RNA–Protein interactions for RNA: ENST00000448078.1

USP49-205, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 3

Gene USP49, Length 480 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-205ENST00000448078 CLDN10P78369 228 aa9.2□□□□□ -0.94
USP49-205ENST00000448078 FOXR1Q6PIV2 292 aa9.2□□□□□ -0.94
USP49-205ENST00000448078 NIFKQ9BYG3 293 aaKnown RBP9.2□□□□□ -0.94
USP49-205ENST00000448078 ZNF232Q9UNY5 417 aa9.2□□□□□ -0.94
USP49-205ENST00000448078 NLRP1Q9C000 1473 aa9.2□□□□□ -0.94
USP49-205ENST00000448078 SAMD9LQ8IVG5 1584 aa9.2□□□□□ -0.94
USP49-205ENST00000448078 MYO3AQ8NEV4 1616 aa9.2□□□□□ -0.94
USP49-205ENST00000448078 NFX1Q12986 1120 aaKnown RBP9.19□□□□□ -0.94
USP49-205ENST00000448078 C4orf17Q53FE4 359 aa9.19□□□□□ -0.94
USP49-205ENST00000448078 SV2AQ7L0J3 742 aa9.19□□□□□ -0.94
USP49-205ENST00000448078 VWA5B2Q8N398 1253 aa9.19□□□□□ -0.94
USP49-205ENST00000448078 KIAA1024Q9UPX6 916 aa9.19□□□□□ -0.94
USP49-205ENST00000448078 FAM135BQ49AJ0 1406 aa9.19□□□□□ -0.94
USP49-205ENST00000448078 CASKIN1Q8WXD9 1431 aa9.19□□□□□ -0.94
USP49-205ENST00000448078 DNMT1P26358 1616 aaKnown RBP9.19□□□□□ -0.94
USP49-205ENST00000448078 CLTCQ00610 1675 aaKnown RBP9.19□□□□□ -0.94
USP49-205ENST00000448078 SFI1A8K8P3 1242 aa9.18□□□□□ -0.94
USP49-205ENST00000448078 SPATA31C2B4DYI2 1134 aa9.18□□□□□ -0.94
USP49-205ENST00000448078 RTEL1-TNFRSF6BF6WH68 1400 aa9.18□□□□□ -0.94
USP49-205ENST00000448078 H7C1W4 665 aa9.18□□□□□ -0.94
USP49-205ENST00000448078 MED14O60244 1454 aa9.18□□□□□ -0.94
USP49-205ENST00000448078 ZNF142P52746 1687 aaPredicted RBP9.18□□□□□ -0.94
USP49-205ENST00000448078 SEC13P55735 322 aa9.18□□□□□ -0.94
USP49-205ENST00000448078 ATP7AQ04656 1500 aa9.18□□□□□ -0.94
USP49-205ENST00000448078 NBPF1Q3BBV0 1214 aa9.18□□□□□ -0.94
USP49-205ENST00000448078 MTUS2Q5JR59 1369 aa9.18□□□□□ -0.94
USP49-205ENST00000448078 PPARGC1BQ86YN6 1023 aaKnown RBP9.18□□□□□ -0.94
USP49-205ENST00000448078 TNS4Q8IZW8 715 aa9.18□□□□□ -0.94
USP49-205ENST00000448078 FHDC1Q9C0D6 1143 aaPredicted RBP9.18□□□□□ -0.94
USP49-205ENST00000448078 ARHGAP35Q9NRY4 1499 aa9.18□□□□□ -0.94
USP49-205ENST00000448078 DYRK1BQ9Y463 629 aa9.18□□□□□ -0.94
USP49-205ENST00000448078 CDC42BPBQ9Y5S2 1711 aa9.18□□□□□ -0.94
USP49-205ENST00000448078 GPATCH8Q9UKJ3 1502 aaKnown RBP9.17□□□□□ -0.94
USP49-205ENST00000448078 A0A1B0GTH6 734 aa9.17□□□□□ -0.94
USP49-205ENST00000448078 TBCELQ5QJ74 424 aa9.17□□□□□ -0.94
USP49-205ENST00000448078 CFAP70Q5T0N1 1121 aa9.17□□□□□ -0.94
USP49-205ENST00000448078 ITSN2Q9NZM3 1697 aa9.16□□□□□ -0.94
USP49-205ENST00000448078 PREX2Q70Z35 1606 aa9.16□□□□□ -0.94
USP49-205ENST00000448078 UGGT1Q9NYU2 1555 aa9.16□□□□□ -0.94
USP49-205ENST00000448078 LRRC7Q96NW7 1537 aa9.16□□□□□ -0.94
USP49-205ENST00000448078 PZPP20742 1482 aa9.16□□□□□ -0.94
USP49-205ENST00000448078 USP17L15C9J2P7 530 aa9.16□□□□□ -0.94
USP49-205ENST00000448078 USP17L10C9JJH3 530 aa9.16□□□□□ -0.94
USP49-205ENST00000448078 USP17L13C9JLJ4 530 aa9.16□□□□□ -0.94
USP49-205ENST00000448078 USP17L12C9JPN9 530 aa9.16□□□□□ -0.94
USP49-205ENST00000448078 USP17L11C9JVI0 530 aa9.16□□□□□ -0.94
USP49-205ENST00000448078 USP17L21D6R901 530 aa9.16□□□□□ -0.94
USP49-205ENST00000448078 USP17L18D6R9N7 530 aa9.16□□□□□ -0.94
USP49-205ENST00000448078 USP17L22D6RA61 530 aa9.16□□□□□ -0.94
USP49-205ENST00000448078 USP17L17D6RBQ6 530 aa9.16□□□□□ -0.94
USP49-205ENST00000448078 USP17L19D6RCP7 530 aa9.16□□□□□ -0.94
USP49-205ENST00000448078 USP17L20D6RJB6 530 aa9.16□□□□□ -0.94
USP49-205ENST00000448078 F11P03951 625 aa9.16□□□□□ -0.94
USP49-205ENST00000448078 TATP17735 454 aaPredicted RBP9.16□□□□□ -0.94
USP49-205ENST00000448078 RXRBP28702 533 aa9.16□□□□□ -0.94
USP49-205ENST00000448078 USP17L24Q0WX57 530 aa9.16□□□□□ -0.94
USP49-205ENST00000448078 DPYDQ12882 1025 aa9.16□□□□□ -0.94
USP49-205ENST00000448078 ARSJQ5FYB0 599 aaPredicted RBP9.16□□□□□ -0.94
USP49-205ENST00000448078 WDR44Q5JSH3 913 aa9.16□□□□□ -0.94
USP49-205ENST00000448078 HRH3Q9Y5N1 445 aa9.16□□□□□ -0.94
USP49-205ENST00000448078 GJA3Q9Y6H8 435 aa9.16□□□□□ -0.94
USP49-205ENST00000448078 SENP3-EIF4A1A0A087X0R7 540 aa9.15□□□□□ -0.94
USP49-205ENST00000448078 CDK2AP1O14519 115 aa9.15□□□□□ -0.94
USP49-205ENST00000448078 ZBTB7BO15156 539 aaPredicted RBP9.15□□□□□ -0.94
USP49-205ENST00000448078 KCNA6P17658 529 aa9.15□□□□□ -0.94
USP49-205ENST00000448078 CRTC2Q53ET0 693 aaPredicted RBP9.15□□□□□ -0.94
USP49-205ENST00000448078 BICDL1Q6ZP65 573 aa9.15□□□□□ -0.94
USP49-205ENST00000448078 SLC9A9Q8IVB4 645 aa9.15□□□□□ -0.94
USP49-205ENST00000448078 CCDC82Q8N4S0 544 aa9.15□□□□□ -0.94
USP49-205ENST00000448078 TSEN2Q8NCE0 465 aaKnown RBP9.15□□□□□ -0.94
USP49-205ENST00000448078 TRERF1Q96PN7 1200 aa9.15□□□□□ -0.94
USP49-205ENST00000448078 ARID3AQ99856 593 aa9.15□□□□□ -0.94
USP49-205ENST00000448078 NEUROD4Q9HD90 331 aa9.15□□□□□ -0.94
USP49-205ENST00000448078 SLAIN2Q9P270 581 aa9.15□□□□□ -0.94
USP49-205ENST00000448078 PARP3Q9Y6F1 533 aa9.15□□□□□ -0.94
USP49-205ENST00000448078 SYCP2Q9BX26 1530 aa9.15□□□□□ -0.95
USP49-205ENST00000448078 ERBB4Q15303 1308 aa9.14□□□□□ -0.95
USP49-205ENST00000448078 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.14□□□□□ -0.95
USP49-205ENST00000448078 EFHC2Q5JST6 749 aa9.14□□□□□ -0.95
USP49-205ENST00000448078 KANK4Q5T7N3 995 aaPredicted RBP9.14□□□□□ -0.95
USP49-205ENST00000448078 ANKMY2Q8IV38 441 aa9.14□□□□□ -0.95
USP49-205ENST00000448078 SIX5Q8N196 739 aa9.14□□□□□ -0.95
USP49-205ENST00000448078 FAM200AQ8TCP9 573 aa9.14□□□□□ -0.95
USP49-205ENST00000448078 SLC4A9Q96Q91 983 aa9.14□□□□□ -0.95
USP49-205ENST00000448078 NUCKS1Q9H1E3 243 aaKnown RBP9.14□□□□□ -0.95
USP49-205ENST00000448078 RUBCNLQ9H714 662 aa9.14□□□□□ -0.95
USP49-205ENST00000448078 JCADQ9P266 1359 aa9.13□□□□□ -0.95
USP49-205ENST00000448078 ZNF644Q9H582 1327 aaPredicted RBP9.13□□□□□ -0.95
USP49-205ENST00000448078 VWDEQ8N2E2 1590 aa9.13□□□□□ -0.95
USP49-205ENST00000448078 FAM196BA6NMK8 535 aa9.13□□□□□ -0.95
USP49-205ENST00000448078 PPP1R12BO60237 982 aaPredicted RBP9.13□□□□□ -0.95
USP49-205ENST00000448078 LGR5O75473 907 aa9.13□□□□□ -0.95
USP49-205ENST00000448078 GMPRP36959 345 aa9.13□□□□□ -0.95
USP49-205ENST00000448078 KDM5DQ9BY66 1539 aa9.12□□□□□ -0.95
USP49-205ENST00000448078 MSX1P28360 303 aa9.12□□□□□ -0.95
USP49-205ENST00000448078 PTK7Q13308 1070 aa9.12□□□□□ -0.95
USP49-205ENST00000448078 TRIM22Q8IYM9 498 aa9.12□□□□□ -0.95
USP49-205ENST00000448078 GTPBP3Q969Y2 492 aaKnown RBP9.12□□□□□ -0.95
USP49-205ENST00000448078 SCHIP1Q9P0W5 487 aaPredicted RBP9.12□□□□□ -0.95
USP49-205ENST00000448078 NOVA2Q9UNW9 492 aaKnown RBP9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms