RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 ZFP42Q96MM3 310 aa9.92□□□□□ -0.82
USP40-202ENST00000409945 STIM2Q9P246 746 aa9.92□□□□□ -0.82
USP40-202ENST00000409945 RBM25P49756 843 aaKnown RBP9.91□□□□□ -0.82
USP40-202ENST00000409945 NPAS4Q8IUM7 802 aa9.91□□□□□ -0.82
USP40-202ENST00000409945 TEX14Q8IWB6 1497 aa9.9□□□□□ -0.82
USP40-202ENST00000409945 SOBPA7XYQ1 873 aa9.9□□□□□ -0.82
USP40-202ENST00000409945 MAPK1P28482 360 aa9.9□□□□□ -0.82
USP40-202ENST00000409945 GPC1P35052 558 aa9.9□□□□□ -0.82
USP40-202ENST00000409945 NBPF10Q6P3W6 841 aaKnown RBP9.9□□□□□ -0.82
USP40-202ENST00000409945 NBPF15Q8N660 670 aa9.9□□□□□ -0.82
USP40-202ENST00000409945 AIDAQ96BJ3 306 aa9.9□□□□□ -0.82
USP40-202ENST00000409945 HSH2DQ96JZ2 352 aa9.9□□□□□ -0.82
USP40-202ENST00000409945 EPRSP07814 1512 aaKnown RBP9.9□□□□□ -0.82
USP40-202ENST00000409945 DNMT3LQ9UJW3 386 aa9.9□□□□□ -0.83
USP40-202ENST00000409945 TSPOAP1O95153 1857 aa9.9□□□□□ -0.83
USP40-202ENST00000409945 GFRA3O60609 400 aa9.89□□□□□ -0.83
USP40-202ENST00000409945 IGHA2P01877 340 aa9.89□□□□□ -0.83
USP40-202ENST00000409945 RTN1Q16799 776 aa9.89□□□□□ -0.83
USP40-202ENST00000409945 CDK11AQ9UQ88 783 aaPredicted RBP9.89□□□□□ -0.83
USP40-202ENST00000409945 SOS2Q07890 1332 aaPredicted RBP9.89□□□□□ -0.83
USP40-202ENST00000409945 PLEKHD1A6NEE1 506 aa9.88□□□□□ -0.83
USP40-202ENST00000409945 USP20Q9Y2K6 914 aa9.88□□□□□ -0.83
USP40-202ENST00000409945 TTLL8A6PVC2 850 aa9.88□□□□□ -0.83
USP40-202ENST00000409945 ATP10BO94823 1461 aa9.87□□□□□ -0.83
USP40-202ENST00000409945 SPATA31C2B4DYI2 1134 aa9.87□□□□□ -0.83
USP40-202ENST00000409945 TMC7Q7Z402 723 aa9.87□□□□□ -0.83
USP40-202ENST00000409945 DCTN4Q9UJW0 460 aa9.87□□□□□ -0.83
USP40-202ENST00000409945 KDM6BO15054 1643 aa9.87□□□□□ -0.83
USP40-202ENST00000409945 UPP2O95045 317 aa9.86□□□□□ -0.83
USP40-202ENST00000409945 GNASQ5JWF2 1037 aa9.86□□□□□ -0.83
USP40-202ENST00000409945 CFAP43Q8NDM7 1665 aa9.86□□□□□ -0.83
USP40-202ENST00000409945 FAM13AO94988 1023 aa9.86□□□□□ -0.83
USP40-202ENST00000409945 IFT43Q96FT9 208 aa9.86□□□□□ -0.83
USP40-202ENST00000409945 CHMP3Q9Y3E7 222 aa9.86□□□□□ -0.83
USP40-202ENST00000409945 CD109Q6YHK3 1445 aa9.86□□□□□ -0.83
USP40-202ENST00000409945 ARHGAP35Q9NRY4 1499 aa9.85□□□□□ -0.83
USP40-202ENST00000409945 HECW1Q76N89 1606 aa9.85□□□□□ -0.83
USP40-202ENST00000409945 SENP3-EIF4A1A0A087X0R7 540 aa9.85□□□□□ -0.83
USP40-202ENST00000409945 A6NHS1 94 aa9.85□□□□□ -0.83
USP40-202ENST00000409945 PKDCCQ504Y2 493 aa9.85□□□□□ -0.83
USP40-202ENST00000409945 LYSMD3Q7Z3D4 306 aa9.85□□□□□ -0.83
USP40-202ENST00000409945 AAASQ9NRG9 546 aa9.85□□□□□ -0.83
USP40-202ENST00000409945 MAP3K4Q9Y6R4 1608 aa9.85□□□□□ -0.83
USP40-202ENST00000409945 NUP153P49790 1475 aaKnown RBP9.85□□□□□ -0.83
USP40-202ENST00000409945 GPR182O15218 404 aa9.84□□□□□ -0.83
USP40-202ENST00000409945 C11orf91Q3C1V1 193 aa9.84□□□□□ -0.83
USP40-202ENST00000409945 ASB16Q96NS5 453 aa9.84□□□□□ -0.83
USP40-202ENST00000409945 GPAMQ9HCL2 828 aa9.84□□□□□ -0.83
USP40-202ENST00000409945 CLIP1P30622 1438 aa9.84□□□□□ -0.83
USP40-202ENST00000409945 GRNP28799 593 aaKnown RBP9.84□□□□□ -0.83
USP40-202ENST00000409945 TREML1Q86YW5 311 aa9.84□□□□□ -0.83
USP40-202ENST00000409945 DMGDHQ9UI17 866 aaKnown RBP9.84□□□□□ -0.83
USP40-202ENST00000409945 POLIQ9UNA4 740 aa9.84□□□□□ -0.83
USP40-202ENST00000409945 AXIN1O15169 862 aa9.83□□□□□ -0.84
USP40-202ENST00000409945 THBS1P07996 1170 aa9.83□□□□□ -0.84
USP40-202ENST00000409945 ZAP70P43403 619 aa9.83□□□□□ -0.84
USP40-202ENST00000409945 SMCPP49901 116 aaPredicted RBP9.83□□□□□ -0.84
USP40-202ENST00000409945 SETDB2Q96T68 719 aa9.83□□□□□ -0.84
USP40-202ENST00000409945 RNF19AQ9NV58 838 aa9.83□□□□□ -0.84
USP40-202ENST00000409945 LCE2BO14633 110 aa9.82□□□□□ -0.84
USP40-202ENST00000409945 RGS20O76081 388 aa9.82□□□□□ -0.84
USP40-202ENST00000409945 AAMPQ13685 434 aa9.82□□□□□ -0.84
USP40-202ENST00000409945 RHPN1Q8TCX5 695 aa9.82□□□□□ -0.84
USP40-202ENST00000409945 SUSD3Q96L08 255 aa9.82□□□□□ -0.84
USP40-202ENST00000409945 MAGI3Q5TCQ9 1506 aa9.82□□□□□ -0.84
USP40-202ENST00000409945 OPLAHO14841 1288 aa9.82□□□□□ -0.84
USP40-202ENST00000409945 ZNF16P17020 682 aaPredicted RBP9.82□□□□□ -0.84
USP40-202ENST00000409945 BRD2P25440 801 aaKnown RBP9.82□□□□□ -0.84
USP40-202ENST00000409945 DNM1Q05193 864 aaKnown RBP9.82□□□□□ -0.84
USP40-202ENST00000409945 C1orf53Q5VUE5 145 aa9.82□□□□□ -0.84
USP40-202ENST00000409945 FBXO33Q7Z6M2 555 aa9.82□□□□□ -0.84
USP40-202ENST00000409945 HCN2Q9UL51 889 aa9.82□□□□□ -0.84
USP40-202ENST00000409945 PHLDB1Q86UU1 1377 aa9.81□□□□□ -0.84
USP40-202ENST00000409945 NRG2O14511 850 aaPredicted RBP9.81□□□□□ -0.84
USP40-202ENST00000409945 P4HBP07237 508 aaKnown RBP9.81□□□□□ -0.84
USP40-202ENST00000409945 MSX1P28360 303 aa9.81□□□□□ -0.84
USP40-202ENST00000409945 LRRC69Q6ZNQ3 347 aa9.81□□□□□ -0.84
USP40-202ENST00000409945 GPR152Q8TDT2 470 aa9.81□□□□□ -0.84
USP40-202ENST00000409945 GIPC2Q8TF65 315 aa9.81□□□□□ -0.84
USP40-202ENST00000409945 EDEM1Q92611 657 aa9.81□□□□□ -0.84
USP40-202ENST00000409945 RUBCNLQ9H714 662 aa9.81□□□□□ -0.84
USP40-202ENST00000409945 ATP13A2Q9NQ11 1180 aa9.81□□□□□ -0.84
USP40-202ENST00000409945 RGL4Q8IZJ4 473 aa9.8□□□□□ -0.84
USP40-202ENST00000409945 CRIPAKQ8N1N5 446 aa9.8□□□□□ -0.84
USP40-202ENST00000409945 ZIC5Q96T25 663 aa9.8□□□□□ -0.84
USP40-202ENST00000409945 RBCK1Q9BYM8 510 aa9.8□□□□□ -0.84
USP40-202ENST00000409945 TIMMDC1Q9NPL8 285 aa9.8□□□□□ -0.84
USP40-202ENST00000409945 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.8□□□□□ -0.84
USP40-202ENST00000409945 KIAA1522Q9P206 1035 aaPredicted RBP9.8□□□□□ -0.84
USP40-202ENST00000409945 CCDC18Q5T9S5 1454 aa9.8□□□□□ -0.84
USP40-202ENST00000409945 RBM47A0AV96 593 aaKnown RBP9.8□□□□□ -0.84
USP40-202ENST00000409945 DGAT1O75907 488 aa9.8□□□□□ -0.84
USP40-202ENST00000409945 GTF2E1P29083 439 aaPredicted RBP9.8□□□□□ -0.84
USP40-202ENST00000409945 NBPF1Q3BBV0 1214 aa9.8□□□□□ -0.84
USP40-202ENST00000409945 ABCA9Q8IUA7 1624 aa9.8□□□□□ -0.84
USP40-202ENST00000409945 BCL2L13Q9BXK5 485 aa9.8□□□□□ -0.84
USP40-202ENST00000409945 GGNBP2Q9H3C7 697 aa9.8□□□□□ -0.84
USP40-202ENST00000409945 PDGFAP04085 211 aa9.79□□□□□ -0.84
USP40-202ENST00000409945 SCARF1Q14162 830 aa9.79□□□□□ -0.84
USP40-202ENST00000409945 ZDHHC3Q9NYG2 299 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms