RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 SELENONQ9NZV5 590 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 RHCGQ9UBD6 479 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 MKLN1Q9UL63 735 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 PNMA8BQ9ULN7 279 aaPredicted RBP13.87□□□□□ -0.19
USP4-203ENST00000415188 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.87□□□□□ -0.19
USP4-203ENST00000415188 A4GNTQ9UNA3 340 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 RPL36Q9Y3U8 105 aaKnown RBP13.87□□□□□ -0.19
USP4-203ENST00000415188 PLEKHM1Q9Y4G2 1056 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 PMF1-BGLAPU3KQ54 211 aa13.87□□□□□ -0.19
USP4-203ENST00000415188 URB1O60287 2271 aaKnown RBP13.86□□□□□ -0.19
USP4-203ENST00000415188 NBEAQ8NFP9 2946 aa13.86□□□□□ -0.19
USP4-203ENST00000415188 ADAMTS20P59510 1910 aa13.86□□□□□ -0.19
USP4-203ENST00000415188 LY6G6EA0A0G2JKS1 128 aa13.86□□□□□ -0.19
USP4-203ENST00000415188 A0A0G2JN53 185 aa13.86□□□□□ -0.19
USP4-203ENST00000415188 PRAMEF27A3QJZ7 478 aa13.86□□□□□ -0.19
USP4-203ENST00000415188 METTL15A6NJ78 407 aa13.86□□□□□ -0.19
USP4-203ENST00000415188 OR52A4PA6NMU1 304 aa13.86□□□□□ -0.19
USP4-203ENST00000415188 SCAMP1O15126 338 aa13.86□□□□□ -0.19
USP4-203ENST00000415188 MAGEB3O15480 346 aa13.86□□□□□ -0.19
USP4-203ENST00000415188 NME6O75414 186 aaPredicted RBP13.86□□□□□ -0.19
USP4-203ENST00000415188 PTHP01270 115 aa13.86□□□□□ -0.19
USP4-203ENST00000415188 CSF2P04141 144 aa13.86□□□□□ -0.19
USP4-203ENST00000415188 CHRM5P08912 532 aaPredicted RBP13.86□□□□□ -0.19
USP4-203ENST00000415188 NME1P15531 152 aaKnown RBP13.86□□□□□ -0.19
USP4-203ENST00000415188 MPIP34949 423 aa13.86□□□□□ -0.19
USP4-203ENST00000415188 RGS6P49758 472 aa13.86□□□□□ -0.19
USP4-203ENST00000415188 HNRNPKP61978 463 aaKnown RBP eCLIP13.86□□□□□ -0.19
USP4-203ENST00000415188 EIF2B5Q13144 721 aaKnown RBP13.86□□□□□ -0.19
USP4-203ENST00000415188 NCF4Q15080 339 aa13.86□□□□□ -0.19
USP4-203ENST00000415188 SEC23BQ15437 767 aa13.86□□□□□ -0.19
USP4-203ENST00000415188 SYT16Q17RD7 645 aa13.86□□□□□ -0.19
USP4-203ENST00000415188 SZRD1Q7Z422 152 aa13.86□□□□□ -0.19
USP4-203ENST00000415188 PARGQ86W56 976 aa13.86□□□□□ -0.19
USP4-203ENST00000415188 OR8K5Q8NH50 307 aa13.86□□□□□ -0.19
USP4-203ENST00000415188 VANGL1Q8TAA9 524 aaPredicted RBP13.86□□□□□ -0.19
USP4-203ENST00000415188 KLHL6Q8WZ60 621 aa13.86□□□□□ -0.19
USP4-203ENST00000415188 RPL3LQ92901 407 aaKnown RBP13.86□□□□□ -0.19
USP4-203ENST00000415188 NXPE2Q96DL1 559 aa13.86□□□□□ -0.19
USP4-203ENST00000415188 DSN1Q9H410 356 aa13.86□□□□□ -0.19
USP4-203ENST00000415188 ANKRD19PQ9H560 264 aa13.86□□□□□ -0.19
USP4-203ENST00000415188 FGF22Q9HCT0 170 aa13.86□□□□□ -0.19
USP4-203ENST00000415188 AMBNQ9NP70 447 aa13.86□□□□□ -0.19
USP4-203ENST00000415188 PRDM8Q9NQV8 689 aa13.86□□□□□ -0.19
USP4-203ENST00000415188 RHBDL2Q9NX52 303 aa13.86□□□□□ -0.19
USP4-203ENST00000415188 NLGN3Q9NZ94 848 aa13.86□□□□□ -0.19
USP4-203ENST00000415188 ANKMY1Q9P2S6 941 aa13.86□□□□□ -0.19
USP4-203ENST00000415188 ATG4BQ9Y4P1 393 aa13.86□□□□□ -0.19
USP4-203ENST00000415188 U3KQA8 63 aa13.86□□□□□ -0.19
USP4-203ENST00000415188 MDC1Q14676 2089 aaKnown RBP13.85□□□□□ -0.19
USP4-203ENST00000415188 IRGMA1A4Y4 181 aa13.85□□□□□ -0.19
USP4-203ENST00000415188 SAGE2PA6NJ88 616 aa13.85□□□□□ -0.19
USP4-203ENST00000415188 ZW10O43264 779 aa13.85□□□□□ -0.19
USP4-203ENST00000415188 PROM1O43490 865 aa13.85□□□□□ -0.19
USP4-203ENST00000415188 ERAL1O75616 437 aaKnown RBP13.85□□□□□ -0.19
USP4-203ENST00000415188 AGR2O95994 175 aa13.85□□□□□ -0.19
USP4-203ENST00000415188 CHRM4P08173 479 aa13.85□□□□□ -0.19
USP4-203ENST00000415188 CKMT1AP12532 417 aa13.85□□□□□ -0.19
USP4-203ENST00000415188 BMP4P12644 408 aa13.85□□□□□ -0.19
USP4-203ENST00000415188 POU1F1P28069 291 aa13.85□□□□□ -0.19
USP4-203ENST00000415188 CSTF2P33240 577 aaKnown RBP eCLIP13.85□□□□□ -0.19
USP4-203ENST00000415188 IFNGR2P38484 337 aa13.85□□□□□ -0.19
USP4-203ENST00000415188 NFATC4Q14934 902 aa13.85□□□□□ -0.19
USP4-203ENST00000415188 KIR2DS3Q14952 304 aa13.85□□□□□ -0.19
USP4-203ENST00000415188 OXA1LQ15070 435 aa13.85□□□□□ -0.19
USP4-203ENST00000415188 TRIM16LQ309B1 348 aa13.85□□□□□ -0.19
USP4-203ENST00000415188 ENTPD8Q5MY95 495 aa13.85□□□□□ -0.19
USP4-203ENST00000415188 TMEM236Q5W0B7 351 aa13.85□□□□□ -0.19
USP4-203ENST00000415188 ZBTB46Q86UZ6 589 aa13.85□□□□□ -0.19
USP4-203ENST00000415188 AMIGO1Q86WK6 493 aa13.85□□□□□ -0.19
USP4-203ENST00000415188 OR4D11Q8NGI4 311 aa13.85□□□□□ -0.19
USP4-203ENST00000415188 LCN9Q8WX39 176 aa13.85□□□□□ -0.19
USP4-203ENST00000415188 CNRIP1Q96F85 164 aaPredicted RBP13.85□□□□□ -0.19
USP4-203ENST00000415188 WDR92Q96MX6 357 aa13.85□□□□□ -0.19
USP4-203ENST00000415188 DCBLD2Q96PD2 775 aa13.85□□□□□ -0.19
USP4-203ENST00000415188 ARHGDIGQ99819 225 aa13.85□□□□□ -0.19
USP4-203ENST00000415188 POLDIP3Q9BY77 421 aaKnown RBP13.85□□□□□ -0.19
USP4-203ENST00000415188 TWSG1Q9GZX9 223 aa13.85□□□□□ -0.19
USP4-203ENST00000415188 TCEAL2Q9H3H9 227 aaPredicted RBP13.85□□□□□ -0.19
USP4-203ENST00000415188 PHF11Q9UIL8 331 aa13.85□□□□□ -0.19
USP4-203ENST00000415188 CLCA2Q9UQC9 943 aa13.85□□□□□ -0.19
USP4-203ENST00000415188 IFT52Q9Y366 437 aa13.85□□□□□ -0.19
USP4-203ENST00000415188 ZNF780BQ9Y6R6 833 aa13.85□□□□□ -0.19
USP4-203ENST00000415188 SNRNP200O75643 2136 aaKnown RBP13.84□□□□□ -0.19
USP4-203ENST00000415188 GSAPA4D1B5 854 aa13.84□□□□□ -0.19
USP4-203ENST00000415188 ISM1B1AKI9 464 aa13.84□□□□□ -0.19
USP4-203ENST00000415188 C4orf51C9J302 202 aa13.84□□□□□ -0.19
USP4-203ENST00000415188 TOR1BO14657 336 aa13.84□□□□□ -0.19
USP4-203ENST00000415188 TNFRSF10CO14798 259 aa13.84□□□□□ -0.19
USP4-203ENST00000415188 PPM1DO15297 605 aa13.84□□□□□ -0.19
USP4-203ENST00000415188 SEMA7AO75326 666 aa13.84□□□□□ -0.19
USP4-203ENST00000415188 MT-CO3P00414 261 aa13.84□□□□□ -0.19
USP4-203ENST00000415188 HMGN2P05204 90 aaKnown RBP13.84□□□□□ -0.19
USP4-203ENST00000415188 NR2F6P10588 404 aa13.84□□□□□ -0.19
USP4-203ENST00000415188 ALPPL2P10696 532 aa13.84□□□□□ -0.19
USP4-203ENST00000415188 CERS1P27544 350 aa13.84□□□□□ -0.19
USP4-203ENST00000415188 IFNA8P32881 189 aa13.84□□□□□ -0.19
USP4-203ENST00000415188 BCAP31P51572 246 aa13.84□□□□□ -0.19
USP4-203ENST00000415188 PPP5CP53041 499 aa13.84□□□□□ -0.19
USP4-203ENST00000415188 ATP1A4Q13733 1029 aa13.84□□□□□ -0.19
USP4-203ENST00000415188 LASP1Q14847 261 aaKnown RBP13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms