RNA–Protein interactions for RNA: ENST00000356083.7

COL27A1-201, Transcript of collagen type XXVII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL27A1, Length 7,790 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-201ENST00000356083 FJX1Q86VR8 437 aa16.37■□□□□ 0.21
COL27A1-201ENST00000356083 ZNF679Q8IYX0 411 aa16.37■□□□□ 0.21
COL27A1-201ENST00000356083 AQP7O14520 342 aa16.37■□□□□ 0.21
COL27A1-201ENST00000356083 ALDOAP04075 364 aaKnown RBP16.37■□□□□ 0.21
COL27A1-201ENST00000356083 ZNF888P0CJ79 500 aaPredicted RBP16.37■□□□□ 0.21
COL27A1-201ENST00000356083 SF3B4Q15427 424 aaKnown RBP eCLIP16.37■□□□□ 0.211e-6■■■□□ 18.7
COL27A1-201ENST00000356083 ILDR1Q86SU0 546 aaPredicted RBP16.37■□□□□ 0.21
COL27A1-201ENST00000356083 HS3ST5Q8IZT8 346 aa16.37■□□□□ 0.21
COL27A1-201ENST00000356083 CNIH3Q8TBE1 160 aa16.37■□□□□ 0.21
COL27A1-201ENST00000356083 TRBV11-1A0A0K0K1C0 115 aa16.37■□□□□ 0.21
COL27A1-201ENST00000356083 UBFD1O14562 309 aaKnown RBP16.37■□□□□ 0.21
COL27A1-201ENST00000356083 PCDH17O14917 1159 aa16.37■□□□□ 0.21
COL27A1-201ENST00000356083 TCAPO15273 167 aa16.37■□□□□ 0.21
COL27A1-201ENST00000356083 TNFRSF1BP20333 461 aa16.37■□□□□ 0.21
COL27A1-201ENST00000356083 EXOSC6Q5RKV6 272 aaKnown RBP16.37■□□□□ 0.21
COL27A1-201ENST00000356083 MOB3CQ70IA8 216 aa16.37■□□□□ 0.21
COL27A1-201ENST00000356083 PRICKLE2Q7Z3G6 844 aa16.37■□□□□ 0.21
COL27A1-201ENST00000356083 FAM185AQ8N0U4 392 aa16.37■□□□□ 0.21
COL27A1-201ENST00000356083 FAIMQ9NVQ4 179 aa16.37■□□□□ 0.21
COL27A1-201ENST00000356083 COL20A1Q9P218 1284 aa16.37■□□□□ 0.21
COL27A1-201ENST00000356083 COCHO43405 550 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 RAD52P43351 418 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 NKX3-2P78367 333 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 PPP1R3AQ16821 1122 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 WDR53Q7Z5U6 358 aaPredicted RBP16.36■□□□□ 0.21
COL27A1-201ENST00000356083 ZFYVE21Q9BQ24 234 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 FOLH1BQ9HBA9 442 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 ZNF286AQ9HBT8 521 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 GIMAP2Q9UG22 337 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 PIKFYVEQ9Y2I7 2098 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 PIGBOS1A0A0B4J2F0 54 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 SLC19A2O60779 497 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 HLA-FP30511 346 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 TUBA3CQ13748 450 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 MAMDC2Q7Z304 686 aaPredicted RBP16.36■□□□□ 0.21
COL27A1-201ENST00000356083 PSMF1Q92530 271 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 LRCH3Q96II8 777 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 TP53BP1Q12888 1972 aaPredicted RBP16.36■□□□□ 0.21
COL27A1-201ENST00000356083 EMC8O43402 210 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 SEC14L2O76054 403 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 C8BP07358 591 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 GSK3BP49841 420 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 HSD17B7P56937 341 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 PDE7AQ13946 482 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 S100A7AQ86SG5 101 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 BPIFA2Q96DR5 249 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 UNKLQ9H9P5 680 aaKnown RBP16.36■□□□□ 0.21
COL27A1-201ENST00000356083 USP31Q70CQ4 1352 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 SGK494L7N484 410 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 SIM1P81133 766 aaPredicted RBP16.36■□□□□ 0.21
COL27A1-201ENST00000356083 TRAM1Q15629 374 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 C14orf28Q4W4Y0 310 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 RABL3Q5HYI8 236 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 ZNF783Q6ZMS7 281 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 METTL4Q8N3J2 472 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 TBC1D20Q96BZ9 403 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 ZNF559Q9BR84 538 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 BET1O15155 118 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 YIF1AO95070 293 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 FAM163BP0C2L3 166 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 ZNF468Q5VIY5 522 aaPredicted RBP16.36■□□□□ 0.21
COL27A1-201ENST00000356083 TMEM110Q86TL2 294 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 DHRS9Q9BPW9 319 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 SCGB1D1O95968 90 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 MT-ND2P03891 347 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 MAP4K2Q12851 820 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 CST6Q15828 149 aa16.36■□□□□ 0.21
COL27A1-201ENST00000356083 LARP4Q71RC2 724 aaKnown RBP eCLIP16.36■□□□□ 0.21
COL27A1-201ENST00000356083 FAM163AQ96GL9 167 aaPredicted RBP16.36■□□□□ 0.21
COL27A1-201ENST00000356083 INMT-MINDY4F8WBC2 141 aa16.35■□□□□ 0.21
COL27A1-201ENST00000356083 POU2F2P09086 479 aa16.35■□□□□ 0.21
COL27A1-201ENST00000356083 RABIFP47224 123 aa16.35■□□□□ 0.21
COL27A1-201ENST00000356083 TMEM173Q86WV6 379 aaPredicted RBP16.35■□□□□ 0.21
COL27A1-201ENST00000356083 MAL2Q969L2 176 aa16.35■□□□□ 0.21
COL27A1-201ENST00000356083 S100A7P31151 101 aa16.35■□□□□ 0.21
COL27A1-201ENST00000356083 RPL23AP62750 156 aaKnown RBP16.35■□□□□ 0.21
COL27A1-201ENST00000356083 LMAN2Q12907 356 aa16.35■□□□□ 0.21
COL27A1-201ENST00000356083 ZNF404Q494X3 552 aa16.35■□□□□ 0.21
COL27A1-201ENST00000356083 ZNF585AQ6P3V2 769 aa16.35■□□□□ 0.21
COL27A1-201ENST00000356083 OR51D1Q8NGF3 324 aa16.35■□□□□ 0.21
COL27A1-201ENST00000356083 TRMT2BQ96GJ1 504 aaKnown RBP16.35■□□□□ 0.21
COL27A1-201ENST00000356083 LIN28AQ9H9Z2 209 aaKnown RBP16.35■□□□□ 0.21
COL27A1-201ENST00000356083 BIN3Q9NQY0 253 aa16.35■□□□□ 0.21
COL27A1-201ENST00000356083 B3GNT3Q9Y2A9 372 aa16.35■□□□□ 0.21
COL27A1-201ENST00000356083 TRAV18A0A075B6X5 111 aa16.35■□□□□ 0.21
COL27A1-201ENST00000356083 OR5K4A6NMS3 321 aa16.35■□□□□ 0.21
COL27A1-201ENST00000356083 C12orf71A8MTZ7 269 aa16.35■□□□□ 0.21
COL27A1-201ENST00000356083 DFNA5O60443 496 aa16.35■□□□□ 0.21
COL27A1-201ENST00000356083 OR10J4P0C629 311 aa16.35■□□□□ 0.21
COL27A1-201ENST00000356083 NADK2Q4G0N4 442 aa16.35■□□□□ 0.21
COL27A1-201ENST00000356083 OR4C11Q6IEV9 310 aa16.35■□□□□ 0.21
COL27A1-201ENST00000356083 KCTD20Q7Z5Y7 419 aa16.35■□□□□ 0.21
COL27A1-201ENST00000356083 BIRC7Q96CA5 298 aa16.35■□□□□ 0.21
COL27A1-201ENST00000356083 RAB39BQ96DA2 213 aa16.35■□□□□ 0.21
COL27A1-201ENST00000356083 BTBD2Q9BX70 525 aa16.35■□□□□ 0.21
COL27A1-201ENST00000356083 OR10A5Q9H207 317 aa16.35■□□□□ 0.21
COL27A1-201ENST00000356083 OR10A2Q9H208 303 aa16.35■□□□□ 0.21
COL27A1-201ENST00000356083 KLHL21Q9UJP4 597 aa16.35■□□□□ 0.21
COL27A1-201ENST00000356083 STUB1Q9UNE7 303 aa16.35■□□□□ 0.21
COL27A1-201ENST00000356083 NUDT7P0C024 238 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms