RNA–Protein interactions for RNA: ENST00000453441.1

COL28A1-205, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 2

Gene COL28A1, Length 700 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-205ENST00000453441 SLFN5Q08AF3 891 aa11.23□□□□□ -0.61
COL28A1-205ENST00000453441 R3HDM1Q15032 1099 aaKnown RBP11.23□□□□□ -0.61
COL28A1-205ENST00000453441 TRAPPC3LQ5T215 181 aa11.23□□□□□ -0.61
COL28A1-205ENST00000453441 DUSP27Q5VZP5 1158 aa11.23□□□□□ -0.61
COL28A1-205ENST00000453441 ZNF428Q96B54 188 aa11.23□□□□□ -0.61
COL28A1-205ENST00000453441 USP16Q9Y5T5 823 aa11.23□□□□□ -0.61
COL28A1-205ENST00000453441 PNPLA7Q6ZV29 1317 aa11.23□□□□□ -0.61
COL28A1-205ENST00000453441 CASZ1Q86V15 1759 aa11.23□□□□□ -0.61
COL28A1-205ENST00000453441 CACNA1FO60840 1977 aa11.23□□□□□ -0.61
COL28A1-205ENST00000453441 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.22□□□□□ -0.61
COL28A1-205ENST00000453441 CT47B1P0C2W7 299 aaPredicted RBP11.22□□□□□ -0.61
COL28A1-205ENST00000453441 EIF5P55010 431 aaKnown RBP11.22□□□□□ -0.61
COL28A1-205ENST00000453441 HDGFL1Q5TGJ6 251 aa11.22□□□□□ -0.61
COL28A1-205ENST00000453441 TSR2Q969E8 191 aaKnown RBP11.22□□□□□ -0.61
COL28A1-205ENST00000453441 ZBTB1Q9Y2K1 713 aa11.22□□□□□ -0.61
COL28A1-205ENST00000453441 COL15A1P39059 1388 aa11.21□□□□□ -0.61
COL28A1-205ENST00000453441 RFC4P35249 363 aa11.21□□□□□ -0.61
COL28A1-205ENST00000453441 TWISTNBQ3B726 338 aaPredicted RBP11.21□□□□□ -0.61
COL28A1-205ENST00000453441 CCDC30Q5VVM6 783 aa11.21□□□□□ -0.61
COL28A1-205ENST00000453441 DDX21Q9NR30 783 aaKnown RBP eCLIP11.21□□□□□ -0.61
COL28A1-205ENST00000453441 DBF4Q9UBU7 674 aaPredicted RBP11.21□□□□□ -0.61
COL28A1-205ENST00000453441 SENP3-EIF4A1A0A087X0R7 540 aa11.2□□□□□ -0.62
COL28A1-205ENST00000453441 A1BGP04217 495 aa11.2□□□□□ -0.62
COL28A1-205ENST00000453441 CANXP27824 592 aaKnown RBP11.2□□□□□ -0.62
COL28A1-205ENST00000453441 PLCB2Q00722 1185 aa11.2□□□□□ -0.62
COL28A1-205ENST00000453441 TRMT2AQ8IZ69 625 aaKnown RBP11.2□□□□□ -0.62
COL28A1-205ENST00000453441 C8orf58Q8NAV2 365 aa11.2□□□□□ -0.62
COL28A1-205ENST00000453441 MTFR1LQ9H019 292 aa11.2□□□□□ -0.62
COL28A1-205ENST00000453441 C4AP0C0L4 1744 aa11.2□□□□□ -0.62
COL28A1-205ENST00000453441 USP42Q9H9J4 1324 aaKnown RBP11.19□□□□□ -0.62
COL28A1-205ENST00000453441 PRAMEF22A3QJZ6 481 aa11.19□□□□□ -0.62
COL28A1-205ENST00000453441 PSDA5PKW4 1024 aaPredicted RBP11.19□□□□□ -0.62
COL28A1-205ENST00000453441 FAM205CA6NFA0 338 aa11.19□□□□□ -0.62
COL28A1-205ENST00000453441 ZPR1O75312 459 aa11.19□□□□□ -0.62
COL28A1-205ENST00000453441 PHF14O94880 888 aa11.19□□□□□ -0.62
COL28A1-205ENST00000453441 EIF2S2P20042 333 aaKnown RBP11.19□□□□□ -0.62
COL28A1-205ENST00000453441 EXOSC9Q06265 439 aaKnown RBP11.19□□□□□ -0.62
COL28A1-205ENST00000453441 COL23A1Q86Y22 540 aaPredicted RBP11.19□□□□□ -0.62
COL28A1-205ENST00000453441 OXER1Q8TDS5 423 aa11.19□□□□□ -0.62
COL28A1-205ENST00000453441 STK31Q9BXU1 1019 aa11.19□□□□□ -0.62
COL28A1-205ENST00000453441 HYPKQ9NX55 129 aa11.19□□□□□ -0.62
COL28A1-205ENST00000453441 NARFQ9UHQ1 456 aa11.19□□□□□ -0.62
COL28A1-205ENST00000453441 COL24A1Q17RW2 1714 aa11.18□□□□□ -0.62
COL28A1-205ENST00000453441 NBPF26B4DH59 902 aa11.18□□□□□ -0.62
COL28A1-205ENST00000453441 KRT24Q2M2I5 525 aa11.18□□□□□ -0.62
COL28A1-205ENST00000453441 NBPF10Q6P3W6 841 aaKnown RBP11.18□□□□□ -0.62
COL28A1-205ENST00000453441 KIF6Q6ZMV9 814 aa11.18□□□□□ -0.62
COL28A1-205ENST00000453441 NLGN1Q8N2Q7 840 aa11.18□□□□□ -0.62
COL28A1-205ENST00000453441 NBPF15Q8N660 670 aa11.18□□□□□ -0.62
COL28A1-205ENST00000453441 ARHGEF1Q92888 912 aaKnown RBP11.18□□□□□ -0.62
COL28A1-205ENST00000453441 HS3ST6Q96QI5 342 aa11.18□□□□□ -0.62
COL28A1-205ENST00000453441 ZNF652Q9Y2D9 606 aa11.18□□□□□ -0.62
COL28A1-205ENST00000453441 SCN7AQ01118 1682 aa11.17□□□□□ -0.62
COL28A1-205ENST00000453441 ERVV-1B6SEH8 477 aa11.17□□□□□ -0.62
COL28A1-205ENST00000453441 VAMP4O75379 141 aa11.17□□□□□ -0.62
COL28A1-205ENST00000453441 CLEC4GQ6UXB4 293 aa11.17□□□□□ -0.62
COL28A1-205ENST00000453441 DZIP3Q86Y13 1208 aaKnown RBP11.17□□□□□ -0.62
COL28A1-205ENST00000453441 KHSRPQ92945 711 aaKnown RBP eCLIP11.17□□□□□ -0.62
COL28A1-205ENST00000453441 SPON1Q9HCB6 807 aa11.17□□□□□ -0.62
COL28A1-205ENST00000453441 BCORQ6W2J9 1755 aa11.17□□□□□ -0.62
COL28A1-205ENST00000453441 ELL2O00472 640 aaPredicted RBP11.16□□□□□ -0.62
COL28A1-205ENST00000453441 NUDT7P0C024 238 aa11.16□□□□□ -0.62
COL28A1-205ENST00000453441 POLD1P28340 1107 aa11.16□□□□□ -0.62
COL28A1-205ENST00000453441 PDIA6Q15084 440 aa11.16□□□□□ -0.62
COL28A1-205ENST00000453441 CDAN1Q8IWY9 1227 aa11.16□□□□□ -0.62
COL28A1-205ENST00000453441 TSPYL6Q8N831 410 aa11.16□□□□□ -0.62
COL28A1-205ENST00000453441 CDCA7LQ96GN5 454 aa11.16□□□□□ -0.62
COL28A1-205ENST00000453441 CHPF2Q9P2E5 772 aa11.16□□□□□ -0.62
COL28A1-205ENST00000453441 LRP5O75197 1615 aa11.16□□□□□ -0.62
COL28A1-205ENST00000453441 DDX58O95786 925 aaKnown RBP11.15□□□□□ -0.62
COL28A1-205ENST00000453441 GYS1P13807 737 aa11.15□□□□□ -0.62
COL28A1-205ENST00000453441 MYL6BP14649 208 aa11.15□□□□□ -0.62
COL28A1-205ENST00000453441 CAMK2BQ13554 666 aa11.15□□□□□ -0.62
COL28A1-205ENST00000453441 ALDH1L2Q3SY69 923 aa11.15□□□□□ -0.62
COL28A1-205ENST00000453441 HSP90AB3PQ58FF7 597 aa11.15□□□□□ -0.62
COL28A1-205ENST00000453441 LRP10Q7Z4F1 713 aa11.15□□□□□ -0.62
COL28A1-205ENST00000453441 AMIGO3Q86WK7 504 aa11.15□□□□□ -0.62
COL28A1-205ENST00000453441 TSHZ2Q9NRE2 1034 aa11.15□□□□□ -0.62
COL28A1-205ENST00000453441 WDR70Q9NW82 654 aa11.15□□□□□ -0.62
COL28A1-205ENST00000453441 ZNF330Q9Y3S2 320 aaPredicted RBP11.15□□□□□ -0.62
COL28A1-205ENST00000453441 MAP3K15Q6ZN16 1313 aa11.14□□□□□ -0.63
COL28A1-205ENST00000453441 CAMTA2O94983 1202 aa11.14□□□□□ -0.63
COL28A1-205ENST00000453441 USPL1Q5W0Q7 1092 aa11.14□□□□□ -0.63
COL28A1-205ENST00000453441 ATP10DQ9P241 1426 aa11.13□□□□□ -0.63
COL28A1-205ENST00000453441 ZBTB7AO95365 584 aa11.13□□□□□ -0.63
COL28A1-205ENST00000453441 PROSER3Q2NL68 480 aa11.13□□□□□ -0.63
COL28A1-205ENST00000453441 COPS6Q7L5N1 327 aa11.13□□□□□ -0.63
COL28A1-205ENST00000453441 PLBD2Q8NHP8 589 aa11.13□□□□□ -0.63
COL28A1-205ENST00000453441 XAGE3Q8WTP9 111 aa11.13□□□□□ -0.63
COL28A1-205ENST00000453441 NECTIN2Q92692 538 aa11.13□□□□□ -0.63
COL28A1-205ENST00000453441 TBC1D2BQ9UPU7 963 aa11.13□□□□□ -0.63
COL28A1-205ENST00000453441 POTEB3A0JP26 581 aa11.12□□□□□ -0.63
COL28A1-205ENST00000453441 PIP4K2AP48426 406 aaPredicted RBP11.12□□□□□ -0.63
COL28A1-205ENST00000453441 VARS2Q5ST30 1063 aaKnown RBP11.12□□□□□ -0.63
COL28A1-205ENST00000453441 POTEBQ6S5H4 581 aa11.12□□□□□ -0.63
COL28A1-205ENST00000453441 GIGYF2Q6Y7W6 1299 aaKnown RBP11.12□□□□□ -0.63
COL28A1-205ENST00000453441 ARXQ96QS3 562 aa11.12□□□□□ -0.63
COL28A1-205ENST00000453441 PDGFDQ9GZP0 370 aaPredicted RBP11.12□□□□□ -0.63
COL28A1-205ENST00000453441 SRP68Q9UHB9 627 aaKnown RBP11.12□□□□□ -0.63
COL28A1-205ENST00000453441 CARMIL3Q8ND23 1372 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms