RNA–Protein interactions for RNA: ENST00000584760.1

SREBF1-223, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-223	ENST00000584760	IGLV3-32	A0A0A0MS00	114 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	NKX2-6	A6NCS4	301 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	FAM47E-STBD1	D6RA91	191 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	SDHD	O14521	159 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	ZIC3	O60481	467 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	KCNK2	O95069	426 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	EPPIN	O95925	133 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	HMGN2	P05204	90 aa	Known RBP	12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	NGFR	P08138	427 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	ZFP36L2	P47974	494 aa	Known RBP	12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	PRIM2	P49643	509 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	WNT3	P56703	355 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	B3GALT5-AS1	P59052	145 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	HBA1	P69905	142 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	STX5	Q13190	355 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	CPEB4	Q17RY0	729 aa	Known RBP eCLIP	12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	GRAMD1B	Q3KR37	738 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	NSUN5P2	Q63ZY6	315 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	OGFOD2	Q6N063	350 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	APOOL	Q6UXV4	268 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	ZAR1	Q86SH2	424 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	GALNT10	Q86SR1	603 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	TMEM200A	Q86VY9	491 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	LACC1	Q8IV20	430 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	LIX1L	Q8IVB5	337 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	NAXE	Q8NCW5	288 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	OR4K17	Q8NGC6	315 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	OR10Q1	Q8NGQ4	319 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	RAB3IL1	Q8TBN0	382 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	SFXN5	Q8TD22	340 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	NRGN	Q92686	78 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	DTNBP1	Q96EV8	351 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	STAC	Q99469	402 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	YIPF4	Q9BSR8	244 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	TMUB1	Q9BVT8	246 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	UCK2	Q9BZX2	261 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	DUSP22	Q9NRW4	184 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	THAP1	Q9NVV9	213 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	GPATCH2	Q9NW75	528 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	NKIRAS1	Q9NYS0	192 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	DKKL1	Q9UK85	242 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	CAMK2A	Q9UQM7	478 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	SNX8	Q9Y5X2	465 aa		12.07	□□□□□ -0.48
SREBF1-223	ENST00000584760	CD8B2	A6NJW9	211 aa		12.06	□□□□□ -0.48
SREBF1-223	ENST00000584760	ALG1L2	C9J202	215 aa		12.06	□□□□□ -0.48
SREBF1-223	ENST00000584760	OXSR1	O95747	527 aa	Predicted RBP	12.06	□□□□□ -0.48
SREBF1-223	ENST00000584760	ALOX5	P09917	674 aa		12.06	□□□□□ -0.48
SREBF1-223	ENST00000584760	ALDOC	P09972	364 aa	Known RBP	12.06	□□□□□ -0.48
SREBF1-223	ENST00000584760	CPN1	P15169	458 aa		12.06	□□□□□ -0.48
SREBF1-223	ENST00000584760	LBP	P18428	481 aa		12.06	□□□□□ -0.48
SREBF1-223	ENST00000584760	DPP4	P27487	766 aa		12.06	□□□□□ -0.48
SREBF1-223	ENST00000584760	MSX1	P28360	303 aa		12.06	□□□□□ -0.48
SREBF1-223	ENST00000584760	GCK	P35557	465 aa		12.06	□□□□□ -0.48
SREBF1-223	ENST00000584760	TIMP3	P35625	211 aa		12.06	□□□□□ -0.48
SREBF1-223	ENST00000584760	CCT3	P49368	545 aa	Known RBP	12.06	□□□□□ -0.48
SREBF1-223	ENST00000584760	LHX2	P50458	406 aa		12.06	□□□□□ -0.48
SREBF1-223	ENST00000584760	DSCR4	P56555	118 aa	Predicted RBP	12.06	□□□□□ -0.48
SREBF1-223	ENST00000584760	OCRL	Q01968	901 aa		12.06	□□□□□ -0.48
SREBF1-223	ENST00000584760	TP53BP2	Q13625	1128 aa		12.06	□□□□□ -0.48
SREBF1-223	ENST00000584760	GANAB	Q14697	944 aa	Known RBP	12.06	□□□□□ -0.48
SREBF1-223	ENST00000584760	LSM12	Q3MHD2	195 aa	Known RBP	12.06	□□□□□ -0.48
SREBF1-223	ENST00000584760	AGBL2	Q5U5Z8	902 aa		12.06	□□□□□ -0.48
SREBF1-223	ENST00000584760	OR4F3	Q6IEY1	312 aa		12.06	□□□□□ -0.48
SREBF1-223	ENST00000584760	CDC73	Q6P1J9	531 aa		12.06	□□□□□ -0.48
SREBF1-223	ENST00000584760	FIGNL1	Q6PIW4	674 aa		12.06	□□□□□ -0.48
SREBF1-223	ENST00000584760	MARCH3	Q86UD3	253 aa		12.06	□□□□□ -0.48
SREBF1-223	ENST00000584760	TRIM42	Q8IWZ5	723 aa		12.06	□□□□□ -0.48
SREBF1-223	ENST00000584760	CLECL1	Q8IZS7	167 aa		12.06	□□□□□ -0.48
SREBF1-223	ENST00000584760	COX18	Q8N8Q8	333 aa		12.06	□□□□□ -0.48
SREBF1-223	ENST00000584760	OR8J2	Q8NGG1	315 aa		12.06	□□□□□ -0.48
SREBF1-223	ENST00000584760	OR56A1	Q8NGH5	318 aa		12.06	□□□□□ -0.48
SREBF1-223	ENST00000584760	JADE3	Q92613	823 aa		12.06	□□□□□ -0.48
SREBF1-223	ENST00000584760	SFXN2	Q96NB2	322 aa		12.06	□□□□□ -0.48
SREBF1-223	ENST00000584760	G6PC3	Q9BUM1	346 aa		12.06	□□□□□ -0.48
SREBF1-223	ENST00000584760	TBL1XR1	Q9BZK7	514 aa		12.06	□□□□□ -0.48
SREBF1-223	ENST00000584760	DSN1	Q9H410	356 aa		12.06	□□□□□ -0.48
SREBF1-223	ENST00000584760	PIGU	Q9H490	435 aa		12.06	□□□□□ -0.48
SREBF1-223	ENST00000584760	KCNJ16	Q9NPI9	418 aa		12.06	□□□□□ -0.48
SREBF1-223	ENST00000584760	SDHAF3	Q9NRP4	125 aa		12.06	□□□□□ -0.48
SREBF1-223	ENST00000584760	FBXO34	Q9NWN3	711 aa		12.06	□□□□□ -0.48
SREBF1-223	ENST00000584760	GIN1	Q9NXP7	522 aa		12.06	□□□□□ -0.48
SREBF1-223	ENST00000584760	MBD3L4	A6NDZ8	208 aa	Predicted RBP	12.05	□□□□□ -0.48
SREBF1-223	ENST00000584760	MBD3L3	A6NE82	208 aa	Predicted RBP	12.05	□□□□□ -0.48
SREBF1-223	ENST00000584760	MBD3L5	A6NJ08	208 aa	Predicted RBP	12.05	□□□□□ -0.48
SREBF1-223	ENST00000584760	RNASET2	O00584	256 aa	Known RBP	12.05	□□□□□ -0.48
SREBF1-223	ENST00000584760	HDAC3	O15379	428 aa		12.05	□□□□□ -0.48
SREBF1-223	ENST00000584760	ANGPTL1	O95841	491 aa		12.05	□□□□□ -0.48
SREBF1-223	ENST00000584760	ZNF708	P17019	499 aa		12.05	□□□□□ -0.48
SREBF1-223	ENST00000584760	TBXA2R	P21731	343 aa		12.05	□□□□□ -0.48
SREBF1-223	ENST00000584760	TCEA1	P23193	301 aa	Known RBP	12.05	□□□□□ -0.48
SREBF1-223	ENST00000584760	CHM	P24386	653 aa		12.05	□□□□□ -0.48
SREBF1-223	ENST00000584760	LCN1	P31025	176 aa		12.05	□□□□□ -0.48
SREBF1-223	ENST00000584760	DNAJA1	P31689	397 aa	Known RBP	12.05	□□□□□ -0.48
SREBF1-223	ENST00000584760	CEACAM8	P31997	349 aa	Predicted RBP	12.05	□□□□□ -0.48
SREBF1-223	ENST00000584760	CLK3	P49761	638 aa	Known RBP	12.05	□□□□□ -0.48
SREBF1-223	ENST00000584760	IST1	P53990	364 aa		12.05	□□□□□ -0.48
SREBF1-223	ENST00000584760	CLDN18	P56856	261 aa		12.05	□□□□□ -0.48
SREBF1-223	ENST00000584760	C17orf67	Q0P5P2	114 aa		12.05	□□□□□ -0.48
SREBF1-223	ENST00000584760	SF3B4	Q15427	424 aa	Known RBP eCLIP	12.05	□□□□□ -0.48	3e-9	■■■■■ 38.5
SREBF1-223	ENST00000584760	PGS1	Q32NB8	556 aa		12.05	□□□□□ -0.48

Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms