RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 GIT2Q14161 759 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 MXD4Q14582 209 aaPredicted RBP1.58□□□□□ -2.16
NUP54-208ENST00000508604 CASP8Q14790 479 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 RGS21Q2M5E4 152 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 ANKRD55Q3KP44 614 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 CMPK2Q5EBM0 449 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 PAGE2BQ5JRK9 111 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 LRRC73Q5JTD7 316 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 PLPP4Q5VZY2 271 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 SPECC1LQ69YQ0 1117 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 PDPK2PQ6A1A2 396 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 ATL3Q6DD88 541 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 CWC27Q6UX04 472 aaKnown RBP1.58□□□□□ -2.16
NUP54-208ENST00000508604 OLFM4Q6UX06 510 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 ZNF730Q6ZMV8 503 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 GALNTL5Q7Z4T8 443 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 ABI3BPQ7Z7G0 1075 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 AKAP14Q86UN6 197 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 COMTD1Q86VU5 262 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 ERICH1Q86X53 443 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 STX12Q86Y82 276 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 CD302Q8IX05 232 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 ST13P4Q8IZP2 240 aaPredicted RBP1.58□□□□□ -2.16
NUP54-208ENST00000508604 ZNF491Q8N8L2 437 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 NAT8LQ8N9F0 302 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 STKLD1Q8NE28 680 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 DENND6BQ8NEG7 585 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 OR7G1Q8NGA0 311 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 ANGPTL6Q8NI99 470 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 SLC22A8Q8TCC7 542 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 RAPGEF5Q92565 580 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 C19orf60Q96EN9 201 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 ANKRD36BP1Q96IX9 119 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 VPS39Q96JC1 886 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 C7orf34Q96L11 122 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 C9orf16Q9BUW7 83 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 SHCBP1LQ9BZQ2 653 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 FAM192AQ9GZU8 254 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 UBQLN3Q9H347 655 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 C5orf66Q9H5L9 145 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 XKR8Q9H6D3 395 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 LRRC19Q9H756 370 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 NTN4Q9HB63 628 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 FANCEQ9HB96 536 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 ZNF331Q9NQX6 463 aaPredicted RBP1.58□□□□□ -2.16
NUP54-208ENST00000508604 ARMC1Q9NVT9 282 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 RMND1Q9NWS8 449 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP1.58□□□□□ -2.16
NUP54-208ENST00000508604 SLC7A8Q9UHI5 535 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 PTBP2Q9UKA9 531 aaKnown RBP1.58□□□□□ -2.16
NUP54-208ENST00000508604 CBY1Q9Y3M2 126 aa1.58□□□□□ -2.16
NUP54-208ENST00000508604 KIF24Q5T7B8 1368 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 ANKRD36BQ8N2N9 1353 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 ERBINQ96RT1 1412 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 GAPVD1Q14C86 1478 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 SCAF11Q99590 1463 aaKnown RBP1.57□□□□□ -2.16
NUP54-208ENST00000508604 ABCC9O60706 1549 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 CTTNBP2Q8WZ74 1663 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 A0A087WV48 116 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 OR6C74A6NCV1 312 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 C5orf52A6NGY3 159 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 LRRIQ4A6NIV6 560 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 GOLGA8JA6NMD2 632 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 ANXA2P2A6NMY6 339 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 SNTNA6NMZ2 147 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 CENPBD1B2RD01 187 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 HIP1O00291 1037 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 RIPK2O43353 540 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 B4GAT1O43505 415 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 ACSL4O60488 711 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 DUSP11O75319 330 aaKnown RBP1.57□□□□□ -2.16
NUP54-208ENST00000508604 SIX3O95343 332 aaPredicted RBP1.57□□□□□ -2.16
NUP54-208ENST00000508604 ADCY5O95622 1261 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 MBD3O95983 291 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 HMGN1P05114 100 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 RPS17P08708 135 aaKnown RBP1.57□□□□□ -2.16
NUP54-208ENST00000508604 POLR2MP0CAP2 368 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 GSTT2P0CG29 244 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 GSTT2BP0CG30 244 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 PRKACAP17612 351 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 ATF6P18850 670 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 CASTP20810 708 aaKnown RBP1.57□□□□□ -2.16
NUP54-208ENST00000508604 DNAJB1P25685 340 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 PSMB4P28070 264 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 TIA1P31483 386 aaKnown RBP eCLIP1.57□□□□□ -2.16
NUP54-208ENST00000508604 GDI2P50395 445 aaKnown RBP1.57□□□□□ -2.16
NUP54-208ENST00000508604 TKTL1P51854 596 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 CCNG1P51959 295 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 RAB14P61106 215 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 NOP14P78316 857 aaKnown RBP1.57□□□□□ -2.16
NUP54-208ENST00000508604 IL1RL1Q01638 556 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 ZNF45Q02386 682 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 PLOD1Q02809 727 aaPredicted RBP1.57□□□□□ -2.16
NUP54-208ENST00000508604 CDC20Q12834 499 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 RIPK1Q13546 671 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 EMC2Q15006 297 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 NCF4Q15080 339 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 ALX1Q15699 326 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 TSC22D1Q15714 1073 aa1.57□□□□□ -2.16
NUP54-208ENST00000508604 KYAT1Q16773 422 aa1.57□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms