RNA–Protein interactions for RNA: ENST00000413987.1

SNHG3-201, Transcript of small nucleolar RNA host gene 3, humanhuman

TSL 1 (best)

Gene SNHG3, Length 2,201 nt, Biotype retained intron, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG3-201ENST00000413987 FCHSD2O94868 740 aa11.45□□□□□ -0.58
SNHG3-201ENST00000413987 XRCC6P12956 609 aaKnown RBP eCLIP11.45□□□□□ -0.58
SNHG3-201ENST00000413987 TMPOP42166 694 aaKnown RBP11.45□□□□□ -0.58
SNHG3-201ENST00000413987 ABL2P42684 1182 aa11.45□□□□□ -0.58
SNHG3-201ENST00000413987 RGS3P49796 1198 aa11.45□□□□□ -0.58
SNHG3-201ENST00000413987 PLEKHG6Q3KR16 790 aa11.45□□□□□ -0.58
SNHG3-201ENST00000413987 ZNF467Q7Z7K2 595 aaPredicted RBP11.45□□□□□ -0.58
SNHG3-201ENST00000413987 ZCRB1Q8TBF4 217 aaKnown RBP11.45□□□□□ -0.58
SNHG3-201ENST00000413987 ANKRD33BA6NCL7 494 aa11.44□□□□□ -0.58
SNHG3-201ENST00000413987 FAM83GA6ND36 823 aa11.44□□□□□ -0.58
SNHG3-201ENST00000413987 C7P10643 843 aa11.44□□□□□ -0.58
SNHG3-201ENST00000413987 POLD1P28340 1107 aa11.44□□□□□ -0.58
SNHG3-201ENST00000413987 BANK1Q8NDB2 785 aa11.44□□□□□ -0.58
SNHG3-201ENST00000413987 ANKRD24Q8TF21 1146 aa11.44□□□□□ -0.58
SNHG3-201ENST00000413987 PIK3R5Q8WYR1 880 aa11.44□□□□□ -0.58
SNHG3-201ENST00000413987 NRDCO43847 1150 aa11.44□□□□□ -0.58
SNHG3-201ENST00000413987 TOM1O60784 492 aa11.44□□□□□ -0.58
SNHG3-201ENST00000413987 COPB2P35606 906 aa11.44□□□□□ -0.58
SNHG3-201ENST00000413987 MRE11P49959 708 aa11.44□□□□□ -0.58
SNHG3-201ENST00000413987 RIPK4P57078 832 aa11.44□□□□□ -0.58
SNHG3-201ENST00000413987 DCTN1Q14203 1278 aa11.44□□□□□ -0.58
SNHG3-201ENST00000413987 TPM2P07951 284 aa11.43□□□□□ -0.58
SNHG3-201ENST00000413987 HDGFL1Q5TGJ6 251 aa11.43□□□□□ -0.58
SNHG3-201ENST00000413987 ANTXR1Q9H6X2 564 aa11.43□□□□□ -0.58
SNHG3-201ENST00000413987 UPF2Q9HAU5 1272 aaKnown RBP11.43□□□□□ -0.58
SNHG3-201ENST00000413987 TRIM35Q9UPQ4 493 aa11.43□□□□□ -0.58
SNHG3-201ENST00000413987 IGSF1Q8N6C5 1336 aa11.43□□□□□ -0.58
SNHG3-201ENST00000413987 RTL1A6NKG5 1358 aa11.43□□□□□ -0.58
SNHG3-201ENST00000413987 ABCA3Q99758 1704 aa11.43□□□□□ -0.58
SNHG3-201ENST00000413987 TAGLNQ01995 201 aaKnown RBP11.43□□□□□ -0.58
SNHG3-201ENST00000413987 PRDM11Q9NQV5 511 aa11.43□□□□□ -0.58
SNHG3-201ENST00000413987 NRBP1Q9UHY1 535 aa11.43□□□□□ -0.58
SNHG3-201ENST00000413987 COL4A3BPQ9Y5P4 624 aa11.43□□□□□ -0.58
SNHG3-201ENST00000413987 CFAP69A5D8W1 941 aa11.42□□□□□ -0.58
SNHG3-201ENST00000413987 EVA1CP58658 441 aa11.42□□□□□ -0.58
SNHG3-201ENST00000413987 DUSP27Q5VZP5 1158 aa11.42□□□□□ -0.58
SNHG3-201ENST00000413987 ARMCX6Q7L4S7 300 aa11.42□□□□□ -0.58
SNHG3-201ENST00000413987 GET4Q7L5D6 327 aaPredicted RBP11.42□□□□□ -0.58
SNHG3-201ENST00000413987 CERKQ8TCT0 537 aa11.42□□□□□ -0.58
SNHG3-201ENST00000413987 ADAMTS19Q8TE59 1207 aa11.42□□□□□ -0.58
SNHG3-201ENST00000413987 TSPAN18Q96SJ8 248 aa11.42□□□□□ -0.58
SNHG3-201ENST00000413987 LARP6Q9BRS8 491 aaKnown RBP11.42□□□□□ -0.58
SNHG3-201ENST00000413987 PHLPP1O60346 1717 aa11.42□□□□□ -0.58
SNHG3-201ENST00000413987 GOLGA2Q08379 1002 aa11.41□□□□□ -0.58
SNHG3-201ENST00000413987 LMOD3Q0VAK6 560 aa11.41□□□□□ -0.58
SNHG3-201ENST00000413987 C9orf131Q5VYM1 1079 aa11.41□□□□□ -0.58
SNHG3-201ENST00000413987 ZKSCAN2Q63HK3 967 aa11.41□□□□□ -0.58
SNHG3-201ENST00000413987 TRIM34Q9BYJ4 488 aa11.41□□□□□ -0.58
SNHG3-201ENST00000413987 NUB1Q9Y5A7 615 aa11.41□□□□□ -0.58
SNHG3-201ENST00000413987 AHDC1Q5TGY3 1603 aaPredicted RBP11.41□□□□□ -0.58
SNHG3-201ENST00000413987 PPP1R12CQ9BZL4 782 aa11.41□□□□□ -0.58
SNHG3-201ENST00000413987 PRKAG2Q9UGJ0 569 aa11.41□□□□□ -0.58
SNHG3-201ENST00000413987 FRMD4BQ9Y2L6 1034 aa11.41□□□□□ -0.58
SNHG3-201ENST00000413987 ERBB3P21860 1342 aa11.41□□□□□ -0.58
SNHG3-201ENST00000413987 VIRMAQ69YN4 1812 aaKnown RBP11.41□□□□□ -0.58
SNHG3-201ENST00000413987 NUTM2BA6NNL0 878 aaPredicted RBP11.4□□□□□ -0.58
SNHG3-201ENST00000413987 NUTM2EB1AL46 878 aaPredicted RBP11.4□□□□□ -0.58
SNHG3-201ENST00000413987 PPP1R37O75864 691 aa11.4□□□□□ -0.58
SNHG3-201ENST00000413987 ADAMTS2O95450 1211 aa11.4□□□□□ -0.58
SNHG3-201ENST00000413987 NUTM2AQ8IVF1 878 aaPredicted RBP11.4□□□□□ -0.58
SNHG3-201ENST00000413987 TSR2Q969E8 191 aaKnown RBP11.4□□□□□ -0.58
SNHG3-201ENST00000413987 REPIN1Q9BWE0 567 aaKnown RBP11.4□□□□□ -0.58
SNHG3-201ENST00000413987 SLKQ9H2G2 1235 aaPredicted RBP11.4□□□□□ -0.58
SNHG3-201ENST00000413987 KIF24Q5T7B8 1368 aa11.4□□□□□ -0.58
SNHG3-201ENST00000413987 COL16A1Q07092 1604 aaPredicted RBP11.4□□□□□ -0.58
SNHG3-201ENST00000413987 GTF2F1P35269 517 aaKnown RBP eCLIP11.4□□□□□ -0.58
SNHG3-201ENST00000413987 KDRP35968 1356 aa11.4□□□□□ -0.58
SNHG3-201ENST00000413987 COL18A1P39060 1754 aa11.4□□□□□ -0.58
SNHG3-201ENST00000413987 NFE2L2Q16236 605 aa11.4□□□□□ -0.58
SNHG3-201ENST00000413987 MTHFSDQ2M296 383 aaKnown RBP11.4□□□□□ -0.58
SNHG3-201ENST00000413987 MCM10Q7L590 875 aa11.4□□□□□ -0.58
SNHG3-201ENST00000413987 PDCL3Q9H2J4 239 aa11.4□□□□□ -0.58
SNHG3-201ENST00000413987 STRN4Q9NRL3 753 aa11.4□□□□□ -0.58
SNHG3-201ENST00000413987 NLRP2Q9NX02 1062 aa11.4□□□□□ -0.58
SNHG3-201ENST00000413987 DLG5Q8TDM6 1919 aa11.39□□□□□ -0.59
SNHG3-201ENST00000413987 ATG7O95352 703 aa11.39□□□□□ -0.59
SNHG3-201ENST00000413987 MCM4P33991 863 aa11.39□□□□□ -0.59
SNHG3-201ENST00000413987 SLFN5Q08AF3 891 aa11.39□□□□□ -0.59
SNHG3-201ENST00000413987 RNF187Q5TA31 235 aaPredicted RBP11.39□□□□□ -0.59
SNHG3-201ENST00000413987 CREBRFQ8IUR6 639 aa11.39□□□□□ -0.59
SNHG3-201ENST00000413987 POLR3EQ9NVU0 708 aa11.39□□□□□ -0.59
SNHG3-201ENST00000413987 CAMTA1Q9Y6Y1 1673 aa11.39□□□□□ -0.59
SNHG3-201ENST00000413987 ESPNB1AK53 854 aa11.39□□□□□ -0.59
SNHG3-201ENST00000413987 DHX16O60231 1041 aaKnown RBP11.39□□□□□ -0.59
SNHG3-201ENST00000413987 CSPP1Q1MSJ5 1256 aa11.39□□□□□ -0.59
SNHG3-201ENST00000413987 MTMR14Q8NCE2 650 aa11.39□□□□□ -0.59
SNHG3-201ENST00000413987 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.39□□□□□ -0.59
SNHG3-201ENST00000413987 SPC25Q9HBM1 224 aa11.39□□□□□ -0.59
SNHG3-201ENST00000413987 TPX2Q9ULW0 747 aaKnown RBP11.39□□□□□ -0.59
SNHG3-201ENST00000413987 IQSEC3Q9UPP2 1182 aaPredicted RBP11.39□□□□□ -0.59
SNHG3-201ENST00000413987 AXDND1Q5T1B0 1012 aaPredicted RBP11.38□□□□□ -0.59
SNHG3-201ENST00000413987 FMNL3Q8IVF7 1028 aa11.38□□□□□ -0.59
SNHG3-201ENST00000413987 QTRT2Q9H974 415 aaKnown RBP11.38□□□□□ -0.59
SNHG3-201ENST00000413987 PCDH12Q9NPG4 1184 aa11.38□□□□□ -0.59
SNHG3-201ENST00000413987 RPUSD2Q8IZ73 545 aaKnown RBP11.37□□□□□ -0.59
SNHG3-201ENST00000413987 MFRPQ9BY79 579 aa11.37□□□□□ -0.59
SNHG3-201ENST00000413987 ZSWIM4Q9H7M6 989 aa11.37□□□□□ -0.59
SNHG3-201ENST00000413987 MAP3K20Q9NYL2 800 aaKnown RBP11.37□□□□□ -0.59
SNHG3-201ENST00000413987 CPDO75976 1380 aa11.37□□□□□ -0.59
SNHG3-201ENST00000413987 GTF2E1P29083 439 aaPredicted RBP11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms