RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 ERBB4Q15303 1308 aa29.83■■■□□ 2.37
USP4-208ENST00000464168 GIGYF2Q6Y7W6 1299 aaKnown RBP29.83■■■□□ 2.37
USP4-208ENST00000464168 RPGRQ92834 1020 aaKnown RBP29.83■■■□□ 2.37
USP4-208ENST00000464168 RIC1Q4ADV7 1423 aa29.82■■■□□ 2.36
USP4-208ENST00000464168 EPHX2P34913 555 aa29.82■■■□□ 2.36
USP4-208ENST00000464168 TSPYL4Q9UJ04 414 aa29.82■■■□□ 2.36
USP4-208ENST00000464168 RNF123Q5XPI4 1314 aa29.81■■■□□ 2.36
USP4-208ENST00000464168 NTSR2O95665 410 aa29.81■■■□□ 2.36
USP4-208ENST00000464168 LRP10Q7Z4F1 713 aa29.81■■■□□ 2.36
USP4-208ENST00000464168 GPC2Q8N158 579 aa29.81■■■□□ 2.36
USP4-208ENST00000464168 PDIA6Q15084 440 aa29.8■■■□□ 2.36
USP4-208ENST00000464168 JDP2Q8WYK2 163 aa29.8■■■□□ 2.36
USP4-208ENST00000464168 CRAMP1Q96RY5 1269 aa29.8■■■□□ 2.36
USP4-208ENST00000464168 CLEC11AQ9Y240 323 aa29.8■■■□□ 2.36
USP4-208ENST00000464168 CNTNAP1P78357 1384 aa29.79■■■□□ 2.36
USP4-208ENST00000464168 C3orf67Q6ZVT6 689 aa29.79■■■□□ 2.36
USP4-208ENST00000464168 PNMA8AQ86V59 439 aaPredicted RBP29.79■■■□□ 2.36
USP4-208ENST00000464168 RIPK4P57078 832 aa29.78■■■□□ 2.36
USP4-208ENST00000464168 SLC51AQ86UW1 340 aa29.78■■■□□ 2.36
USP4-208ENST00000464168 RBM17Q96I25 401 aaKnown RBP29.78■■■□□ 2.36
USP4-208ENST00000464168 COL4A5P29400 1685 aa29.77■■■□□ 2.36
USP4-208ENST00000464168 TMEM88BA6NKF7 163 aa29.77■■■□□ 2.36
USP4-208ENST00000464168 CAPN15O75808 1086 aa29.77■■■□□ 2.36
USP4-208ENST00000464168 EIF2S2P20042 333 aaKnown RBP29.77■■■□□ 2.36
USP4-208ENST00000464168 GRIPAP1Q4V328 841 aa29.77■■■□□ 2.36
USP4-208ENST00000464168 PROSER3Q2NL68 480 aa29.76■■■□□ 2.35
USP4-208ENST00000464168 PARP10Q53GL7 1025 aa29.76■■■□□ 2.35
USP4-208ENST00000464168 PPP1R42Q7Z4L9 355 aa29.76■■■□□ 2.35
USP4-208ENST00000464168 BABAM1Q9NWV8 329 aa29.75■■■□□ 2.35
USP4-208ENST00000464168 ADAMTSL1Q8N6G6 1762 aa29.75■■■□□ 2.35
USP4-208ENST00000464168 TCERG1O14776 1098 aaKnown RBP29.74■■■□□ 2.35
USP4-208ENST00000464168 PPEF1O14829 653 aaPredicted RBP29.74■■■□□ 2.35
USP4-208ENST00000464168 EIF6P56537 245 aaKnown RBP29.74■■■□□ 2.35
USP4-208ENST00000464168 SLC10A5Q5PT55 438 aa29.74■■■□□ 2.35
USP4-208ENST00000464168 MAP1SQ66K74 1059 aaPredicted RBP29.74■■■□□ 2.35
USP4-208ENST00000464168 CNTROBQ8N137 903 aa29.74■■■□□ 2.35
USP4-208ENST00000464168 GJA3Q9Y6H8 435 aa29.74■■■□□ 2.35
USP4-208ENST00000464168 ANXA1P04083 346 aa29.73■■■□□ 2.35
USP4-208ENST00000464168 TMPOP42166 694 aaKnown RBP29.73■■■□□ 2.35
USP4-208ENST00000464168 LARGE2Q8N3Y3 721 aa29.73■■■□□ 2.35
USP4-208ENST00000464168 NLRP3Q96P20 1036 aa29.73■■■□□ 2.35
USP4-208ENST00000464168 VEGFBP49765 207 aa29.72■■■□□ 2.35
USP4-208ENST00000464168 RALBP1Q15311 655 aa29.72■■■□□ 2.35
USP4-208ENST00000464168 UTP14AQ9BVJ6 771 aaKnown RBP29.72■■■□□ 2.35
USP4-208ENST00000464168 FOXN1O15353 648 aa29.69■■■□□ 2.34
USP4-208ENST00000464168 SCNN1DP51172 638 aa29.69■■■□□ 2.34
USP4-208ENST00000464168 EPS15P42566 896 aa29.68■■■□□ 2.34
USP4-208ENST00000464168 LMOD3Q0VAK6 560 aa29.68■■■□□ 2.34
USP4-208ENST00000464168 COPS6Q7L5N1 327 aa29.68■■■□□ 2.34
USP4-208ENST00000464168 ATP6V0A2Q9Y487 856 aa29.68■■■□□ 2.34
USP4-208ENST00000464168 LMOD1P29536 600 aaPredicted RBP29.67■■■□□ 2.34
USP4-208ENST00000464168 NECTIN2Q92692 538 aa29.67■■■□□ 2.34
USP4-208ENST00000464168 XAGE3Q8WTP9 111 aa29.66■■■□□ 2.34
USP4-208ENST00000464168 ABCC4O15439 1325 aa29.66■■■□□ 2.34
USP4-208ENST00000464168 RASSF10A6NK89 507 aa29.65■■■□□ 2.34
USP4-208ENST00000464168 PPIP5K2O43314 1243 aa29.65■■■□□ 2.34
USP4-208ENST00000464168 AIMP1Q12904 312 aaKnown RBP29.65■■■□□ 2.34
USP4-208ENST00000464168 NLRP10Q86W26 655 aa29.65■■■□□ 2.34
USP4-208ENST00000464168 NIM1KQ8IY84 436 aa29.65■■■□□ 2.34
USP4-208ENST00000464168 LTBP1Q14766 1721 aa29.65■■■□□ 2.34
USP4-208ENST00000464168 AOC3Q16853 763 aa29.64■■■□□ 2.34
USP4-208ENST00000464168 DEFB115Q30KQ5 88 aa29.64■■■□□ 2.34
USP4-208ENST00000464168 HSP90AB3PQ58FF7 597 aa29.64■■■□□ 2.34
USP4-208ENST00000464168 TMX4Q9H1E5 349 aaPredicted RBP29.64■■■□□ 2.34
USP4-208ENST00000464168 VPS33BQ9H267 617 aa29.64■■■□□ 2.34
USP4-208ENST00000464168 CHL1O00533 1208 aa29.63■■■□□ 2.33
USP4-208ENST00000464168 HCLS1P14317 486 aaPredicted RBP29.63■■■□□ 2.33
USP4-208ENST00000464168 KRT24Q2M2I5 525 aa29.63■■■□□ 2.33
USP4-208ENST00000464168 DDX21Q9NR30 783 aaKnown RBP eCLIP29.63■■■□□ 2.33
USP4-208ENST00000464168 BBOX1O75936 387 aa29.62■■■□□ 2.33
USP4-208ENST00000464168 TCIRG1Q13488 830 aa29.62■■■□□ 2.33
USP4-208ENST00000464168 NEUROD2Q15784 382 aa29.62■■■□□ 2.33
USP4-208ENST00000464168 CCDC146Q8IYE0 955 aa29.62■■■□□ 2.33
USP4-208ENST00000464168 RTFDC1Q9BY42 306 aaPredicted RBP29.62■■■□□ 2.33
USP4-208ENST00000464168 WBP1LQ9NX94 342 aa29.62■■■□□ 2.33
USP4-208ENST00000464168 PRDM10Q9NQV6 1147 aa29.61■■■□□ 2.33
USP4-208ENST00000464168 FMR1Q06787 632 aaKnown RBP eCLIP29.6■■■□□ 2.33
USP4-208ENST00000464168 USP50Q70EL3 339 aaPredicted RBP29.6■■■□□ 2.33
USP4-208ENST00000464168 SP8Q8IXZ3 490 aa29.6■■■□□ 2.33
USP4-208ENST00000464168 AIDAQ96BJ3 306 aa29.6■■■□□ 2.33
USP4-208ENST00000464168 TRMT112Q9UI30 125 aaKnown RBP29.6■■■□□ 2.33
USP4-208ENST00000464168 CTCFP49711 727 aaPredicted RBP29.59■■■□□ 2.33
USP4-208ENST00000464168 CXCL9Q07325 125 aa29.59■■■□□ 2.33
USP4-208ENST00000464168 SUPT20HQ8NEM7 779 aa29.59■■■□□ 2.33
USP4-208ENST00000464168 ZNRF3Q9ULT6 936 aa29.59■■■□□ 2.33
USP4-208ENST00000464168 ABT1Q9ULW3 272 aaKnown RBP29.59■■■□□ 2.33
USP4-208ENST00000464168 TRIM35Q9UPQ4 493 aa29.59■■■□□ 2.33
USP4-208ENST00000464168 MYBBP1AQ9BQG0 1328 aaKnown RBP29.58■■■□□ 2.33
USP4-208ENST00000464168 GPRC5DQ9NZD1 345 aa29.58■■■□□ 2.33
USP4-208ENST00000464168 SH3TC1Q8TE82 1336 aa29.57■■■□□ 2.32
USP4-208ENST00000464168 DPP8Q6V1X1 898 aaPredicted RBP29.57■■■□□ 2.32
USP4-208ENST00000464168 LAS1LQ9Y4W2 734 aaKnown RBP29.57■■■□□ 2.32
USP4-208ENST00000464168 WDR33Q9C0J8 1336 aaKnown RBP29.56■■■□□ 2.32
USP4-208ENST00000464168 DDX10Q13206 875 aaKnown RBP29.56■■■□□ 2.32
USP4-208ENST00000464168 DDX46Q7L014 1031 aaKnown RBP29.56■■■□□ 2.32
USP4-208ENST00000464168 MPNDQ8N594 471 aa29.56■■■□□ 2.32
USP4-208ENST00000464168 RUNDC1Q96C34 613 aa29.56■■■□□ 2.32
USP4-208ENST00000464168 CHPF2Q9P2E5 772 aa29.56■■■□□ 2.32
USP4-208ENST00000464168 ADARB2Q9NS39 739 aaKnown RBP29.55■■■□□ 2.32
USP4-208ENST00000464168 TRAF5O00463 557 aa29.54■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms