472056 NFE2L2Q16236 605 aa15.18■□□□□ 0.02
COL6A3-209ENST00000472056 TMTC2Q8N394 836 aa15.18■□□□□ 0.02
COL6A3-209ENST00000472056 CDCA7LQ96GN5 454 aa15.18■□□□□ 0.02
COL6A3-209ENST00000472056 MTIF2P46199 727 aaKnown RBP15.18■□□□□ 0.02
COL6A3-209ENST00000472056 SLC12A7Q9Y666 1083 aa15.18■□□□□ 0.02
COL6A3-209ENST00000472056 ATF3P18847 181 aa15.18■□□□□ 0.02
COL6A3-209ENST00000472056 IRX4P78413 519 aa15.18■□□□□ 0.02
COL6A3-209ENST00000472056 SKILP12757 684 aa15.18■□□□□ 0.02
COL6A3-209ENST00000472056 VCXQ9H320 206 aa15.18■□□□□ 0.02
COL6A3-209ENST00000472056 MTRF1LQ9UGC7 380 aaKnown RBP15.17■□□□□ 0.02
COL6A3-209ENST00000472056 KIF5AQ12840 1032 aa15.17■□□□□ 0.02
COL6A3-209ENST00000472056 RNF168Q8IYW5 571 aaPredicted RBP15.17■□□□□ 0.02
COL6A3-209ENST00000472056 CFTRP13569 1480 aa15.17■□□□□ 0.02
COL6A3-209ENST00000472056 PHLDB2Q86SQ0 1253 aa15.17■□□□□ 0.02
COL6A3-209ENST00000472056 INTS4Q96HW7 963 aaKnown RBP15.17■□□□□ 0.02
COL6A3-209ENST00000472056 RASSF2P50749 326 aa15.17■□□□□ 0.02
COL6A3-209ENST00000472056 ANKRD24Q8TF21 1146 aa15.17■□□□□ 0.02
COL6A3-209ENST00000472056 CCDC114Q96M63 670 aa15.17■□□□□ 0.02
COL6A3-209ENST00000472056 HYPKQ9NX55 129 aa15.17■□□□□ 0.02
COL6A3-209ENST00000472056 TRIM14Q14142 442 aa15.17■□□□□ 0.02
COL6A3-209ENST00000472056 STMN2Q93045 179 aa15.17■□□□□ 0.02
COL6A3-209ENST00000472056 RAD50Q92878 1312 aa15.17■□□□□ 0.02
COL6A3-209ENST00000472056 GIGYF1O75420 1035 aaPredicted RBP15.17■□□□□ 0.02
COL6A3-209ENST00000472056 BICDL2A1A5D9 508 aa15.17■□□□□ 0.02
COL6A3-209ENST00000472056 CNGA4Q8IV77 575 aa15.17■□□□□ 0.02
COL6A3-209ENST00000472056 PABPN1LA6NDY0 278 aaKnown RBP15.16■□□□□ 0.02
COL6A3-209ENST00000472056 BCAR3O75815 825 aa15.16■□□□□ 0.02
COL6A3-209ENST00000472056 MATR3P43243 847 aaKnown RBP eCLIP15.16■□□□□ 0.02
COL6A3-209ENST00000472056 RSPH14Q9UHP6 348 aa15.16■□□□□ 0.02
COL6A3-209ENST00000472056 SSBP05455 408 aaKnown RBP eCLIP15.16■□□□□ 0.02
COL6A3-209ENST00000472056 NAPBQ9H115 298 aa15.16■□□□□ 0.02
COL6A3-209ENST00000472056 TATP17735 454 aaPredicted RBP15.16■□□□□ 0.02
COL6A3-209ENST00000472056 FKBP4Q02790 459 aaKnown RBP eCLIP15.16■□□□□ 0.02
COL6A3-209ENST00000472056 HDAC1Q13547 482 aaPredicted RBP15.16■□□□□ 0.02
COL6A3-209ENST00000472056 RAB3IL1Q8TBN0 382 aa15.16■□□□□ 0.02
COL6A3-209ENST00000472056 CPLX4Q7Z7G2 160 aa15.16■□□□□ 0.02
COL6A3-209ENST00000472056 CCDC96Q2M329 555 aa15.16■□□□□ 0.02
COL6A3-209ENST00000472056 KLHL10Q6JEL2 608 aa15.16■□□□□ 0.02
COL6A3-209ENST00000472056 BICDL1Q6ZP65 573 aa15.16■□□□□ 0.02
COL6A3-209ENST00000472056 CCDC194A0A1B0GVG4 234 aa15.16■□□□□ 0.02
COL6A3-209ENST00000472056 ZBTB17Q13105 803 aa15.15■□□□□ 0.02
COL6A3-209ENST00000472056 IQCDQ96DY2 449 aa15.15■□□□□ 0.02
COL6A3-209ENST00000472056 BCAP29Q9UHQ4 241 aa15.15■□□□□ 0.02
COL6A3-209ENST00000472056 MAP7D1Q3KQU3 841 aa15.15■□□□□ 0.02
COL6A3-209ENST00000472056 NBPF7P0C2Y1 421 aaPredicted RBP15.15■□□□□ 0.02
COL6A3-209ENST00000472056 ZBTB16Q05516 673 aa15.15■□□□□ 0.02
COL6A3-209ENST00000472056 MAP3K12Q12852 859 aa15.15■□□□□ 0.02
COL6A3-209ENST00000472056 MICALL1Q8N3F8 863 aa15.15■□□□□ 0.02
COL6A3-209ENST00000472056 ERO1AQ96HE7 468 aa15.15■□□□□ 0.02
COL6A3-209ENST00000472056 MCM6Q14566 821 aa15.15■□□□□ 0.02
COL6A3-209ENST00000472056 NBPF8Q3BBV2 869 aa15.15■□□□□ 0.02
COL6A3-209ENST00000472056 CUL5Q93034 780 aa15.15■□□□□ 0.02
COL6A3-209ENST00000472056 ZNF652Q9Y2D9 606 aa15.15■□□□□ 0.02
COL6A3-209ENST00000472056 SSX2IPQ9Y2D8 614 aa15.15■□□□□ 0.02
COL6A3-209ENST00000472056 ZSCAN22P10073 491 aaPredicted RBP15.14■□□□□ 0.01
COL6A3-209ENST00000472056 CCDC174Q6PII3 467 aa15.14■□□□□ 0.01
COL6A3-209ENST00000472056 ERMNQ8TAM6 284 aa15.14■□□□□ 0.01
COL6A3-209ENST00000472056 RPGRIP1Q96KN7 1286 aa15.14■□□□□ 0.01
COL6A3-209ENST00000472056 SYTL4Q96C24 671 aaPredicted RBP15.14■□□□□ 0.01
COL6A3-209ENST00000472056 TNNC1P63316 161 aa15.14■□□□□ 0.01
COL6A3-209ENST00000472056 ASXL1Q8IXJ9 1541 aa15.14■□□□□ 0.01
COL6A3-209ENST00000472056 NOP2P46087 812 aaKnown RBP15.14■□□□□ 0.01
COL6A3-209ENST00000472056 CCDC160A6NGH7 325 aa15.14■□□□□ 0.01
COL6A3-209ENST00000472056 SYKP43405 635 aa15.14■□□□□ 0.01
COL6A3-209ENST00000472056 CEP57Q86XR8 500 aa15.14■□□□□ 0.01
COL6A3-209ENST00000472056 KLHL34Q8N239 644 aa15.14■□□□□ 0.01
COL6A3-209ENST00000472056 ATRIPQ8WXE1 791 aa15.14■□□□□ 0.01
COL6A3-209ENST00000472056 CSRNP2Q9H175 543 aa15.14■□□□□ 0.01
COL6A3-209ENST00000472056 NCOA1Q15788 1441 aa15.14■□□□□ 0.01
COL6A3-209ENST00000472056 SDAD1Q9NVU7 687 aaKnown RBP eCLIP15.14■□□□□ 0.01
COL6A3-209ENST00000472056 LRP2BPQ9P2M1 347 aa15.14■□□□□ 0.01
COL6A3-209ENST00000472056 IMPACTQ9P2X3 320 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 170.4 ms